Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17721.1 vs. uniprot
Match: D7G2S7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S7_ECTSI) HSP 1 Score: 242 bits (618), Expect = 2.580e-79 Identity = 117/139 (84.17%), Postives = 128/139 (92.09%), Query Frame = 2 Query: 68 ASKAVLESASAESRVFIDSCGGSGIDGEEHRISLGGCRLDILLDDQLHRVAVAASVLLGGGNRPLFVTSSRPHSTRSVHSRKEQEMVLIARCLYPGGGGVVGREEDGRRHVAVNRQ*LHAIALVGRLKNLWPPYVDPDF 484
A++A LESAS ESRVFIDSCGGSGI GEEHRI LGGCRLD LL+DQL +VAVAASVLLG GNRPL+ SS PH+TRSVHSRK+Q+++LIARCLYPGGGGVVGREEDGRRHVAVNRQ LHAIALVGRLKNLWPPYVDP+F
Sbjct: 2 AAEAALESASTESRVFIDSCGGSGIAGEEHRIPLGGCRLDNLLEDQLAKVAVAASVLLGNGNRPLYAASSHPHTTRSVHSRKDQQILLIARCLYPGGGGVVGREEDGRRHVAVNRQELHAIALVGRLKNLWPPYVDPEF 140
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 381 |
| Model size | 625 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936564.8393636-UTR-E-siliculosus-1a_M_contig98:425550..425587 | 1622936564.8393636-UTR-E-siliculosus-1a_M_contig98:425550..425587 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 425551..425587 + |
| 1696251133.2086205-UTR-E-siliculosus-1a_M_contig98:425550..425587 | 1696251133.2086205-UTR-E-siliculosus-1a_M_contig98:425550..425587 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 425551..425587 + |
| 1622936564.8759375-UTR-E-siliculosus-1a_M_contig98:425968..426035 | 1622936564.8759375-UTR-E-siliculosus-1a_M_contig98:425968..426035 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 425969..426035 + |
| 1696251133.240003-UTR-E-siliculosus-1a_M_contig98:425968..426035 | 1696251133.240003-UTR-E-siliculosus-1a_M_contig98:425968..426035 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 425969..426035 + |
| 1622936564.888851-UTR-E-siliculosus-1a_M_contig98:431606..431746 | 1622936564.888851-UTR-E-siliculosus-1a_M_contig98:431606..431746 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 431607..431746 + |
| 1696251133.254571-UTR-E-siliculosus-1a_M_contig98:431606..431746 | 1696251133.254571-UTR-E-siliculosus-1a_M_contig98:431606..431746 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 431607..431746 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936564.860211-CDS-E-siliculosus-1a_M_contig98:425587..425968 | 1622936564.860211-CDS-E-siliculosus-1a_M_contig98:425587..425968 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 425588..425968 + |
| 1696251133.2236094-CDS-E-siliculosus-1a_M_contig98:425587..425968 | 1696251133.2236094-CDS-E-siliculosus-1a_M_contig98:425587..425968 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 425588..425968 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17721.1 >prot_E-siliculosus-1a_M_contig98.17721.1 ID=prot_E-siliculosus-1a_M_contig98.17721.1|Name=mRNA_E-siliculosus-1a_M_contig98.17721.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=127bp
MHPLLQPYVNASKAVLESASAESRVFIDSCGGSGIDGEEHRISLGGCRLD
ILLDDQLHRVAVAASVLLGGGNRPLFVTSSRPHSTRSVHSRKEQEMVLIA
RCLYPGGGGVVGREEDGRRHVAVNRQ* back to topmRNA from alignment at E-siliculosus-1a_M_contig98:425551..431746+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig98.17721.1 ID=mRNA_E-siliculosus-1a_M_contig98.17721.1|Name=mRNA_E-siliculosus-1a_M_contig98.17721.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6196bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:425551..431746+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CATCAAATCCCACATCGAACCATTCCATACGTCCAACATGCATCCCCTAC
TTCAGCCTTACGTCAATGCGTCCAAGGCTGTATTGGAGAGTGCGTCTGCC
GAAAGTCGCGTGTTTATCGACTCTTGCGGGGGGTCAGGCATCGACGGAGA
AGAGCACCGCATCTCTCTGGGAGGATGCCGACTCGACATTCTCTTGGACG
ACCAGCTTCATAGAGTCGCCGTAGCTGCTTCCGTCCTGTTGGGGGGTGGG
AACAGGCCCCTGTTTGTCACGTCGTCACGCCCGCACTCCACGCGGAGTGT
GCACAGTCGCAAGGAACAGGAGATGGTGCTCATCGCCCGCTGCTTGTATC
CGGGTGGCGGTGGTGTTGTCGGGCGGGAAGAAGACGGGAGGAGACATGTG
GCAGTCAACCGTCAGTAACTCCACGCCATCGCCCTGGTAGGGCGTTTGAA
GAACCTGTGGCCCCCGTATGTCGATCCCGATTTCGGTGAGTGGGTGACCT
AGCGCGACGAGTGTTGGTTGTAAAGAACATCCTGCCATATCAGCGCGTCG
CTGTGGTCGTTAGCCTCAACACACGAGCGAGTGAGGGTTGCTCTGCGCTA
CAGCAGTGGCGGGTACGGATTAAGAGAGACTAGTCTATCGATGATAAAGT
TCCGAGCGAAGGGCGTCAAACTGCCTCGGATTGATCATGATAAATACATA
CATTTCACAGCAGTACGGTTTACAAGCAAGAGAAATTCGGGGTGTAGAGT
GGATTACTGGCTTTTCCCAACCCTCTCTTAAACCGTAGCCGCCGGTACAC
GATGCACTGTATGTGTTCGTAACCCTAAGTGATATGCCCACGTAAGTCTT
TGCAGCAATATGCCGTTTGATGTTTAGATGCTTGATGTCGTTCACACCGG
GTTGGGGGAAGAGCAGGAAGTGCCACGCCACGCAGCAGCAGAGCAGCTGC
CGTGGGGGCTCCGCACAATCACCCTTTTGTACGTACTACCCAATAGACAC
CTATCTGCGGAACACCTGAAACAGTCACCTCGACTACACATATCCGACAG
CAACGCAATACACGAACACTCCCTGGTTCTTTACGCGAAAGTAACTAACC
ATTCGTTGGATCTCGAGTATGCGTCACCTTCAGACAAGTATTCCGCAAAC
GCAACAAATCAATAATAATCCAAGGGGCAACCCGGCCACCGGGTCAAAAC
CCCTCCCAAACGTCCCATACCAAATAGGACAACGGCACTCTGAAAAGACA
CGATGAAAAAACCAAACAGGATAACACCGGCATCGCCATCAATCCGTGCT
ATCCTCCCAACACGTTTCCGTATCATCTGCCAAGTACCCACCAAAGCCCA
AAAGAGTAGGCCACAACCGCTGCTGTCTTATTACCCAATGAAGCCTAACA
CGAGTGTTCTGCAAATTTTCTCCTCCTACCGCCCTCCCCGCTCGACGAAC
AACTATCGATGATCTGAGCACCTAACTCCCTCCCTCAACCTTGATTCCGG
CGCATCGCGGCGCCCCCAGGATTGGAGGTGCATGGTGCAATCACCCTGAG
ACAACTGTTTTGCCAAACGCATCGGACGTGAAAAGCATGCTTGCAACCAA
CTCTTTGACTCTCATCAAGGCAAACTTAGCCTACTTGCACAAAACTCTTC
CGACTCTCCGAAAAACAAATATTCTCAATCATCACATACCACGCGTCGAT
AGGGTTCTCCCTCACGCTCAAGAAACTGGGGTCATCACGTCATGCAATAA
CCCCCCTCGCTCTGCACTCGCTGCGAGGGGCACGCCGCATAATCTACCTC
TCATTCTACGCTCGCGGAGAACACACCTGACGATCTACATAGCACATGCA
TCGAGAACTTATCATGCTGAGGCTTCTCCCCTCTTTCAAGACAAACACAT
TGATTCCTATCATGGGGCTTCTCCCCTTCTACAAGACAAACACTGTCATA
GATTTGGAGACGCGTTGCTACTGCGAATCCCTCAGTAAGGTGGATACGTC
TGGTACATGGGTCCACACCTACCTGCAGTAACAACGGAAATGTCACCTAC
AGCAGTATAACAGTGTCCTCCCCTCCCCATTTCCACCTCACGCACACAAG
GTGATACATCTGGTGCATGGGTCCACACCTATCTGCAGCAACAACAGAAA
TGTCACCTACAGCAGTATTACAGTGTCCTCCCCTCCCCATTTCTACCTCA
TGTTGACGCCAGCACAATTTTACCTGCGCCGGTGTCTGCAACTTTTGATA
CACCGGGTCCTGTGTACCCCCTTTTTTTCAGCCGACACGCTGGATACTGT
TTCACCCCTGTGCGTGAGTTTTCCTCGGCCGCAGGGAGCGCCTGTGCTGC
ATCCCCTCATTTGATACACCGGGTCCTGTGTACCCCTTCTCTTCTGCCGA
CACGCTAGATACTGTTTTACCTCTGCGTAAGTTTTCATCGGCTGCCGGGA
GCGCATGTGCTGCATCCCTTCATCTGATACACCTGGTCCTGTGTACCCCT
TCTGTTCAACCGACACGCTAGATACTGGTTTACCTCTGTGAGTGAATTTT
CATCGGGTGTGGGGAGCGCCTATGCTGCATCCCCTCCTTTGATACGCCTG
GTCCCGCGTACCCCTTTTCTTTCTGCCCCAGACAAAGTTTTCATCGCCCG
CGGACATCATGAAATGGAAGCGCCTGTACCGCGAATCCCCATCATAGAGT
GGCTGGTTTTTGGAGCCGAATTACCATCGTCGTACGAAACACCCGCGATA
ACACGCCTGGTTTTTACCATCGAAAAGACCAACAACAATTGCTCAACAAA
ACACCCACACTCAAGAATGGAAACGCCTGAACCGCGAATCCCCTTTCGAA
AATCATCGTTGGTCGTATCATCGTAAGCGAAGCTACCATCACTCTACGAA
CACCAAATCAGAAAATGGAAACGCCTTAACCGCGAATCCCCTGTAGAAAC
TATCGGTATCATTCGTCACAAGCAAAATCATTCAATATCACTCACGAACT
CAACCAGAAAGAAGCGCCCCACGGCAACGCCGCGTTGTTGTTGTCCCTCG
TTCAAAAGCACAGCAGATTTCGCGGTCTCGCCCTTGCTCCTCTGCGGCAG
TTCCACGTTCACCAGAATCGCCATGCAATCCTCCGGTTCTCCTGGAGCGA
GTACTCTTCCCGCGATCAACAGGCTCGTGTGTTGTGCCGCCCGCTACTTC
ACCGCCGACGCCGCCGCCCCTTTGCTGCCTTGTCATTGGGCCTGTCCCAA
CAGGTCGCTCATGTTTGTGGCCCCGAAGGATTAACCTCCAGGTTCCACCT
CCTGACACCTTGTCCCGTGTGCCCGGGGCAGTCAAGCTACCCCCAGCAGC
GCCTGTGCTAGAGCTGCCAACCGTACAGAAAAAGTCGATGGTCTGGAACC
CAACAAACCCACCATTTGCAGGGACGTCAAACGCCCGCACCGGTTCACCT
TCCGTGCCCGATCTACTGCTGCTCTCTCTTCCAGCGGCGTCATCTGTTCT
AACGCCAGCCGCAGCGTACAGCTCTGATAGGCAGCTGCCTGGCGGCGAGA
TTCCGACAATCCCACCGCAGGATGCGGCGCGTCTTCCAGCACCGCCTGAC
CCCCCTCCGCTTCCGCAATCTGGCATTGCCTGCAGCAGCGATGACATCTT
GTCCATCACGCCCTGCATCCAAACTCGCTGCACATTGCTTCCCAGCGGGG
GGGCAGCGGATGGGTGGCCCGGGGGACCTACTCCCCCGACTCCACCGGGT
GGCACCCCAAACCGTGTGCCCGGCGCGGCTCCTCCGCGCCCTGAGGCGTT
GCCAGCGCCGCTTGACTCCCCCTCTTCTGCCCCCGCCGCCCTGGCAGAAG
GCATCTGAAGTTGCCCTAGCTTCTCCAAGACAGCTGACAGCACCTTGCTT
TGCTCCTCCAGCCTCGTGGACAGCTCCGCCACGCGCGTGTCGATCGTGGT
TCCGCCGCTGTCGCTCGCTGGGGCATCGCCTAACTTGGTTTTTGCAAAGG
GGCTCCTTCGAAGGAAAACTCTAGAGTGTTCCGTAACCCTAAGTGATATG
CCCATGTAAGTCTTTGCAGCAATATGCCGTTTGATGTTTAGATGCTTGAT
GTCGTTCACACCGGGTAGGGGGTAAGAGCAGGAAGTGCCACGCCACGCAG
CAGCAGAGCAGCTGCCGTGGGGGCTCCGCACAATCACCCTTTTGTACGTA
CTACCCAATAGACACCTATCTGCAGAACACCTGAAACAGTCACCTCGACT
ACACATATCCGACAACGACGCAATACACGAACAGTATGTACATCGTGCTA
CGTTTTCGCCCCGTGTTGGAAGTCCACAATACAAGGGCGTGAGGCGTCAA
TATTTTTTTTGTTTTGTAGAGAAAACGAAAAGTACCTGCAGTAGACTTGT
GCATTGTTAGATACATTGTTAACTGACGAGGGCGCTACTTTGTGCATTGT
ACCGTGACCTGGCGAGGACGCTAGTATGGGACACACTCCACGTTGATGGG
CGTGGCGACTTTTCTGTTCAGAGGCGCATAGTGCAAACAACGCTCAACGT
CCAAATATGCAACCTCAAACAAAGAGTTTGCCTGACGCTGTCTGCCACCA
AGTTCCGTTTTTCGCAGCAAAAAAGAAGAAGCGTTGACCGACCGAGCGAG
ACCCAACCACACGCGCATCTCTCCTCTCTTTTCCTCCGCCCATAGATAGC
TAACAGCAGCAGTGTAGTATAGTTCACACCCTGCTCCTCCTGCCGTCTCG
CCCTCGCTGTGGTGTGTGTCTCACTCCCCCTTTTCCATATGGCTCCGTGG
TGTCTTGTGTTAGGGTTACTGCCTACGTCCCCAGCCCGCTTGCTGCAGCA
AAACAACTGAGAGACCAACAACAACAACCAAACGTGTATGCATCTCTCCT
CTCGCTCCTCCTCTGCCGATAGCTAACAGAAGTAGTATAGGGCACACACT
GATCCCGCCTCGCTCTCGCCCAAACTCTCCCTGTGGTGTGCGTCTTCCTC
CTCTCCGGTCCTTGACGATGTATGTCTGGTCCGCCGATAGAAGCTGTCTT
TCGCGCGAATAATCCTATGCCTACGTACGTCTGGTCCCAATCAAGCCTCG
TGCTCCAAGTCGGGGACGCCTGCATGCAAAATTTTAGCGGGGTCCTATAT
TGCGGGGATACCTAAGGCCAGATTAGAATTGTCCCTTCGCTCGACAAAGT
TACCCATTCTGCCCCAACGCTCATGACCAAAATCAACAAGTTGAATGTGG
AATATGCTTTGAGCGATGGATACTCGTCTGCTACAAATGGTTGGTCGAGG
CCATAGCACTGCGAGATGTTATTGGCACAAGAACGATACTTGATTGACCA
GGGATGTCAGTTGTCGGATAATAGTAGACGCTGTCCTCGCACGCAAGAAT
TTGCAGAGGGGTGTAAAAGTTTCCGCGTCATAATTGGTTGTTCATATATA
GGGAAGCGCGTTAGTGGGCCCCGATTTTCTTTCCCACCTATAGCTTCGTC
AATCACCCGTAGTAGGGCCGAACAACTCCCATGGTATCACCAACACCCCA
ATCCGGCAGGCGAAGACATATGTACACAACAGGTGTGCTTCCCAAGTCGC
CCAGGCATCCACCTTCCCGTTTTTCACATCTTCCTATGGGTGTAAGAACG
TCCATCTCTCTGCGCCATGCGAACTCGACGCTCGCTGGTGGTGAGGTGTG
TGTGTGTGTGTGTCTTGACATCTTCATGGAGATCGTTTTACGAAATACCA
CCCAAATCGGTCCCCTTCACCTCCGTTACACCTTTAGCTAAGGGTGTGGT
CGTATGTGGTGTAAGTCAGATCCTCCTGTCGTTATCTCCCGTGCCGGGTG
TCTCCCTGCACACTCGTCGTCCATGTCATTACCGAGGAACACGATTCGTT
TTTGTATCACCAAGCCAGTAAAGTTCCTCCACAACATGAACACCGTCATT
CCTCCAAACACGTTCAGACTGGGAAGGCAAAGATGGACCCACACTTCAGC
CCCTAGTGATAATCGTCCCGTTTCGTCTGTTCTTGTTATATGTCACGTTT
GCCCAGACATGAAGCAGTTACGAACGCCCAGGAGCACCCTCGGGGACGTG
TGTCACTCTAGGGATTACGAGGGCAGTGGGGTAGACTGTGGTCGCGACAC
CAAATCGGTGGAGGAAGAGGAACAGGGGGATGAGGAAGAGGAGGAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:425551..431746+ >mRNA_E-siliculosus-1a_M_contig98.17721.1 ID=mRNA_E-siliculosus-1a_M_contig98.17721.1|Name=mRNA_E-siliculosus-1a_M_contig98.17721.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:425551..431746+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCATCCCCTACTTCAGCCTTACGTCAATGCGTCCAAGGCTGTATTGGA
GAGTGCGTCTGCCGAAAGTCGCGTGTTTATCGACTCTTGCGGGGGGTCAG
GCATCGACGGAGAAGAGCACCGCATCTCTCTGGGAGGATGCCGACTCGAC
ATTCTCTTGGACGACCAGCTTCATAGAGTCGCCGTAGCTGCTTCCGTCCT
GTTGGGGGGTGGGAACAGGCCCCTGTTTGTCACGTCGTCACGCCCGCACT
CCACGCGGAGTGTGCACAGTCGCAAGGAACAGGAGATGGTGCTCATCGCC
CGCTGCTTGTATCCGGGTGGCGGTGGTGTTGTCGGGCGGGAAGAAGACGG
GAGGAGACATGTGGCAGTCAACCGTCAGTAAATGCATCCCCTACTTCAGC
CTTACGTCAATGCGTCCAAGGCTGTATTGGAGAGTGCGTCTGCCGAAAGT
CGCGTGTTTATCGACTCTTGCGGGGGGTCAGGCATCGACGGAGAAGAGCA
CCGCATCTCTCTGGGAGGATGCCGACTCGACATTCTCTTGGACGACCAGC
TTCATAGAGTCGCCGTAGCTGCTTCCGTCCTGTTGGGGGGTGGGAACAGG
CCCCTGTTTGTCACGTCGTCACGCCCGCACTCCACGCGGAGTGTGCACAG
TCGCAAGGAACAGGAGATGGTGCTCATCGCCCGCTGCTTGTATCCGGGTG
GCGGTGGTGTTGTCGGGCGGGAAGAAGACGGGAGGAGACATGTGGCAGTC
AACCGTCAGTAA back to top
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