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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17707.1 vs. uniprot
Match: D7FI18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI18_ECTSI) HSP 1 Score: 176 bits (447), Expect = 3.170e-53 Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 1 Query: 277 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXX-----HVDGCHVAMA 636
MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAV VGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXX HVDGCHVAMA
Sbjct: 1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMA 125
BLAST of mRNA_E-siliculosus-1a_M_contig98.17707.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE) HSP 1 Score: 185 bits (469), Expect = 2.030e-51 Identity = 98/120 (81.67%), Postives = 98/120 (81.67%), Query Frame = 1 Query: 277 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXHVDGCHVAMA 636
MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKG HVDGCHVAMA
Sbjct: 1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGAGAGGRRYHRTGGDGGSAVVVHVDGCHVAMA 120
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 390 |
| Model size | 666 |
| Exons | 2 |
| Ec32 ortholog | Ec-00_000690.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936561.8158529-UTR-E-siliculosus-1a_M_contig98:282810..283086 | 1622936561.8158529-UTR-E-siliculosus-1a_M_contig98:282810..283086 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 282811..283086 + |
| 1696251131.9681625-UTR-E-siliculosus-1a_M_contig98:282810..283086 | 1696251131.9681625-UTR-E-siliculosus-1a_M_contig98:282810..283086 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 282811..283086 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936561.832456-CDS-E-siliculosus-1a_M_contig98:283086..283197 | 1622936561.832456-CDS-E-siliculosus-1a_M_contig98:283086..283197 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 283087..283197 + |
| 1696251131.9780943-CDS-E-siliculosus-1a_M_contig98:283086..283197 | 1696251131.9780943-CDS-E-siliculosus-1a_M_contig98:283086..283197 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 283087..283197 + |
| 1622936561.8448706-CDS-E-siliculosus-1a_M_contig98:284432..284711 | 1622936561.8448706-CDS-E-siliculosus-1a_M_contig98:284432..284711 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 284433..284711 + |
| 1696251131.9888697-CDS-E-siliculosus-1a_M_contig98:284432..284711 | 1696251131.9888697-CDS-E-siliculosus-1a_M_contig98:284432..284711 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 284433..284711 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17707.1 >prot_E-siliculosus-1a_M_contig98.17707.1 ID=prot_E-siliculosus-1a_M_contig98.17707.1|Name=mRNA_E-siliculosus-1a_M_contig98.17707.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=130bp
MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLG
SLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGGGGGGRRYHRT
GGDGGSAVVVHVDGCHVAMAAAAAAAAAGG back to topmRNA from alignment at E-siliculosus-1a_M_contig98:282811..284711+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig98.17707.1 ID=mRNA_E-siliculosus-1a_M_contig98.17707.1|Name=mRNA_E-siliculosus-1a_M_contig98.17707.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1901bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:282811..284711+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCTCACGCACGTCTCCTGTTCTCGCTCCTACCGAACGACACAGCAGCCAC
AATCTCCTCCCTAGCTGGCGAGGTGCTCTACGCTCCGCGATCCACAGGGG
AAGTTTTTGGTCGGATCCTTGCTATTCTCGGGGCTCGAGGGCTGTGCCCG
CGTGCTCCGCCAGCCAGAAGTGCCAACGAAAAGGTCGGAGTTGAACCTTG
TTGAGAGTCGAGTCACCTGTCCTGTGCAGTACACTAGTACTAGTGTCAGG
CGGCAGGCGGCGGCGCGGGATAAAAAATGGAGGCGATCGAGCTGCTGGGG
GGGATGGTGAACAGCGTGCTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCG
GCTGGTACCCGTGGGTGGGAGCGAAGCCGGGCAGCAGGTTAGCGACACCT
GTTTTTTATCAACGCACCACTTCTTCTTGCCCTCGACACGGGCGCTGTTT
TTCTCTTCTCTCACGCAAGAATTTGTTGACGATTTTCCGTAATGATCTGA
GTCGTCTTGTTCTCGTCCCCTCTGGCGGTATGCATAGTAGATGATCCTAC
AAATGTAGCCTCCGTCGCCCCGCCGTCATGTAAGGGCGGAAGAAATGACC
GCGTGATTATGACTGCCACATTTTTGACGACATGAGTGACGACGACAAAA
AAAGCCGTTTTGGCGCCCCCGGGAAAAACTCTTACCTACTTCGGCGCCCC
TGTGTATACGAAAGCCGTTGCACCTTCTCCACATCTCCACTACATCCCCT
ATCGTGATCTCAATACACTCCCAGCAGCCTCTCTCGATTGACTTGATCTA
GCTGGCCAGGGCTGGATTCCGACGAGGCTAGGAACTGTCACCTGTGGATC
CTAGCGTGATTCACAAGCAAATAAAGTGTTGGCATTGGGTGGTGGCCACT
TGGGAGGCAGTCAGTCGTAACATCAAACAAGAGGCACAACGGACAACAAT
GGCTCGCATTTCGTTGATTGCGGATCCATTTCTTGTATCCGGATCGATGT
TACTCTCCAAGAATGCTTTGTGCCGACATCTTACCTTTAGTCCTCGTGTG
TTTGTGCAGTGAGATCGTCATCGGAAATGGTGCTGTGCGATGGGCTGGTG
CTATTATACTTAATACATGTATTTCTTTCTTTGGCGCGCACACACGCTGG
GTGGGGTCACGGAATCGCTTTCTACGCCCCCCCCCAAAAGTTCGTCCGCC
GGCACGATCGACCCTTCTCCTTCCTCCCACGCCTTATTTCCCTCGAGGAT
GAAGAGGATCGTCTTTTTCTCATAGAGGCTTGGTGACTGTGATTCTTTGT
CGAGAAGGCGTATAGCCGTGGTCCTTCAAGCACACGCACACGCCCAAACC
CCGTCGAAGCGTTGCCTGTGGTTCCTGCTGCGCACGCTGCTCCCGGCTCT
GCTGGAGAATGCCCCGTTGCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
GGACACTTTTCCCATGCATGCGTGCACACTTCGAAGTAGTAGTAAATTCC
AAGCAAATGAATTTCCAACGCACATCCCCCCCCCTGGAAGGAAGTAAGCG
ACAAACAAATTATGTAAGTTCCAACGTATATGCGTCCCCTCCCTTTTTCC
CCCTTCCCAAATGAATGTACAGGTCGCCACCGCGGTTGGCGTAGGCCTCG
ACAACCTCGGCTCTCTCTGCTCACAGGCCGGCCTGGACCGTTGGGAGCTT
CTGGGCCTCGCCGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTC
CTCCAACAGCGTGTACGGCAAGGGCGGCGGCGGCGGCGGCGGTAGGCGGT
ATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTGCACGTCGAC
GGCTGCCACGTGGCGATGGCGGCTGCGGCGGCGGCTGCGGCGGCAGGCGG
C back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:282811..284711+ >mRNA_E-siliculosus-1a_M_contig98.17707.1 ID=mRNA_E-siliculosus-1a_M_contig98.17707.1|Name=mRNA_E-siliculosus-1a_M_contig98.17707.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:282811..284711+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGCGTGCTGGAGTT
CCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGGTGGGAGCGAAG
CCGGGCAGCAGATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGC
GTGCTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGG
TGGGAGCGAAGCCGGGCAGCAGGTCGCCACCGCGGTTGGCGTAGGCCTCG
ACAACCTCGGCTCTCTCTGCTCACAGGCCGGCCTGGACCGTTGGGAGCTT
CTGGGCCTCGCCGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTC
CTCCAACAGCGTGTACGGCAAGGGCGGCGGCGGCGGCGGCGGTAGGCGGT
ATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTGCACGTCGAC
GGCTGCCACGTGGCGATGGCGGCTGCGGCGGCGGCTGCGGCGGCAGGCGG
CGTCGCCACCGCGGTTGGCGTAGGCCTCGACAACCTCGGCTCTCTCTGCT
CACAGGCCGGCCTGGACCGTTGGGAGCTTCTGGGCCTCGCCGTGCTGTCG
GCGATCACCGTCTACCGCAAGGAGCTGTCCTCCAACAGCGTGTACGGCAA
GGGCGGCGGCGGCGGCGGCGGTAGGCGGTATCACCGCACCGGCGGCGACG
GCGGCAGCGCCGTCGTCGTGCACGTCGACGGCTGCCACGTGGCGATGGCG
GCTGCGGCGGCGGCTGCGGCGGCAGGCGGC back to top
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