mRNA_E-siliculosus-1a_M_contig98.17732.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17732.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17732.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.440e-26
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:    3 GGQRRAFRLRGSPDEGGSCT-VIRDLR*RASRCRGGSVGICRCSRRAFQGGEQQQGFF 173
            GGQRR FRL GSPDEGGSCT VI DLR RASRCRGGSVGICRCSRRA+QGGEQ QGFF
Sbjct:    3 GGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFF 60
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.180e-22
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 3 
Query:    3 GGQRRAFRLRGSPDEGGSCTVIRDLR*RASRCRGGSVGICRCSRRAFQGGEQQQGFFAGGW 185
            GG  + F L GS DEGGSC+VI DLR RASRCRGGSV ICRCSRRA+QGGEQQQG    GW
Sbjct:    5 GGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQGSLLVGW 65
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.610e-14
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   43 MKGGAAQ-SSEISANALPDVGGAAWAFVVVVGALSRVASSSRGFLPVG 183
            MKGGAAQ SS+ISANALPDVGGAAWAFVVVVGAL+RV SSSR FL  G
Sbjct:    1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGG 48
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR06_ECTSI1.440e-2687.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB56_9PHAE6.180e-2273.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGJ8_ECTSI2.610e-1485.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:636689..636915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size225
Model size227
Exons1
Ec32 orthologEc-01_009300.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936568.628035-CDS-E-siliculosus-1a_M_contig98:636690..6369151622936568.628035-CDS-E-siliculosus-1a_M_contig98:636690..636915Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 636691..636915 -
1696251135.3710318-CDS-E-siliculosus-1a_M_contig98:636690..6369151696251135.3710318-CDS-E-siliculosus-1a_M_contig98:636690..636915Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 636691..636915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17732.1prot_E-siliculosus-1a_M_contig98.17732.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 636691..636915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17732.1

>prot_E-siliculosus-1a_M_contig98.17732.1 ID=prot_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=75bp
RGASAGLFGCAVLQMKGGAAQSSEISANALPDVGGAAWAFVVVVGALSRV
ASSSRGFLPVGGRSRSPLGNGEKTP
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mRNA from alignment at E-siliculosus-1a_M_contig98:636689..636915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17732.1 ID=mRNA_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=227bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:636689..636915- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGGGGCCAGCGCAGGGCTTTTCGGTTGCGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCAGAGATCTCCGCTAACGCGCTTCCAGATGTAG
GGGGGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTTCCAGGGTG
GCGAGCAGCAGCAGGGGTTTTTTGCCGGTGGGTGGGAGGAGCCGGAGTCC
GCTTGGCAATGGAGAGAAGACCCCCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:636689..636915-

>mRNA_E-siliculosus-1a_M_contig98.17732.1 ID=mRNA_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:636689..636915- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGGGGCCAGCGCAGGGCTTTTCGGTTGCGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCAGAGATCTCCGCTAACGCGCTTCCAGATGTAG
GGGGGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTTCCAGGGTG
GCGAGCAGCAGCAGGGGTTTTTTGCCGGTGGGTGGGAGGAGCCGGAGTCC
GCTTGGCAATGGAGAGAAGACCCCCAGGGGGGCCAGCGCAGGGCTTTTCG
GTTGCGCGGTTCTCCAGATGAAGGGGGGAGCTGCACAGTCATCAGAGATC
TCCGCTAACGCGCTTCCAGATGTAGGGGGGGCAGCGTGGGCATTTGTCGT
TGTAGTCGGCGCGCTTTCCAGGGTGGCGAGCAGCAGCAGGGGTTTTTTGC
CGGTGGGTGGGAGGAGCCGGAGTCCGCTTGGCAATGGAGAGAAGACCCCC
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