mRNA_E-siliculosus-1a_M_contig98.17707.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17707.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17707.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17707.1 vs. uniprot
Match: D7FI18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI18_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 3.170e-53
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:  277 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXX-----HVDGCHVAMA 636
            MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAV VGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXX     HVDGCHVAMA
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMA 125
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17707.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 2.030e-51
Identity = 98/120 (81.67%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:  277 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXHVDGCHVAMA 636
            MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKG                      HVDGCHVAMA
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGAGAGGRRYHRTGGDGGSAVVVHVDGCHVAMA 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI18_ECTSI3.170e-5395.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP0_9PHAE2.030e-5181.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:282811..284711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size390
Model size666
Exons2
Ec32 orthologEc-00_000690.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17707.1prot_E-siliculosus-1a_M_contig98.17707.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 283087..284711 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936561.8158529-UTR-E-siliculosus-1a_M_contig98:282810..2830861622936561.8158529-UTR-E-siliculosus-1a_M_contig98:282810..283086Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 282811..283086 +
1696251131.9681625-UTR-E-siliculosus-1a_M_contig98:282810..2830861696251131.9681625-UTR-E-siliculosus-1a_M_contig98:282810..283086Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 282811..283086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936561.832456-CDS-E-siliculosus-1a_M_contig98:283086..2831971622936561.832456-CDS-E-siliculosus-1a_M_contig98:283086..283197Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 283087..283197 +
1696251131.9780943-CDS-E-siliculosus-1a_M_contig98:283086..2831971696251131.9780943-CDS-E-siliculosus-1a_M_contig98:283086..283197Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 283087..283197 +
1622936561.8448706-CDS-E-siliculosus-1a_M_contig98:284432..2847111622936561.8448706-CDS-E-siliculosus-1a_M_contig98:284432..284711Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 284433..284711 +
1696251131.9888697-CDS-E-siliculosus-1a_M_contig98:284432..2847111696251131.9888697-CDS-E-siliculosus-1a_M_contig98:284432..284711Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 284433..284711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17707.1

>prot_E-siliculosus-1a_M_contig98.17707.1 ID=prot_E-siliculosus-1a_M_contig98.17707.1|Name=mRNA_E-siliculosus-1a_M_contig98.17707.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=130bp
MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLG
SLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGGGGGGRRYHRT
GGDGGSAVVVHVDGCHVAMAAAAAAAAAGG
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mRNA from alignment at E-siliculosus-1a_M_contig98:282811..284711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17707.1 ID=mRNA_E-siliculosus-1a_M_contig98.17707.1|Name=mRNA_E-siliculosus-1a_M_contig98.17707.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1901bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:282811..284711+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCTCACGCACGTCTCCTGTTCTCGCTCCTACCGAACGACACAGCAGCCAC
AATCTCCTCCCTAGCTGGCGAGGTGCTCTACGCTCCGCGATCCACAGGGG
AAGTTTTTGGTCGGATCCTTGCTATTCTCGGGGCTCGAGGGCTGTGCCCG
CGTGCTCCGCCAGCCAGAAGTGCCAACGAAAAGGTCGGAGTTGAACCTTG
TTGAGAGTCGAGTCACCTGTCCTGTGCAGTACACTAGTACTAGTGTCAGG
CGGCAGGCGGCGGCGCGGGATAAAAAATGGAGGCGATCGAGCTGCTGGGG
GGGATGGTGAACAGCGTGCTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCG
GCTGGTACCCGTGGGTGGGAGCGAAGCCGGGCAGCAGGTTAGCGACACCT
GTTTTTTATCAACGCACCACTTCTTCTTGCCCTCGACACGGGCGCTGTTT
TTCTCTTCTCTCACGCAAGAATTTGTTGACGATTTTCCGTAATGATCTGA
GTCGTCTTGTTCTCGTCCCCTCTGGCGGTATGCATAGTAGATGATCCTAC
AAATGTAGCCTCCGTCGCCCCGCCGTCATGTAAGGGCGGAAGAAATGACC
GCGTGATTATGACTGCCACATTTTTGACGACATGAGTGACGACGACAAAA
AAAGCCGTTTTGGCGCCCCCGGGAAAAACTCTTACCTACTTCGGCGCCCC
TGTGTATACGAAAGCCGTTGCACCTTCTCCACATCTCCACTACATCCCCT
ATCGTGATCTCAATACACTCCCAGCAGCCTCTCTCGATTGACTTGATCTA
GCTGGCCAGGGCTGGATTCCGACGAGGCTAGGAACTGTCACCTGTGGATC
CTAGCGTGATTCACAAGCAAATAAAGTGTTGGCATTGGGTGGTGGCCACT
TGGGAGGCAGTCAGTCGTAACATCAAACAAGAGGCACAACGGACAACAAT
GGCTCGCATTTCGTTGATTGCGGATCCATTTCTTGTATCCGGATCGATGT
TACTCTCCAAGAATGCTTTGTGCCGACATCTTACCTTTAGTCCTCGTGTG
TTTGTGCAGTGAGATCGTCATCGGAAATGGTGCTGTGCGATGGGCTGGTG
CTATTATACTTAATACATGTATTTCTTTCTTTGGCGCGCACACACGCTGG
GTGGGGTCACGGAATCGCTTTCTACGCCCCCCCCCAAAAGTTCGTCCGCC
GGCACGATCGACCCTTCTCCTTCCTCCCACGCCTTATTTCCCTCGAGGAT
GAAGAGGATCGTCTTTTTCTCATAGAGGCTTGGTGACTGTGATTCTTTGT
CGAGAAGGCGTATAGCCGTGGTCCTTCAAGCACACGCACACGCCCAAACC
CCGTCGAAGCGTTGCCTGTGGTTCCTGCTGCGCACGCTGCTCCCGGCTCT
GCTGGAGAATGCCCCGTTGCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
GGACACTTTTCCCATGCATGCGTGCACACTTCGAAGTAGTAGTAAATTCC
AAGCAAATGAATTTCCAACGCACATCCCCCCCCCTGGAAGGAAGTAAGCG
ACAAACAAATTATGTAAGTTCCAACGTATATGCGTCCCCTCCCTTTTTCC
CCCTTCCCAAATGAATGTACAGGTCGCCACCGCGGTTGGCGTAGGCCTCG
ACAACCTCGGCTCTCTCTGCTCACAGGCCGGCCTGGACCGTTGGGAGCTT
CTGGGCCTCGCCGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTC
CTCCAACAGCGTGTACGGCAAGGGCGGCGGCGGCGGCGGCGGTAGGCGGT
ATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTGCACGTCGAC
GGCTGCCACGTGGCGATGGCGGCTGCGGCGGCGGCTGCGGCGGCAGGCGG
C
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:282811..284711+

>mRNA_E-siliculosus-1a_M_contig98.17707.1 ID=mRNA_E-siliculosus-1a_M_contig98.17707.1|Name=mRNA_E-siliculosus-1a_M_contig98.17707.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:282811..284711+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGCGTGCTGGAGTT
CCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGGTGGGAGCGAAG
CCGGGCAGCAGATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGC
GTGCTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGG
TGGGAGCGAAGCCGGGCAGCAGGTCGCCACCGCGGTTGGCGTAGGCCTCG
ACAACCTCGGCTCTCTCTGCTCACAGGCCGGCCTGGACCGTTGGGAGCTT
CTGGGCCTCGCCGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTC
CTCCAACAGCGTGTACGGCAAGGGCGGCGGCGGCGGCGGCGGTAGGCGGT
ATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTGCACGTCGAC
GGCTGCCACGTGGCGATGGCGGCTGCGGCGGCGGCTGCGGCGGCAGGCGG
CGTCGCCACCGCGGTTGGCGTAGGCCTCGACAACCTCGGCTCTCTCTGCT
CACAGGCCGGCCTGGACCGTTGGGAGCTTCTGGGCCTCGCCGTGCTGTCG
GCGATCACCGTCTACCGCAAGGAGCTGTCCTCCAACAGCGTGTACGGCAA
GGGCGGCGGCGGCGGCGGCGGTAGGCGGTATCACCGCACCGGCGGCGACG
GCGGCAGCGCCGTCGTCGTGCACGTCGACGGCTGCCACGTGGCGATGGCG
GCTGCGGCGGCGGCTGCGGCGGCAGGCGGC
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