mRNA_E-siliculosus-1a_M_contig98.17736.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17736.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17736.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: D1J7C0_ECTSI (Acetolactate synthase small subunit n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7C0_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 6.390e-49
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPLIEREL+LIKLKVNLIERTEILNLAQIFRF+ITDVT+STLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE
Sbjct:   78 DITYLPLIERELVLIKLKVNLIERTEILNLAQIFRFKITDVTDSTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 170
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A1I9LVF0_9PHAE (Acetolactate synthase small subunit n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.000e-40
Identity = 75/93 (80.65%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPL+EREL+LIKL+V+LIER EI NLAQIFRF+ITD+T+ST+ILEVTAD GKIAAL+K+LEKYNIL+L R+GRIALIRES VSTSSLKE
Sbjct:   78 DITYLPLVERELVLIKLQVSLIERAEISNLAQIFRFKITDITDSTIILEVTADQGKIAALQKILEKYNILELSRSGRIALIRESGVSTSSLKE 170
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A8F0F7F2_9PHAE (Acetolactate synthase small subunit n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7F2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.780e-40
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPL++RELILIKL+V++ ER EILNLAQ+FRF+ITD+TESTLILE+TADPGKI AL+K+LEKYNILQL RTG IAL RES VSTSSLKE
Sbjct:   78 DITYLPLVQRELILIKLQVSVTEREEILNLAQVFRFKITDITESTLILELTADPGKIVALQKILEKYNILQLSRTGEIALTRESSVSTSSLKE 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A6B7EYZ6_9PHAE (Acetolactate synthase small subunit n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYZ6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 5.710e-40
Identity = 74/93 (79.57%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPLIEREL+L+KL+V+L+ERTEILNLAQIFRF+ITDVT+ST+ILE+TAD GK+AALEK+LEKY IL+L RTG IALIRESRVS+ SLKE
Sbjct:   78 DITYLPLIERELLLVKLQVSLLERTEILNLAQIFRFKITDVTDSTIILEITADQGKVAALEKLLEKYKILELCRTGGIALIRESRVSSLSLKE 170
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A516IDP2_9PHAE (Acetolactate synthase small subunit n=2 Tax=Lessonia TaxID=105411 RepID=A0A516IDP2_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.820e-39
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPL++REL+LIKL+VN+IER EIL LA IFRF+I D+TESTLI+EVTADPGKI AL+K+LEKYNILQL RTG IAL RES VSTSSLKE
Sbjct:   78 DITYLPLVQRELVLIKLQVNIIEREEILRLADIFRFKINDITESTLIIEVTADPGKIVALQKILEKYNILQLSRTGEIALTRESSVSTSSLKE 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A0S0G9Z6_COSCS (Acetolactate synthase small subunit n=19 Tax=Laminariales TaxID=2886 RepID=A0A0S0G9Z6_COSCS)

HSP 1 Score: 138 bits (347), Expect = 2.730e-39
Identity = 71/93 (76.34%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPL++RELILIKL+V++IER EI+NLA++FRF+ITD+TESTLILE+TADPGKI AL+K+L+KYNILQL RTG IAL RES V+TSSLKE
Sbjct:   78 DITYLPLVQRELILIKLQVSVIEREEIINLAEVFRFKITDITESTLILEITADPGKIVALQKILKKYNILQLSRTGEIALTRESSVNTSSLKE 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A0R6LUP2_UNDPI (Acetolactate synthase small subunit n=5 Tax=Alariaceae TaxID=2887 RepID=A0A0R6LUP2_UNDPI)

HSP 1 Score: 136 bits (343), Expect = 1.100e-38
Identity = 70/93 (75.27%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPL++REL+LIKL++++ ER EILNLA++FRF+ITD+TESTLILE+TADPGKI AL+K+LEKYNILQL RTG IA+ RES VSTSSLKE
Sbjct:   78 DITYLPLVQRELVLIKLQISVTEREEILNLAKVFRFKITDITESTLILELTADPGKIVALQKILEKYNILQLSRTGEIAVTRESSVSTSSLKE 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A8F0F9Y8_9PHAE (Acetolactate synthase small subunit n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Y8_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 5.950e-38
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPL+ERELILIKL+VN+ ER EILNLAQ+FRF+I D+TESTLILE+TADPGKIAAL KVL+KYNILQL R+G IAL RES V+T SL+E
Sbjct:   78 DITYLPLVERELILIKLQVNVTEREEILNLAQVFRFKINDITESTLILEITADPGKIAALHKVLKKYNILQLSRSGGIALTRESSVNTFSLRE 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A344PFD2_9PHAE (Acetolactate synthase small subunit n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFD2_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.540e-38
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +ITYLPL++REL+L+KL+VNL ER EI  LAQIFRF+ITD+T+ST+ILEVTAD GKIAALEK+LEKYNILQL RTG IALIRES VST SLKE
Sbjct:   78 DITYLPLVQRELVLVKLQVNLKERAEISTLAQIFRFKITDMTDSTIILEVTADQGKIAALEKILEKYNILQLSRTGGIALIRESGVSTLSLKE 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match: A0A8F0JXD3_9PHAE (Acetolactate synthase small subunit n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXD3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.970e-38
Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
            +IT LPL++REL+LIKL+VNLIERTEILNLAQ+FRF++ D+T+STLILE+TADPGKI AL +VL+KYNILQL RTG IAL RES V+TSSLKE
Sbjct:   78 DITCLPLVQRELLLIKLQVNLIERTEILNLAQVFRFKVIDMTDSTLILEITADPGKIVALYQVLDKYNILQLSRTGEIALTRESSVNTSSLKE 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7C0_ECTSI6.390e-4995.70Acetolactate synthase small subunit n=2 Tax=Ectoca... [more]
A0A1I9LVF0_9PHAE2.000e-4080.65Acetolactate synthase small subunit n=2 Tax=Pleuro... [more]
A0A8F0F7F2_9PHAE4.780e-4079.57Acetolactate synthase small subunit n=3 Tax=Lamina... [more]
A0A6B7EYZ6_9PHAE5.710e-4079.57Acetolactate synthase small subunit n=1 Tax=Clados... [more]
A0A516IDP2_9PHAE1.820e-3978.49Acetolactate synthase small subunit n=2 Tax=Lesson... [more]
A0A0S0G9Z6_COSCS2.730e-3976.34Acetolactate synthase small subunit n=19 Tax=Lamin... [more]
A0A0R6LUP2_UNDPI1.100e-3875.27Acetolactate synthase small subunit n=5 Tax=Alaria... [more]
A0A8F0F9Y8_9PHAE5.950e-3877.42Acetolactate synthase small subunit n=1 Tax=Chorda... [more]
A0A344PFD2_9PHAE7.540e-3878.49Acetolactate synthase small subunit n=4 Tax=Scytos... [more]
A0A8F0JXD3_9PHAE7.970e-3876.34Acetolactate synthase small subunit n=1 Tax=Pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:651865..652149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size285
Model size285
Exons1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006551,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043621,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234
KEGG ModuleM00019,M00570
KEGG Pathwayko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko03015,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230,map03015
KEGG ReactionR00006,R00014,R00226,R03050,R04672,R04673,R08648
KEGG koko:K01653,ko:K14376
KEGG rclassRC00027,RC00106,RC01192,RC02744,RC02893
Preferred nameilvH
Seed eggNOG ortholog2880.D1J7C0
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EC2.2.1.6,2.7.7.19
EggNOG OGsCOG0440@1,KOG2663@2759
EggNOG free text desc.acetolactate synthase activity
Seed ortholog evalue2.1e-37
Seed ortholog score161.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936568.9037452-CDS-E-siliculosus-1a_M_contig98:651864..6521491622936568.9037452-CDS-E-siliculosus-1a_M_contig98:651864..652149Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 651865..652149 +
1696251135.4855766-CDS-E-siliculosus-1a_M_contig98:651864..6521491696251135.4855766-CDS-E-siliculosus-1a_M_contig98:651864..652149Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 651865..652149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17736.1prot_E-siliculosus-1a_M_contig98.17736.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 651865..652149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17736.1

>prot_E-siliculosus-1a_M_contig98.17736.1 ID=prot_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=95bp
IVNITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLIL
EVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE
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mRNA from alignment at E-siliculosus-1a_M_contig98:651865..652149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17736.1 ID=mRNA_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=285bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:651865..652149+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATTGTCAATATAACTTATCTTCCTTTAATAGAACGGGAATTAATATTAAT
AAAACTTAAAGTCAATTTAATAGAACGAACTGAAATTTTAAACCTTGCTC
AAATATTTAGGTTTAGGATTACTGATGTGACAGAGTCTACACTTATTTTA
GAGGTTACTGCTGACCCAGGTAAAATTGCTGCTTTAGAAAAAGTATTAGA
AAAATATAATATTTTACAGTTAGTCCGAACTGGAAGAATAGCCCTTATAC
GTGAGTCTAGAGTTAGTACCTCATCTTTAAAAGAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:651865..652149+

>mRNA_E-siliculosus-1a_M_contig98.17736.1 ID=mRNA_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:651865..652149+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATTGTCAATATAACTTATCTTCCTTTAATAGAACGGGAATTAATATTAAT
AAAACTTAAAGTCAATTTAATAGAACGAACTGAAATTTTAAACCTTGCTC
AAATATTTAGGTTTAGGATTACTGATGTGACAGAGTCTACACTTATTTTA
GAGGTTACTGCTGACCCAGGTAAAATTGCTGCTTTAGAAAAAGTATTAGA
AAAATATAATATTTTACAGTTAGTCCGAACTGGAAGAATAGCCCTTATAC
GTGAGTCTAGAGTTAGTACCTCATCTTTAAAAGAAATTGTCAATATAACT
TATCTTCCTTTAATAGAACGGGAATTAATATTAATAAAACTTAAAGTCAA
TTTAATAGAACGAACTGAAATTTTAAACCTTGCTCAAATATTTAGGTTTA
GGATTACTGATGTGACAGAGTCTACACTTATTTTAGAGGTTACTGCTGAC
CCAGGTAAAATTGCTGCTTTAGAAAAAGTATTAGAAAAATATAATATTTT
ACAGTTAGTCCGAACTGGAAGAATAGCCCTTATACGTGAGTCTAGAGTTA
GTACCTCATCTTTAAAAGAA
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