mRNA_E-siliculosus-1a_M_contig98.17721.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17721.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17721.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17721.1 vs. uniprot
Match: D7G2S7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 2.580e-79
Identity = 117/139 (84.17%), Postives = 128/139 (92.09%), Query Frame = 2 
Query:   68 ASKAVLESASAESRVFIDSCGGSGIDGEEHRISLGGCRLDILLDDQLHRVAVAASVLLGGGNRPLFVTSSRPHSTRSVHSRKEQEMVLIARCLYPGGGGVVGREEDGRRHVAVNRQ*LHAIALVGRLKNLWPPYVDPDF 484
            A++A LESAS ESRVFIDSCGGSGI GEEHRI LGGCRLD LL+DQL +VAVAASVLLG GNRPL+  SS PH+TRSVHSRK+Q+++LIARCLYPGGGGVVGREEDGRRHVAVNRQ LHAIALVGRLKNLWPPYVDP+F
Sbjct:    2 AAEAALESASTESRVFIDSCGGSGIAGEEHRIPLGGCRLDNLLEDQLAKVAVAASVLLGNGNRPLYAASSHPHTTRSVHSRKDQQILLIARCLYPGGGGVVGREEDGRRHVAVNRQELHAIALVGRLKNLWPPYVDPEF 140
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2S7_ECTSI2.580e-7984.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:425551..431746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size381
Model size625
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17721.1prot_E-siliculosus-1a_M_contig98.17721.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 425588..425968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936564.8393636-UTR-E-siliculosus-1a_M_contig98:425550..4255871622936564.8393636-UTR-E-siliculosus-1a_M_contig98:425550..425587Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 425551..425587 +
1696251133.2086205-UTR-E-siliculosus-1a_M_contig98:425550..4255871696251133.2086205-UTR-E-siliculosus-1a_M_contig98:425550..425587Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 425551..425587 +
1622936564.8759375-UTR-E-siliculosus-1a_M_contig98:425968..4260351622936564.8759375-UTR-E-siliculosus-1a_M_contig98:425968..426035Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 425969..426035 +
1696251133.240003-UTR-E-siliculosus-1a_M_contig98:425968..4260351696251133.240003-UTR-E-siliculosus-1a_M_contig98:425968..426035Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 425969..426035 +
1622936564.888851-UTR-E-siliculosus-1a_M_contig98:431606..4317461622936564.888851-UTR-E-siliculosus-1a_M_contig98:431606..431746Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 431607..431746 +
1696251133.254571-UTR-E-siliculosus-1a_M_contig98:431606..4317461696251133.254571-UTR-E-siliculosus-1a_M_contig98:431606..431746Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 431607..431746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936564.860211-CDS-E-siliculosus-1a_M_contig98:425587..4259681622936564.860211-CDS-E-siliculosus-1a_M_contig98:425587..425968Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 425588..425968 +
1696251133.2236094-CDS-E-siliculosus-1a_M_contig98:425587..4259681696251133.2236094-CDS-E-siliculosus-1a_M_contig98:425587..425968Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 425588..425968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17721.1

>prot_E-siliculosus-1a_M_contig98.17721.1 ID=prot_E-siliculosus-1a_M_contig98.17721.1|Name=mRNA_E-siliculosus-1a_M_contig98.17721.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=127bp
MHPLLQPYVNASKAVLESASAESRVFIDSCGGSGIDGEEHRISLGGCRLD
ILLDDQLHRVAVAASVLLGGGNRPLFVTSSRPHSTRSVHSRKEQEMVLIA
RCLYPGGGGVVGREEDGRRHVAVNRQ*
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mRNA from alignment at E-siliculosus-1a_M_contig98:425551..431746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17721.1 ID=mRNA_E-siliculosus-1a_M_contig98.17721.1|Name=mRNA_E-siliculosus-1a_M_contig98.17721.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6196bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:425551..431746+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CATCAAATCCCACATCGAACCATTCCATACGTCCAACATGCATCCCCTAC
TTCAGCCTTACGTCAATGCGTCCAAGGCTGTATTGGAGAGTGCGTCTGCC
GAAAGTCGCGTGTTTATCGACTCTTGCGGGGGGTCAGGCATCGACGGAGA
AGAGCACCGCATCTCTCTGGGAGGATGCCGACTCGACATTCTCTTGGACG
ACCAGCTTCATAGAGTCGCCGTAGCTGCTTCCGTCCTGTTGGGGGGTGGG
AACAGGCCCCTGTTTGTCACGTCGTCACGCCCGCACTCCACGCGGAGTGT
GCACAGTCGCAAGGAACAGGAGATGGTGCTCATCGCCCGCTGCTTGTATC
CGGGTGGCGGTGGTGTTGTCGGGCGGGAAGAAGACGGGAGGAGACATGTG
GCAGTCAACCGTCAGTAACTCCACGCCATCGCCCTGGTAGGGCGTTTGAA
GAACCTGTGGCCCCCGTATGTCGATCCCGATTTCGGTGAGTGGGTGACCT
AGCGCGACGAGTGTTGGTTGTAAAGAACATCCTGCCATATCAGCGCGTCG
CTGTGGTCGTTAGCCTCAACACACGAGCGAGTGAGGGTTGCTCTGCGCTA
CAGCAGTGGCGGGTACGGATTAAGAGAGACTAGTCTATCGATGATAAAGT
TCCGAGCGAAGGGCGTCAAACTGCCTCGGATTGATCATGATAAATACATA
CATTTCACAGCAGTACGGTTTACAAGCAAGAGAAATTCGGGGTGTAGAGT
GGATTACTGGCTTTTCCCAACCCTCTCTTAAACCGTAGCCGCCGGTACAC
GATGCACTGTATGTGTTCGTAACCCTAAGTGATATGCCCACGTAAGTCTT
TGCAGCAATATGCCGTTTGATGTTTAGATGCTTGATGTCGTTCACACCGG
GTTGGGGGAAGAGCAGGAAGTGCCACGCCACGCAGCAGCAGAGCAGCTGC
CGTGGGGGCTCCGCACAATCACCCTTTTGTACGTACTACCCAATAGACAC
CTATCTGCGGAACACCTGAAACAGTCACCTCGACTACACATATCCGACAG
CAACGCAATACACGAACACTCCCTGGTTCTTTACGCGAAAGTAACTAACC
ATTCGTTGGATCTCGAGTATGCGTCACCTTCAGACAAGTATTCCGCAAAC
GCAACAAATCAATAATAATCCAAGGGGCAACCCGGCCACCGGGTCAAAAC
CCCTCCCAAACGTCCCATACCAAATAGGACAACGGCACTCTGAAAAGACA
CGATGAAAAAACCAAACAGGATAACACCGGCATCGCCATCAATCCGTGCT
ATCCTCCCAACACGTTTCCGTATCATCTGCCAAGTACCCACCAAAGCCCA
AAAGAGTAGGCCACAACCGCTGCTGTCTTATTACCCAATGAAGCCTAACA
CGAGTGTTCTGCAAATTTTCTCCTCCTACCGCCCTCCCCGCTCGACGAAC
AACTATCGATGATCTGAGCACCTAACTCCCTCCCTCAACCTTGATTCCGG
CGCATCGCGGCGCCCCCAGGATTGGAGGTGCATGGTGCAATCACCCTGAG
ACAACTGTTTTGCCAAACGCATCGGACGTGAAAAGCATGCTTGCAACCAA
CTCTTTGACTCTCATCAAGGCAAACTTAGCCTACTTGCACAAAACTCTTC
CGACTCTCCGAAAAACAAATATTCTCAATCATCACATACCACGCGTCGAT
AGGGTTCTCCCTCACGCTCAAGAAACTGGGGTCATCACGTCATGCAATAA
CCCCCCTCGCTCTGCACTCGCTGCGAGGGGCACGCCGCATAATCTACCTC
TCATTCTACGCTCGCGGAGAACACACCTGACGATCTACATAGCACATGCA
TCGAGAACTTATCATGCTGAGGCTTCTCCCCTCTTTCAAGACAAACACAT
TGATTCCTATCATGGGGCTTCTCCCCTTCTACAAGACAAACACTGTCATA
GATTTGGAGACGCGTTGCTACTGCGAATCCCTCAGTAAGGTGGATACGTC
TGGTACATGGGTCCACACCTACCTGCAGTAACAACGGAAATGTCACCTAC
AGCAGTATAACAGTGTCCTCCCCTCCCCATTTCCACCTCACGCACACAAG
GTGATACATCTGGTGCATGGGTCCACACCTATCTGCAGCAACAACAGAAA
TGTCACCTACAGCAGTATTACAGTGTCCTCCCCTCCCCATTTCTACCTCA
TGTTGACGCCAGCACAATTTTACCTGCGCCGGTGTCTGCAACTTTTGATA
CACCGGGTCCTGTGTACCCCCTTTTTTTCAGCCGACACGCTGGATACTGT
TTCACCCCTGTGCGTGAGTTTTCCTCGGCCGCAGGGAGCGCCTGTGCTGC
ATCCCCTCATTTGATACACCGGGTCCTGTGTACCCCTTCTCTTCTGCCGA
CACGCTAGATACTGTTTTACCTCTGCGTAAGTTTTCATCGGCTGCCGGGA
GCGCATGTGCTGCATCCCTTCATCTGATACACCTGGTCCTGTGTACCCCT
TCTGTTCAACCGACACGCTAGATACTGGTTTACCTCTGTGAGTGAATTTT
CATCGGGTGTGGGGAGCGCCTATGCTGCATCCCCTCCTTTGATACGCCTG
GTCCCGCGTACCCCTTTTCTTTCTGCCCCAGACAAAGTTTTCATCGCCCG
CGGACATCATGAAATGGAAGCGCCTGTACCGCGAATCCCCATCATAGAGT
GGCTGGTTTTTGGAGCCGAATTACCATCGTCGTACGAAACACCCGCGATA
ACACGCCTGGTTTTTACCATCGAAAAGACCAACAACAATTGCTCAACAAA
ACACCCACACTCAAGAATGGAAACGCCTGAACCGCGAATCCCCTTTCGAA
AATCATCGTTGGTCGTATCATCGTAAGCGAAGCTACCATCACTCTACGAA
CACCAAATCAGAAAATGGAAACGCCTTAACCGCGAATCCCCTGTAGAAAC
TATCGGTATCATTCGTCACAAGCAAAATCATTCAATATCACTCACGAACT
CAACCAGAAAGAAGCGCCCCACGGCAACGCCGCGTTGTTGTTGTCCCTCG
TTCAAAAGCACAGCAGATTTCGCGGTCTCGCCCTTGCTCCTCTGCGGCAG
TTCCACGTTCACCAGAATCGCCATGCAATCCTCCGGTTCTCCTGGAGCGA
GTACTCTTCCCGCGATCAACAGGCTCGTGTGTTGTGCCGCCCGCTACTTC
ACCGCCGACGCCGCCGCCCCTTTGCTGCCTTGTCATTGGGCCTGTCCCAA
CAGGTCGCTCATGTTTGTGGCCCCGAAGGATTAACCTCCAGGTTCCACCT
CCTGACACCTTGTCCCGTGTGCCCGGGGCAGTCAAGCTACCCCCAGCAGC
GCCTGTGCTAGAGCTGCCAACCGTACAGAAAAAGTCGATGGTCTGGAACC
CAACAAACCCACCATTTGCAGGGACGTCAAACGCCCGCACCGGTTCACCT
TCCGTGCCCGATCTACTGCTGCTCTCTCTTCCAGCGGCGTCATCTGTTCT
AACGCCAGCCGCAGCGTACAGCTCTGATAGGCAGCTGCCTGGCGGCGAGA
TTCCGACAATCCCACCGCAGGATGCGGCGCGTCTTCCAGCACCGCCTGAC
CCCCCTCCGCTTCCGCAATCTGGCATTGCCTGCAGCAGCGATGACATCTT
GTCCATCACGCCCTGCATCCAAACTCGCTGCACATTGCTTCCCAGCGGGG
GGGCAGCGGATGGGTGGCCCGGGGGACCTACTCCCCCGACTCCACCGGGT
GGCACCCCAAACCGTGTGCCCGGCGCGGCTCCTCCGCGCCCTGAGGCGTT
GCCAGCGCCGCTTGACTCCCCCTCTTCTGCCCCCGCCGCCCTGGCAGAAG
GCATCTGAAGTTGCCCTAGCTTCTCCAAGACAGCTGACAGCACCTTGCTT
TGCTCCTCCAGCCTCGTGGACAGCTCCGCCACGCGCGTGTCGATCGTGGT
TCCGCCGCTGTCGCTCGCTGGGGCATCGCCTAACTTGGTTTTTGCAAAGG
GGCTCCTTCGAAGGAAAACTCTAGAGTGTTCCGTAACCCTAAGTGATATG
CCCATGTAAGTCTTTGCAGCAATATGCCGTTTGATGTTTAGATGCTTGAT
GTCGTTCACACCGGGTAGGGGGTAAGAGCAGGAAGTGCCACGCCACGCAG
CAGCAGAGCAGCTGCCGTGGGGGCTCCGCACAATCACCCTTTTGTACGTA
CTACCCAATAGACACCTATCTGCAGAACACCTGAAACAGTCACCTCGACT
ACACATATCCGACAACGACGCAATACACGAACAGTATGTACATCGTGCTA
CGTTTTCGCCCCGTGTTGGAAGTCCACAATACAAGGGCGTGAGGCGTCAA
TATTTTTTTTGTTTTGTAGAGAAAACGAAAAGTACCTGCAGTAGACTTGT
GCATTGTTAGATACATTGTTAACTGACGAGGGCGCTACTTTGTGCATTGT
ACCGTGACCTGGCGAGGACGCTAGTATGGGACACACTCCACGTTGATGGG
CGTGGCGACTTTTCTGTTCAGAGGCGCATAGTGCAAACAACGCTCAACGT
CCAAATATGCAACCTCAAACAAAGAGTTTGCCTGACGCTGTCTGCCACCA
AGTTCCGTTTTTCGCAGCAAAAAAGAAGAAGCGTTGACCGACCGAGCGAG
ACCCAACCACACGCGCATCTCTCCTCTCTTTTCCTCCGCCCATAGATAGC
TAACAGCAGCAGTGTAGTATAGTTCACACCCTGCTCCTCCTGCCGTCTCG
CCCTCGCTGTGGTGTGTGTCTCACTCCCCCTTTTCCATATGGCTCCGTGG
TGTCTTGTGTTAGGGTTACTGCCTACGTCCCCAGCCCGCTTGCTGCAGCA
AAACAACTGAGAGACCAACAACAACAACCAAACGTGTATGCATCTCTCCT
CTCGCTCCTCCTCTGCCGATAGCTAACAGAAGTAGTATAGGGCACACACT
GATCCCGCCTCGCTCTCGCCCAAACTCTCCCTGTGGTGTGCGTCTTCCTC
CTCTCCGGTCCTTGACGATGTATGTCTGGTCCGCCGATAGAAGCTGTCTT
TCGCGCGAATAATCCTATGCCTACGTACGTCTGGTCCCAATCAAGCCTCG
TGCTCCAAGTCGGGGACGCCTGCATGCAAAATTTTAGCGGGGTCCTATAT
TGCGGGGATACCTAAGGCCAGATTAGAATTGTCCCTTCGCTCGACAAAGT
TACCCATTCTGCCCCAACGCTCATGACCAAAATCAACAAGTTGAATGTGG
AATATGCTTTGAGCGATGGATACTCGTCTGCTACAAATGGTTGGTCGAGG
CCATAGCACTGCGAGATGTTATTGGCACAAGAACGATACTTGATTGACCA
GGGATGTCAGTTGTCGGATAATAGTAGACGCTGTCCTCGCACGCAAGAAT
TTGCAGAGGGGTGTAAAAGTTTCCGCGTCATAATTGGTTGTTCATATATA
GGGAAGCGCGTTAGTGGGCCCCGATTTTCTTTCCCACCTATAGCTTCGTC
AATCACCCGTAGTAGGGCCGAACAACTCCCATGGTATCACCAACACCCCA
ATCCGGCAGGCGAAGACATATGTACACAACAGGTGTGCTTCCCAAGTCGC
CCAGGCATCCACCTTCCCGTTTTTCACATCTTCCTATGGGTGTAAGAACG
TCCATCTCTCTGCGCCATGCGAACTCGACGCTCGCTGGTGGTGAGGTGTG
TGTGTGTGTGTGTCTTGACATCTTCATGGAGATCGTTTTACGAAATACCA
CCCAAATCGGTCCCCTTCACCTCCGTTACACCTTTAGCTAAGGGTGTGGT
CGTATGTGGTGTAAGTCAGATCCTCCTGTCGTTATCTCCCGTGCCGGGTG
TCTCCCTGCACACTCGTCGTCCATGTCATTACCGAGGAACACGATTCGTT
TTTGTATCACCAAGCCAGTAAAGTTCCTCCACAACATGAACACCGTCATT
CCTCCAAACACGTTCAGACTGGGAAGGCAAAGATGGACCCACACTTCAGC
CCCTAGTGATAATCGTCCCGTTTCGTCTGTTCTTGTTATATGTCACGTTT
GCCCAGACATGAAGCAGTTACGAACGCCCAGGAGCACCCTCGGGGACGTG
TGTCACTCTAGGGATTACGAGGGCAGTGGGGTAGACTGTGGTCGCGACAC
CAAATCGGTGGAGGAAGAGGAACAGGGGGATGAGGAAGAGGAGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:425551..431746+

>mRNA_E-siliculosus-1a_M_contig98.17721.1 ID=mRNA_E-siliculosus-1a_M_contig98.17721.1|Name=mRNA_E-siliculosus-1a_M_contig98.17721.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:425551..431746+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCATCCCCTACTTCAGCCTTACGTCAATGCGTCCAAGGCTGTATTGGA
GAGTGCGTCTGCCGAAAGTCGCGTGTTTATCGACTCTTGCGGGGGGTCAG
GCATCGACGGAGAAGAGCACCGCATCTCTCTGGGAGGATGCCGACTCGAC
ATTCTCTTGGACGACCAGCTTCATAGAGTCGCCGTAGCTGCTTCCGTCCT
GTTGGGGGGTGGGAACAGGCCCCTGTTTGTCACGTCGTCACGCCCGCACT
CCACGCGGAGTGTGCACAGTCGCAAGGAACAGGAGATGGTGCTCATCGCC
CGCTGCTTGTATCCGGGTGGCGGTGGTGTTGTCGGGCGGGAAGAAGACGG
GAGGAGACATGTGGCAGTCAACCGTCAGTAAATGCATCCCCTACTTCAGC
CTTACGTCAATGCGTCCAAGGCTGTATTGGAGAGTGCGTCTGCCGAAAGT
CGCGTGTTTATCGACTCTTGCGGGGGGTCAGGCATCGACGGAGAAGAGCA
CCGCATCTCTCTGGGAGGATGCCGACTCGACATTCTCTTGGACGACCAGC
TTCATAGAGTCGCCGTAGCTGCTTCCGTCCTGTTGGGGGGTGGGAACAGG
CCCCTGTTTGTCACGTCGTCACGCCCGCACTCCACGCGGAGTGTGCACAG
TCGCAAGGAACAGGAGATGGTGCTCATCGCCCGCTGCTTGTATCCGGGTG
GCGGTGGTGTTGTCGGGCGGGAAGAAGACGGGAGGAGACATGTGGCAGTC
AACCGTCAGTAA
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