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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.440e-26 Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 3 Query: 3 GGQRRAFRLRGSPDEGGSCT-VIRDLR*RASRCRGGSVGICRCSRRAFQGGEQQQGFF 173
GGQRR FRL GSPDEGGSCT VI DLR RASRCRGGSVGICRCSRRA+QGGEQ QGFF
Sbjct: 3 GGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFF 60
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 6.180e-22 Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 3 Query: 3 GGQRRAFRLRGSPDEGGSCTVIRDLR*RASRCRGGSVGICRCSRRAFQGGEQQQGFFAGGW 185
GG + F L GS DEGGSC+VI DLR RASRCRGGSV ICRCSRRA+QGGEQQQG GW
Sbjct: 5 GGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQGSLLVGW 65
BLAST of mRNA_E-siliculosus-1a_M_contig98.17732.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.610e-14 Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1 Query: 43 MKGGAAQ-SSEISANALPDVGGAAWAFVVVVGALSRVASSSRGFLPVG 183
MKGGAAQ SS+ISANALPDVGGAAWAFVVVVGAL+RV SSSR FL G
Sbjct: 1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGG 48
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 225 |
| Model size | 227 |
| Exons | 1 |
| Ec32 ortholog | Ec-01_009300.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936568.628035-CDS-E-siliculosus-1a_M_contig98:636690..636915 | 1622936568.628035-CDS-E-siliculosus-1a_M_contig98:636690..636915 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 636691..636915 - |
| 1696251135.3710318-CDS-E-siliculosus-1a_M_contig98:636690..636915 | 1696251135.3710318-CDS-E-siliculosus-1a_M_contig98:636690..636915 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 636691..636915 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17732.1 >prot_E-siliculosus-1a_M_contig98.17732.1 ID=prot_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=75bp
RGASAGLFGCAVLQMKGGAAQSSEISANALPDVGGAAWAFVVVVGALSRV
ASSSRGFLPVGGRSRSPLGNGEKTP back to topmRNA from alignment at E-siliculosus-1a_M_contig98:636689..636915- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig98.17732.1 ID=mRNA_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=227bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:636689..636915- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGGGGCCAGCGCAGGGCTTTTCGGTTGCGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCAGAGATCTCCGCTAACGCGCTTCCAGATGTAG
GGGGGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTTCCAGGGTG
GCGAGCAGCAGCAGGGGTTTTTTGCCGGTGGGTGGGAGGAGCCGGAGTCC
GCTTGGCAATGGAGAGAAGACCCCCGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:636689..636915- >mRNA_E-siliculosus-1a_M_contig98.17732.1 ID=mRNA_E-siliculosus-1a_M_contig98.17732.1|Name=mRNA_E-siliculosus-1a_M_contig98.17732.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:636689..636915- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGGGGCCAGCGCAGGGCTTTTCGGTTGCGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCAGAGATCTCCGCTAACGCGCTTCCAGATGTAG
GGGGGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTTCCAGGGTG
GCGAGCAGCAGCAGGGGTTTTTTGCCGGTGGGTGGGAGGAGCCGGAGTCC
GCTTGGCAATGGAGAGAAGACCCCCAGGGGGGCCAGCGCAGGGCTTTTCG
GTTGCGCGGTTCTCCAGATGAAGGGGGGAGCTGCACAGTCATCAGAGATC
TCCGCTAACGCGCTTCCAGATGTAGGGGGGGCAGCGTGGGCATTTGTCGT
TGTAGTCGGCGCGCTTTCCAGGGTGGCGAGCAGCAGCAGGGGTTTTTTGC
CGGTGGGTGGGAGGAGCCGGAGTCCGCTTGGCAATGGAGAGAAGACCCCC back to top
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