Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
D1J7B8_ECTSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J7B8_ECTSI)
HSP 1 Score: 224 bits (572), Expect = 4.270e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN 386
ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN
Sbjct: 776 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN 903
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
A0A2I4Q2E7_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E7_9PHAE)
HSP 1 Score: 129 bits (325), Expect = 3.910e-32
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDE---------DPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEK 314
I+LSLTPRM+ELL+EEGFNP YGARPLRRALVKLVEDKVSLEYLRY+N++D+E + VDILVDV+ N+VKVSI+KT+ KE+ + ++ E++ YKI+VP +K
Sbjct: 773 ISLSLTPRMLELLIEEGFNPIYGARPLRRALVKLVEDKVSLEYLRYQNDHDEESTQKDQQENEAVDILVDVEFNRVKVSITKTLKKEQSEKPKDETPPQERKKYKIVVPSRQK 885
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
A0A8F0F755_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F755_9PHAE)
HSP 1 Score: 125 bits (315), Expect = 8.710e-31
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNEND----DEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVP 302
ITLSLTPRMMELL++EGFNP YGARPLRRALVKLVEDKVS+EYLRYKN++D +ED VDILVDVDLNKVKVSI KT K E XXXXX +KI++P
Sbjct: 771 ITLSLTPRMMELLIDEGFNPIYGARPLRRALVKLVEDKVSIEYLRYKNDHDGEDEEEDAVDILVDVDLNKVKVSIKKTEKKPEEXXXXXXXXXXXXXKFKIVLP 874
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
A0A8E6D4W2_9PHAE (Clp protease ATP binding subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4W2_9PHAE)
HSP 1 Score: 116 bits (290), Expect = 2.030e-27
Identity = 64/109 (58.72%), Postives = 86/109 (78.90%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDP---VDILVDVD-LNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKI 317
I+LSLT RMME+L+EEGFNPTYGARPLRRALVKLVEDKVSLEYLR+ + D+ED V+ILVDV+ L+KV+VSI + II+E+ Q+ E++ YK+++P+ ++
Sbjct: 772 ISLSLTTRMMEVLIEEGFNPTYGARPLRRALVKLVEDKVSLEYLRFTKDKDNEDQNPAVEILVDVNSLDKVEVSIKEQIIEEKKVEEQKPPVVKERKKYKVVLPKYRRL 880
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
A0A0R6M4R6_UNDPI (ATP-dependent clp protease ATP-binding subunit n=63 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4R6_UNDPI)
HSP 1 Score: 97.8 bits (242), Expect = 5.880e-21
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDD 158
I+LSLTPRMMELL+EEGFNPTYGARPLRRA+VKLVEDKVSLEYLRYK ++DD
Sbjct: 771 ISLSLTPRMMELLIEEGFNPTYGARPLRRAIVKLVEDKVSLEYLRYKKDHDD 822
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
A0A2T1CER0_9CYAN (ATP-dependent Clp protease ATP-binding subunit ClpC n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1CER0_9CYAN)
HSP 1 Score: 66.2 bits (160), Expect = 6.230e-10
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKT 224
ITL +TP+ ME LVEEG+NP+YGARPLRRA+++L+ED ++ E L + ++ D VDI D +V++ + +T
Sbjct: 745 ITLEVTPKFMERLVEEGYNPSYGARPLRRAIMRLLEDSLAEEILSGRVKHGDTALVDINED---GQVQIRVEQT 815
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
A0A7S2LSI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LSI6_9STRA)
HSP 1 Score: 63.5 bits (153), Expect = 6.470e-10
Identity = 26/44 (59.09%), Postives = 39/44 (88.64%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 134
ITL +TPR+ +++VEEGF+P YGARPLRRA+++L+ED ++ E+L
Sbjct: 86 ITLEITPRVKQIIVEEGFDPIYGARPLRRAVMRLLEDNLAKEFL 129
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
I4IGR8_9CHRO (ClpB_D2-small domain-containing protein n=1 Tax=Microcystis sp. T1-4 TaxID=1160279 RepID=I4IGR8_9CHRO)
HSP 1 Score: 60.5 bits (145), Expect = 2.140e-9
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDI 176
ITLS+T + E L+EEG+NP YGARPLRRA+++L+ED ++ E L + + D VDI
Sbjct: 10 ITLSVTDKFKERLIEEGYNPAYGARPLRRAIMRLLEDVLAEEILSGRVSDGDTAMVDI 67
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit ClpA homolog n=1 Tax=Cyanidium caldarium TaxID=2771 RepID=CLPC_CYACA)
HSP 1 Score: 64.7 bits (156), Expect = 2.150e-9
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNK 200
I+L +T R LL+EEG+NP+YGARPLRRALV+L+ED ++ E L K + D + ++DVD NK
Sbjct: 776 ISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKEGD----NAMIDVDENK 837
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match:
A0A7S6ZPD9_9STRA (ClpC n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPD9_9STRA)
HSP 1 Score: 63.9 bits (154), Expect = 4.010e-9
Identity = 27/44 (61.36%), Postives = 38/44 (86.36%), Query Frame = 3
Query: 3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 134
++L++T RM L++EGFNP YGARPLRRA+V+L+EDKV+ +YL
Sbjct: 775 LSLAVTTRMRARLIDEGFNPVYGARPLRRAVVRLIEDKVAAKYL 818
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 4.27e-66 / Id = 100.00 Expect = 3.91e-32 / Id = 61.06 Expect = 8.71e-31 / Id = 72.12 Expect = 2.03e-27 / Id = 58.72 Expect = 5.88e-21 / Id = 88.46 Expect = 6.23e-10 / Id = 47.30 Expect = 6.47e-10 / Id = 59.09 Expect = 2.14e-9 / Id = 51.72 Expect = 2.15e-9 / Id = 51.52 Expect = 4.01e-9 / Id = 61.36 Sequence D1J7B8_ECTSI A0A2I4Q2E7_9PHAE A0A8F0F755_9PHAE A0A8E6D4W2_9PHAE A0A0R6M4R6_UNDPI A0A2T1CER0_9CYAN A0A7S2LSI6_9STRA I4IGR8_9CHRO CLPC_CYACA A0A7S6ZPD9_9STRA Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 363 Model size 425 Exons 1 Hectar predicted targeting category other localisation BRITE ko00000,ko03110 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. O EggNOG OGs COG0542@1,KOG1051@2759 EggNOG free text desc. ATP binding GOs GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009706,GO:0009719,GO:0009725,GO:0009735,GO:0009889,GO:0009941,GO:0009987,GO:0010033,GO:0010380,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019222,GO:0019538,GO:0019866,GO:0022607,GO:0030312,GO:0031090,GO:0031323,GO:0031326,GO:0031897,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034214,GO:0034357,GO:0034613,GO:0042170,GO:0042221,GO:0042623,GO:0042651,GO:0042802,GO:0042803,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045037,GO:0045184,GO:0046907,GO:0046983,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051193,GO:0051234,GO:0051259,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0065002,GO:0065003,GO:0065007,GO:0070011,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072596,GO:0072598,GO:0090056,GO:0098796,GO:0140096,GO:1901401,GO:1901463,GO:1901564 KEGG Pathway ko01100,map01100 KEGG ko ko:K03696 Preferred name clpC Seed eggNOG ortholog 2880.D1J7B8 Seed ortholog evalue 1.3e-52 Seed ortholog score 212.2 Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936568.8323104-UTR-E-siliculosus-1a_M_contig98:650690..650716 1622936568.8323104-UTR-E-siliculosus-1a_M_contig98:650690..650716 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 650691..650716 + 1696251135.4523869-UTR-E-siliculosus-1a_M_contig98:650690..650716 1696251135.4523869-UTR-E-siliculosus-1a_M_contig98:650690..650716 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 650691..650716 + 1622936568.868459-UTR-E-siliculosus-1a_M_contig98:651079..651115 1622936568.868459-UTR-E-siliculosus-1a_M_contig98:651079..651115 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 651080..651115 + 1696251135.4759734-UTR-E-siliculosus-1a_M_contig98:651079..651115 1696251135.4759734-UTR-E-siliculosus-1a_M_contig98:651079..651115 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 651080..651115 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936568.8512764-CDS-E-siliculosus-1a_M_contig98:650716..651079 1622936568.8512764-CDS-E-siliculosus-1a_M_contig98:650716..651079 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 650717..651079 + 1696251135.4651282-CDS-E-siliculosus-1a_M_contig98:650716..651079 1696251135.4651282-CDS-E-siliculosus-1a_M_contig98:650716..651079 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 650717..651079 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17735.1
>prot_E-siliculosus-1a_M_contig98.17735.1 ID=prot_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=121bp
MMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDI back to top mRNA from alignment at E-siliculosus-1a_M_contig98:650691..651115+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17735.1 ID=mRNA_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=425bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:650691..651115+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)ATATAACACTTTCTCTAACTCCACGT ATGATGGAATTATTAGTTGAAGAA
GGTTTTAATCCTACCTATGGTGCCCGACCTCTACGTCGAGCTCTCGTAAA
ATTAGTGGAAGATAAAGTTTCTCTTGAATATTTACGATATAAAAATGAAA
ATGATGATGAAGACCCAGTAGATATCTTAGTCGATGTAGATCTTAATAAG
GTTAAAGTTTCAATCTCAAAAACTATTATAAAAGAAGAAGTAAAACCTGC
TCAGGAAATAAAACCAGCACAAGAGAAAAGGTCATATAAAATTATAGTTC
CTCGTTTAGAAAAAATAAGAAAGGAAGAAGAAGCTAAAGCGAAATTAGAT
TTAGACAAATTATTACAGCAAAAGCAAGAAAGTAATTAG CTTTAGATAGA
ACAAGCATAGTTTAATTAACTAAAT back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:650691..651115+
>mRNA_E-siliculosus-1a_M_contig98.17735.1 ID=mRNA_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:650691..651115+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top