mRNA_E-siliculosus-1a_M_contig98.17735.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17735.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17735.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: D1J7B8_ECTSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J7B8_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 4.270e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN 386
            ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN
Sbjct:  776 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKIRKEEEAKAKLDLDKLLQQKQESN 903          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A2I4Q2E7_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.910e-32
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDE---------DPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEK 314
            I+LSLTPRM+ELL+EEGFNP YGARPLRRALVKLVEDKVSLEYLRY+N++D+E         + VDILVDV+ N+VKVSI+KT+ KE+ +  ++     E++ YKI+VP  +K
Sbjct:  773 ISLSLTPRMLELLIEEGFNPIYGARPLRRALVKLVEDKVSLEYLRYQNDHDEESTQKDQQENEAVDILVDVEFNRVKVSITKTLKKEQSEKPKDETPPQERKKYKIVVPSRQK 885          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A8F0F755_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F755_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 8.710e-31
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNEND----DEDPVDILVDVDLNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVP 302
            ITLSLTPRMMELL++EGFNP YGARPLRRALVKLVEDKVS+EYLRYKN++D    +ED VDILVDVDLNKVKVSI KT  K E      XXXXX    +KI++P
Sbjct:  771 ITLSLTPRMMELLIDEGFNPIYGARPLRRALVKLVEDKVSIEYLRYKNDHDGEDEEEDAVDILVDVDLNKVKVSIKKTEKKPEEXXXXXXXXXXXXXKFKIVLP 874          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A8E6D4W2_9PHAE (Clp protease ATP binding subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4W2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.030e-27
Identity = 64/109 (58.72%), Postives = 86/109 (78.90%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDP---VDILVDVD-LNKVKVSISKTIIKEEVKPAQEXXXXXEKRSYKIIVPRLEKI 317
            I+LSLT RMME+L+EEGFNPTYGARPLRRALVKLVEDKVSLEYLR+  + D+ED    V+ILVDV+ L+KV+VSI + II+E+    Q+     E++ YK+++P+  ++
Sbjct:  772 ISLSLTTRMMEVLIEEGFNPTYGARPLRRALVKLVEDKVSLEYLRFTKDKDNEDQNPAVEILVDVNSLDKVEVSIKEQIIEEKKVEEQKPPVVKERKKYKVVLPKYRRL 880          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A0R6M4R6_UNDPI (ATP-dependent clp protease ATP-binding subunit n=63 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4R6_UNDPI)

HSP 1 Score: 97.8 bits (242), Expect = 5.880e-21
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDD 158
            I+LSLTPRMMELL+EEGFNPTYGARPLRRA+VKLVEDKVSLEYLRYK ++DD
Sbjct:  771 ISLSLTPRMMELLIEEGFNPTYGARPLRRAIVKLVEDKVSLEYLRYKKDHDD 822          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A2T1CER0_9CYAN (ATP-dependent Clp protease ATP-binding subunit ClpC n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1CER0_9CYAN)

HSP 1 Score: 66.2 bits (160), Expect = 6.230e-10
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNKVKVSISKT 224
            ITL +TP+ ME LVEEG+NP+YGARPLRRA+++L+ED ++ E L  + ++ D   VDI  D    +V++ + +T
Sbjct:  745 ITLEVTPKFMERLVEEGYNPSYGARPLRRAIMRLLEDSLAEEILSGRVKHGDTALVDINED---GQVQIRVEQT 815          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A7S2LSI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LSI6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.470e-10
Identity = 26/44 (59.09%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 134
            ITL +TPR+ +++VEEGF+P YGARPLRRA+++L+ED ++ E+L
Sbjct:   86 ITLEITPRVKQIIVEEGFDPIYGARPLRRAVMRLLEDNLAKEFL 129          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: I4IGR8_9CHRO (ClpB_D2-small domain-containing protein n=1 Tax=Microcystis sp. T1-4 TaxID=1160279 RepID=I4IGR8_9CHRO)

HSP 1 Score: 60.5 bits (145), Expect = 2.140e-9
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDI 176
            ITLS+T +  E L+EEG+NP YGARPLRRA+++L+ED ++ E L  +  + D   VDI
Sbjct:   10 ITLSVTDKFKERLIEEGYNPAYGARPLRRAIMRLLEDVLAEEILSGRVSDGDTAMVDI 67          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit ClpA homolog n=1 Tax=Cyanidium caldarium TaxID=2771 RepID=CLPC_CYACA)

HSP 1 Score: 64.7 bits (156), Expect = 2.150e-9
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDILVDVDLNK 200
            I+L +T R   LL+EEG+NP+YGARPLRRALV+L+ED ++ E L  K +  D    + ++DVD NK
Sbjct:  776 ISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKEGD----NAMIDVDENK 837          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Match: A0A7S6ZPD9_9STRA (ClpC n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPD9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.010e-9
Identity = 27/44 (61.36%), Postives = 38/44 (86.36%), Query Frame = 3
Query:    3 ITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 134
            ++L++T RM   L++EGFNP YGARPLRRA+V+L+EDKV+ +YL
Sbjct:  775 LSLAVTTRMRARLIDEGFNPVYGARPLRRAVVRLIEDKVAAKYL 818          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7B8_ECTSI4.270e-66100.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
A0A2I4Q2E7_9PHAE3.910e-3261.06ATP-dependent clp protease ATP-binding subunit n=1... [more]
A0A8F0F755_9PHAE8.710e-3172.12ATP-dependent clp protease ATP-binding subunit n=1... [more]
A0A8E6D4W2_9PHAE2.030e-2758.72Clp protease ATP binding subunit n=1 Tax=Ishige ok... [more]
A0A0R6M4R6_UNDPI5.880e-2188.46ATP-dependent clp protease ATP-binding subunit n=6... [more]
A0A2T1CER0_9CYAN6.230e-1047.30ATP-dependent Clp protease ATP-binding subunit Clp... [more]
A0A7S2LSI6_9STRA6.470e-1059.09Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
I4IGR8_9CHRO2.140e-951.72ClpB_D2-small domain-containing protein n=1 Tax=Mi... [more]
CLPC_CYACA2.150e-951.52ATP-dependent Clp protease ATP-binding subunit Clp... [more]
A0A7S6ZPD9_9STRA4.010e-961.36ClpC n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:650691..651115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size363
Model size425
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03110
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0542@1,KOG1051@2759
EggNOG free text desc.ATP binding
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009706,GO:0009719,GO:0009725,GO:0009735,GO:0009889,GO:0009941,GO:0009987,GO:0010033,GO:0010380,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019222,GO:0019538,GO:0019866,GO:0022607,GO:0030312,GO:0031090,GO:0031323,GO:0031326,GO:0031897,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034214,GO:0034357,GO:0034613,GO:0042170,GO:0042221,GO:0042623,GO:0042651,GO:0042802,GO:0042803,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045037,GO:0045184,GO:0046907,GO:0046983,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051193,GO:0051234,GO:0051259,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0065002,GO:0065003,GO:0065007,GO:0070011,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072596,GO:0072598,GO:0090056,GO:0098796,GO:0140096,GO:1901401,GO:1901463,GO:1901564
KEGG Pathwayko01100,map01100
KEGG koko:K03696
Preferred nameclpC
Seed eggNOG ortholog2880.D1J7B8
Seed ortholog evalue1.3e-52
Seed ortholog score212.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17735.1prot_E-siliculosus-1a_M_contig98.17735.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 650717..651079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936568.8323104-UTR-E-siliculosus-1a_M_contig98:650690..6507161622936568.8323104-UTR-E-siliculosus-1a_M_contig98:650690..650716Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 650691..650716 +
1696251135.4523869-UTR-E-siliculosus-1a_M_contig98:650690..6507161696251135.4523869-UTR-E-siliculosus-1a_M_contig98:650690..650716Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 650691..650716 +
1622936568.868459-UTR-E-siliculosus-1a_M_contig98:651079..6511151622936568.868459-UTR-E-siliculosus-1a_M_contig98:651079..651115Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 651080..651115 +
1696251135.4759734-UTR-E-siliculosus-1a_M_contig98:651079..6511151696251135.4759734-UTR-E-siliculosus-1a_M_contig98:651079..651115Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 651080..651115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936568.8512764-CDS-E-siliculosus-1a_M_contig98:650716..6510791622936568.8512764-CDS-E-siliculosus-1a_M_contig98:650716..651079Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 650717..651079 +
1696251135.4651282-CDS-E-siliculosus-1a_M_contig98:650716..6510791696251135.4651282-CDS-E-siliculosus-1a_M_contig98:650716..651079Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 650717..651079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17735.1

>prot_E-siliculosus-1a_M_contig98.17735.1 ID=prot_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=121bp
MMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDI
LVDVDLNKVKVSISKTIIKEEVKPAQEIKPAQEKRSYKIIVPRLEKIRKE
EEAKAKLDLDKLLQQKQESN*
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mRNA from alignment at E-siliculosus-1a_M_contig98:650691..651115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17735.1 ID=mRNA_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=425bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:650691..651115+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATATAACACTTTCTCTAACTCCACGTATGATGGAATTATTAGTTGAAGAA GGTTTTAATCCTACCTATGGTGCCCGACCTCTACGTCGAGCTCTCGTAAA ATTAGTGGAAGATAAAGTTTCTCTTGAATATTTACGATATAAAAATGAAA ATGATGATGAAGACCCAGTAGATATCTTAGTCGATGTAGATCTTAATAAG GTTAAAGTTTCAATCTCAAAAACTATTATAAAAGAAGAAGTAAAACCTGC TCAGGAAATAAAACCAGCACAAGAGAAAAGGTCATATAAAATTATAGTTC CTCGTTTAGAAAAAATAAGAAAGGAAGAAGAAGCTAAAGCGAAATTAGAT TTAGACAAATTATTACAGCAAAAGCAAGAAAGTAATTAGCTTTAGATAGA ACAAGCATAGTTTAATTAACTAAAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:650691..651115+

>mRNA_E-siliculosus-1a_M_contig98.17735.1 ID=mRNA_E-siliculosus-1a_M_contig98.17735.1|Name=mRNA_E-siliculosus-1a_M_contig98.17735.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:650691..651115+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGGAATTATTAGTTGAAGAAGGTTTTAATCCTACCTATGGTGCCCG
ACCTCTACGTCGAGCTCTCGTAAAATTAGTGGAAGATAAAGTTTCTCTTG
AATATTTACGATATAAAAATGAAAATGATGATGAAGACCCAGTAGATATC
TTAGTCGATGTAGATCTTAATAAGGTTAAAGTTTCAATCTCAAAAACTAT
TATAAAAGAAGAAGTAAAACCTGCTCAGGAAATAAAACCAGCACAAGAGA
AAAGGTCATATAAAATTATAGTTCCTCGTTTAGAAAAAATAAGAAAGGAA
GAAGAAGCTAAAGCGAAATTAGATTTAGACAAATTATTACAGCAAAAGCA
AGAAAGTAATTAGATGATGGAATTATTAGTTGAAGAAGGTTTTAATCCTA
CCTATGGTGCCCGACCTCTACGTCGAGCTCTCGTAAAATTAGTGGAAGAT
AAAGTTTCTCTTGAATATTTACGATATAAAAATGAAAATGATGATGAAGA
CCCAGTAGATATCTTAGTCGATGTAGATCTTAATAAGGTTAAAGTTTCAA
TCTCAAAAACTATTATAAAAGAAGAAGTAAAACCTGCTCAGGAAATAAAA
CCAGCACAAGAGAAAAGGTCATATAAAATTATAGTTCCTCGTTTAGAAAA
AATAAGAAAGGAAGAAGAAGCTAAAGCGAAATTAGATTTAGACAAATTAT
TACAGCAAAAGCAAGAAAGTAATTAG
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