mRNA_E-siliculosus-1a_M_contig98.17706.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17706.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17706.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 2.130e-72
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 2 
Query:  161 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK 529
            MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLI L  +PAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK
Sbjct:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK 123
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 176 bits (447), Expect = 1.900e-50
Identity = 88/125 (70.40%), Postives = 107/125 (85.60%), Query Frame = 2 
Query:  128 MDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREED 502
            MD Q+++ R   RLPPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVY+DIYDAK AVDHLSGFNVCGRYLI L  +P +MAK+MDQ+ +++ELEEL+AK    R+ D
Sbjct:    1 MDPQQNR-RANARLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELEELKAKYLAERQND 124
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.070e-49
Identity = 86/115 (74.78%), Postives = 98/115 (85.22%), Query Frame = 2 
Query:  152 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVARE 496
            RR  RLPPEVNR +YVRNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVY+DIYDAKAAVDHLSGFNVCGRYLI L  +  K  KR+D+  K++E+EE++AK  V  E
Sbjct:    7 RRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGE 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.690e-48
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 2 
Query:  164 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREE 499
            RLPPEVNR +Y+RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLI L  + A+M KR+D   K++ELEEL+AK  V+ EE
Sbjct:   12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELEELKAKFNVSGEE 123
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.840e-48
Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 2 
Query:  164 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREEDA 505
            RLPPEVNR +YVRNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L  + ++M KRMD   K+KELEEL+ K  V+ +E A
Sbjct:   14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELEELKQKYNVSADEVA 127
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: R1DMS8_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMS8_EMIHU)

HSP 1 Score: 169 bits (428), Expect = 1.430e-47
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 2 
Query:  152 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKV 487
            R  MRLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L  +  KM KR+D + ++KEL E+RAKL +
Sbjct:    7 RASMRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQKELAEMRAKLGI 118
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.820e-47
Identity = 83/124 (66.94%), Postives = 100/124 (80.65%), Query Frame = 2 
Query:  125 AMDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVARE 496
            +MD      R   RLPPEVNR VYVRNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVY+DIYDAK AVDHL+GFNVCGRYL+ L  + +KM +R+D Q K++ELEEL+ K  +  E
Sbjct:    3 SMDSGAGSRRGNARLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKMQERIDNQRKRQELEELKKKYNIQTE 126
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A7S2JD52_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JD52_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 7.570e-47
Identity = 81/112 (72.32%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:  152 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKV 487
            R+  RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+ QDTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L  +  KM KR+D + + KEL E+RA+  +
Sbjct:    6 RQQQRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAQDTRGTAFVVYEDIYDAKTAVDHLSGFNVCGRYLVVLYFQQTKMQKRLDTEREMKELAEMRARFGI 117
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A0M0JX52_9EUKA (Pre-mRNA branch site p14-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX52_9EUKA)

HSP 1 Score: 166 bits (421), Expect = 1.490e-46
Identity = 81/114 (71.05%), Postives = 97/114 (85.09%), Query Frame = 2 
Query:  146 KDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKV 487
            + R+ +RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVY+DI+DAK AVDHLSGFNVCGRYL+ L  +  KM KR D + + KEL E+RAKL +
Sbjct:    4 RQRQQLRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAADTRGTAFVVYEDIFDAKTAVDHLSGFNVCGRYLVVLYYQQTKMQKRQDTEREMKELAEMRAKLGI 117
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match: A0A7S3SDL9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDL9_9SPIT)

HSP 1 Score: 166 bits (420), Expect = 2.160e-46
Identity = 80/112 (71.43%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:  146 KDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKL 481
            + R  +RLPPEVNRA+YVRNLPFKISA+EMYDIFGK+GA+RQ+RLG   DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L  +  KM KR+D + +++EL E+RAKL
Sbjct:   11 RQRATLRLPPEVNRALYVRNLPFKISAEEMYDIFGKFGALRQVRLGSAPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQRELAEMRAKL 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W6_ECTSI2.130e-7296.75RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6S9GFW4_HETAK1.900e-5070.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YN30_9STRA4.070e-4974.78RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2C985_9STRA1.690e-4874.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DAY0_9STRA4.840e-4872.81Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
R1DMS8_EMIHU1.430e-4774.11RRM domain-containing protein n=1 Tax=Emiliania hu... [more]
A0A7S2S8J7_9STRA2.820e-4766.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2JD52_9EUKA7.570e-4772.32Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0M0JX52_9EUKA1.490e-4671.05Pre-mRNA branch site p14-like protein n=1 Tax=Chry... [more]
A0A7S3SDL9_9SPIT2.160e-4671.43Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:277200..282649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size405
Model size1383
Exons8
Ec32 orthologEc-23_002040.1
Ec32 ortholog descriptionRNA recognition motif domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EC3.5.2.2
EggNOG OGsKOG0114@1,KOG0114@2759
EggNOG free text desc.RNA splicing
GOsGO:0000375,GO:0000377,GO:0000398,GO:0001701,GO:0001824,GO:0001825,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048646,GO:0048856,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
KEGG ModuleM00046,M00352
KEGG Pathwayko00240,ko00410,ko00770,ko00983,ko01100,ko03040,map00240,map00410,map00770,map00983,map01100,map03040
KEGG ReactionR02269,R03055,R08227
KEGG koko:K01464,ko:K12833
KEGG rclassRC00632,RC00680
Preferred nameSF3B6
Seed eggNOG ortholog2880.D7G0W6
Seed ortholog evalue3.6e-59
Seed ortholog score234.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17706.1prot_E-siliculosus-1a_M_contig98.17706.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 278078..282522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936561.6308053-UTR-E-siliculosus-1a_M_contig98:277199..2775251622936561.6308053-UTR-E-siliculosus-1a_M_contig98:277199..277525Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 277200..277525 -
1696251131.8517702-UTR-E-siliculosus-1a_M_contig98:277199..2775251696251131.8517702-UTR-E-siliculosus-1a_M_contig98:277199..277525Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 277200..277525 -
1622936561.6436875-UTR-E-siliculosus-1a_M_contig98:277552..2780771622936561.6436875-UTR-E-siliculosus-1a_M_contig98:277552..278077Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 277553..278077 -
1696251131.8647246-UTR-E-siliculosus-1a_M_contig98:277552..2780771696251131.8647246-UTR-E-siliculosus-1a_M_contig98:277552..278077Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 277553..278077 -
1622936561.7687676-UTR-E-siliculosus-1a_M_contig98:282522..2826491622936561.7687676-UTR-E-siliculosus-1a_M_contig98:282522..282649Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 282523..282649 -
1696251131.9579785-UTR-E-siliculosus-1a_M_contig98:282522..2826491696251131.9579785-UTR-E-siliculosus-1a_M_contig98:282522..282649Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 282523..282649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936561.6577685-CDS-E-siliculosus-1a_M_contig98:278077..2781381622936561.6577685-CDS-E-siliculosus-1a_M_contig98:278077..278138Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 278078..278138 -
1696251131.8800695-CDS-E-siliculosus-1a_M_contig98:278077..2781381696251131.8800695-CDS-E-siliculosus-1a_M_contig98:278077..278138Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 278078..278138 -
1622936561.677443-CDS-E-siliculosus-1a_M_contig98:278996..2790581622936561.677443-CDS-E-siliculosus-1a_M_contig98:278996..279058Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 278997..279058 -
1696251131.8889327-CDS-E-siliculosus-1a_M_contig98:278996..2790581696251131.8889327-CDS-E-siliculosus-1a_M_contig98:278996..279058Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 278997..279058 -
1622936561.691439-CDS-E-siliculosus-1a_M_contig98:279498..2795131622936561.691439-CDS-E-siliculosus-1a_M_contig98:279498..279513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 279499..279513 -
1696251131.8976972-CDS-E-siliculosus-1a_M_contig98:279498..2795131696251131.8976972-CDS-E-siliculosus-1a_M_contig98:279498..279513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 279499..279513 -
1622936561.7081802-CDS-E-siliculosus-1a_M_contig98:279639..2797621622936561.7081802-CDS-E-siliculosus-1a_M_contig98:279639..279762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 279640..279762 -
1696251131.9066448-CDS-E-siliculosus-1a_M_contig98:279639..2797621696251131.9066448-CDS-E-siliculosus-1a_M_contig98:279639..279762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 279640..279762 -
1622936561.7230487-CDS-E-siliculosus-1a_M_contig98:280370..2804401622936561.7230487-CDS-E-siliculosus-1a_M_contig98:280370..280440Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 280371..280440 -
1696251131.9156284-CDS-E-siliculosus-1a_M_contig98:280370..2804401696251131.9156284-CDS-E-siliculosus-1a_M_contig98:280370..280440Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 280371..280440 -
1622936561.7365382-CDS-E-siliculosus-1a_M_contig98:281331..2813721622936561.7365382-CDS-E-siliculosus-1a_M_contig98:281331..281372Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 281332..281372 -
1696251131.9348354-CDS-E-siliculosus-1a_M_contig98:281331..2813721696251131.9348354-CDS-E-siliculosus-1a_M_contig98:281331..281372Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 281332..281372 -
1622936561.7506711-CDS-E-siliculosus-1a_M_contig98:282489..2825221622936561.7506711-CDS-E-siliculosus-1a_M_contig98:282489..282522Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 282490..282522 -
1696251131.9458287-CDS-E-siliculosus-1a_M_contig98:282489..2825221696251131.9458287-CDS-E-siliculosus-1a_M_contig98:282489..282522Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 282490..282522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17706.1

>prot_E-siliculosus-1a_M_contig98.17706.1 ID=prot_E-siliculosus-1a_M_contig98.17706.1|Name=mRNA_E-siliculosus-1a_M_contig98.17706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=135bp
MDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIR
LGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAK
RMDQQAKKKELEELRAKLKVAREEDAAGDTPASK*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig98:277200..282649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17706.1 ID=mRNA_E-siliculosus-1a_M_contig98.17706.1|Name=mRNA_E-siliculosus-1a_M_contig98.17706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5450bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:277200..282649- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCCTGCTACTTCTTCCTAGGGTCGAGTCTTGCTTATAGTTTGTAGCCCC
TGATTAGTGGGCGCCTTCCATTGTAGAACGAGAGAGAACAAGACCGCGAC
CTCTGGCTCTGGCAAAAGCAGCGAGCCATGGACGGCCAAAGGGACAAAGA
CAGGAGACCGGTGAGGACACGATAGCACTATAGCAGGACACCCGAAGAAG
ACCAGCAAAGGATCGTCGTGGATAGCCATGTTTCGCATTTTCGTAGTCGG
GTGGATAGACGCACTCGGAAGCAAGGAGAGAAGGGTTGTGGATTGTTTCG
GTGCTACTACTTGTAGTGTTGTCCAGAGCGGCTGCTGTGTGCGGGGGAGA
GGATCTCGCCGCCATCGTGTCGGCCAACACCACACACCACATGGCATTGG
ACAGCACCACCACATTCAATGCCAAAGGTGCAGATTAAACTACAACCGAG
TGCCTCAAGGGCGGAGGAGAGACACCCTTTTGCAATCCGTTCATTCGTGT
TTTGTTTTAAATATCAAACTTGAGGGAAGCCGGGTGCACACAGCAAGCAG
CGTAGTATTTAGATTCAGAGCAGCAGTAGCCTCCATCCCTACGCCCTGAA
GCCCTCGTGTGTGCGCGCACGATCGGCACCCCTACAGCCGCAAGCACTTG
TAATATAATACAAGTCGAACCATGGGGCGTATATGAGTTCTATCGGTCAC
CTTCCCGGGCTCGAGTTCCCAATACTAGAAAGAAGGGACCTCATTTCCTC
AAAACAGGCGTGCGTAGGACTACCCCCCCCCCCCGGTAGCGTTGTACGTA
GAGCAGCCTTTGTACCTCGCTGAGACCGTCGTCTCTCCATTTGTCAGCCG
GTGAACGCGAGCGATGTCGGTCAGAGAAATACACAATATTGTAGCCCGGG
CGATGTTGCTTTTCAGAAAAAACACCGCACATCTCTTCTCATGGGAGTCC
TTCTTTGGATGACTCTAGTGGGCGGCTTGCACCGCCACTTGGCGACAGGG
AAACGGCCTCTCTCGTCTCTTGGCCGCGGTCATGAATATGGTGGCGGTTT
CATCTACCGCACGGTGGACGTTCAGGAGGCTTTATTGAGTGCGCGTAGTG
GAGAGCTTCTGGTTCGCCCCCTTTGTTGGTCGGAACTCTGTTTTCCATCT
GTGCCTTGTGACGACGTGTTTTGGCCCGATTTTTTCCCCTCTGTCCTACA
GCCGTCCGGGGGCCTGATGTTCCATGTACCCGTCTGTTCATTCCGTGCTG
CCTGCCCCCCCCCCCCCTTTCCCCCAGATGCGGCTCCCGCCAGAAGTGAA
CAGAGCCGTCTATGTCAGGTGAGCTATGCATAGGTGTCTTTCTTCTTCCC
GTGCATGGAGTTCTTGATCTAAGCATATGTTTCTTTCTTCCCGTGCATGG
AGTTCTCGATCTAAGGTGGCGTTTTTTTCTGAGATGTGGCCTTTATCGCC
CCGGCCCGTTTATTTTGGGTTTCTCGATATATTATATGTACTCCCCAAAC
CTGAAAACCTCAAAATCCCTAAACAATTGATAAAATAAACACCCCCACTT
ATTATATATATATTAGCTGTAGGGGGGCCTGTTTAGTGCCGTTACGTGCC
CAGATAATTGACCGGCGGTGTGACGGACACAAGACACTGTTCAAAGTACC
GACTGGTGGTTCACTCACTCTTTGCCAGCCGACTAAACGGGCCCTACACC
GGCCATCGCCACTATTCAACCGGCACTCAAAAGGGCCCTCTACTTGCTGT
AGTACCGTATACCGTATGCATGCATAGCGTGCAAGGCGCGAAAGCGGGCT
CGAAGGCGAGCCTTTCGCCTCGAATTGCGGTGCAGACAAGCGACGCGTTC
TTCTGGGATGATTTGCTTGTAGGGTAGGCACGTACAGCAGACTGACTCCC
TGTTTGGTGCTTGTTGGTTTGCGAGCTCCTTCACCCCGTGTTGTGGAATT
GACACGAAATGGCTAAAAACTGAACAGGCATCAGAAGAGGCTGGATTGCT
CTTGAACATGATAGTCGTCATGGTCGTCAGTTTGTGTCCCCGTGCACGAA
ATTGTTTACATGTTCGCCCGGAAATCCGCCGGATATCACACGCACATGGG
GCACATTATTCAGCAGTACCTGTATCAACACTAAGAAATCCCGTCCCTGA
CCTTCCCATTCCTCGCCACTCGAAAATGTGCGCTGCTCTGATTTTTGGCT
CTCGTTCAGAAATCTACCCTTCAAGATTTCCGCGGACGAAATGTACGACA
TATTTGGCAAGTACGGCGCCATCCGCCAGGTACGTTCGGTCATGGAATCT
ACCACGACATGCCACACCACGTTCCACCCTGCCATATTGTATCACCCTAT
TCCGGCCCAAAAAACAAACGTAGAGGAGCGCGTGTAAACTGGTGCTGCTG
GCTTCCTTGATCCTGCCAGTCAAGGGTGGATGGTTGTCGGGCAGTAGGGT
TTACTCTCAAGGAGCCAGGCCTCCTTCCCAACGCCCCCTGAAACACCCGG
AAACCGCCCAATTGAATTGGCATTGTACAGCCGGTGCACAAACATTAGTG
CATAATTGTACTCATCATGTGGATCGAACTTAAAAATACACTCCGCGCTC
AGTTTCATGCAGTGTTTCCTCCAAGGTTCAGCAGGAAAAAACCAACCTTC
CGAACACCGCCTGAAACACCCGGAAACCGCCCTGGAGATGCCGTTGTTTT
CCTCGGTCAGACGTGGTCCCGTCGATTCGTCCTTGTTTTGGTAACGCAGT
CCCCTTCCATACTTTCAACCGTTGTTATCGCGTTCGGCGAGCGCCCTGTC
CAGCATAGCTATTTAGCGTGGGAGTGCGTTCCTTGACAGTGTTTCTGTTT
TCCGACGTGTCTTGACCGCGTTCTTCCGGGTTGGCAGATCCGACTGGGAG
ACAGGCAGGACACCAGGGGGACGGCCTTCGTGGTGTACGATGACATCTAC
GACGCGAAGGCGGCGGTGGACCACCTGAGCGGCTTCAACGTGTGTGGGCG
GTACCTCATCGTCCTCTACTACCAGGCGAGGACCATTTGCACTATTTATT
ATTTTATCTGTCCTTCGGGATTCCTTTTTTTTTGTTCCTGTTCCCTTTTG
TTGGGTGTTTTTCTTCAAAGTTTCCCTCTGGCTGAGACTCTGCTTGCTCG
TGTGTTCTCCACCCATGACCATGATCATAGTATGGTGGTGGTGGTGATGG
TGGTTCCTCTTCAATGGTGGGTTGCTTGCGGGATTGGACGGTACGTCTTG
GTGTGTCTCTCGTTTGCACCTCCTCGTCGTGGCGTACAACCGCGTACTAC
TCTGTTTGATATATTCGGGCCCTTCGGATGTAAATGTGAATGTCTCAATG
GCCCCTGTGCTAAACAGAGTTGTATCAAGATGTAACGGGGATTGGAGCCG
TTCGCACAGTCGACTACACTGCGGTAGCCACCGAGTTGAAAATCATGCGC
GTGTGGACTTCGTTGTTGCCGCCCCCCCTGAATCTCCCGTCCGCGAGTAC
GCTGCGAACCGCACCTCGTTCAACGTCTTGGCTTACCTACCGCCCACCCT
GACGAAATGAACCGTTTCCCATCAATTTTTGTGTTGGCCAGCCCGCAAAG
ATGGCGAAGCGAATGGACCAGCAGGCGAAGAAGAAGGAGCTCGAGGAACT
CAGGTAAGAAACAGATAAATACCCATGACCTGTTGGGTTGCCGTGTGCTC
ACCCGGCATGTTTTGTGTGACTTCCACGGACTTGTGGGTAGGTTGCCAAG
AAGACTACAATAGCCCCGGCTCTAGAAAATGCTTGGAAGACTCGGAATCA
CCTCTTACCGTAATGTGTGGCACAATCAAGACACCACAAGCCCTTGTAGA
GTGACATCGGTGCGTAGGTGTAACCACGAGTGTTTAAATCCCACGGGTAA
GCGTGGAAGAGTTAGACAACACACGAGAAAGAGAGAGAGAAAGAGAGAGA
GAGAGAGAGAGAGATGGCCTACCCAGTCCTAAGAGGCCATCCCAAGACGA
CAGCCGTTGCATCCCAGCGAAGTACCACTATGGATATCTGCTGGTTTGCC
TGTCTGTAGCCAACCATCAAGCAACACCGCACCAAAAGATGCCCGCTTGC
CTTGGTATGTTTTTCTGCTCGTGCTGATGCATCGTGCAACAGTATACCGA
GATACATGTGCCGCTGAGCTGTTGCGTTGATCCGGCGGCAGATGTTTGGG
CGGCGTGCAGTTTTTTAATACTACATACTCGTGGGGTAAACTTCATGGCT
CCTGCAATGTGGATGCAACCCTACGACACATTCACACGCTCCAGCTCATC
TATCGCATCACGCCTCCGTCAATTTTCTAGGCTTGTCCTCAGGCCGGCTC
GGGTTGCTGTGCCGTACGGCCGATTTTTTTGCAACACCGTGATGCTACGA
ACATGGCATCTGACCAATGTATGGCATATGAGCGACTCCACTCCTCAATG
GCTAACCCGCTGCCCCCCGCCCGTGCCCCGTTTGCCCCTCCCTTCCGCAA
CAACGAAACAGAGCAAAGTTGAAAGTGGCCAGGGAAGAGGACGCAGCAGG
AGACACGCCGGCGTCAAAATGAGCGTTGCGATTCAAGTATACTTTCATTT
TCATATGCATACAGCAAGCAGTACAATATTCTTCGGTCTCGTTTGTCTTT
TGTGTGTTGTGTTTCTTGGGGAATGAACAGCCCGGTCGGTGAAAGCCGGC
AGCGTTAAGAGTACACGGCCTGTGTACCGGTGCTGCGATGTAAATTAGTG
TTTCTGACACCACGCACAAGCACCAGCGAGCGGCGCGTAGATGTTGTCGT
GCCCAACGGAGAGAGGGAGACCTTCTTCGCACTCCTTAGGCAAAGGCAGC
TGTGAGAGCGGGCGTGATCTTAGGCCGCCGTTATTGTTATTTGCTGGTGC
TGCCAGCATGCGATGTGTCAGCCTTTATCTTGTCTGTCTGACATCCCCCC
TAGGCTGACTCCACCACTATTAGAGGTTGGGGACGTCCTGTTGCAAACGT
GTTTCGTTGCCACTGCTGTTCATTTTAAGGGCGTCGGGGGGGGGGGTGGC
GTAGAGTTTGACTACCCAGCAAGCATGGCATTTGTTTTCAGCCTGAGGCG
GATTCCGCGCTGTCGTACGTTCAGGGGGGGGGGGGGTACACGGAAACGAC
GGGGAGAGAGACGCAAGTCTGTGTGCGAGGGTAGCAGAAAACGGGGTTGA
CCACACGAACGAAGAAGCGCTAAATTGGAGAAAGTATACGTTGTCACCAT
GCCCGAAACTTTGGATGTGGGAATTACTTTTCCCACATCCCAAACCCTAC
CCGACACGTCTGTGAGTTCTTCTGTTAGCACTTCCAACACCCTACCCCAC
GCTTCTGCGAATTCTGCCACCCCTCCGCGGAATCCACAAACCGCTGCAGA
ACACCCCCACCCCGAGGCACTATTCCAATCCGAATAGGATTGGTTTCTGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:277200..282649-

>mRNA_E-siliculosus-1a_M_contig98.17706.1 ID=mRNA_E-siliculosus-1a_M_contig98.17706.1|Name=mRNA_E-siliculosus-1a_M_contig98.17706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=810bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:277200..282649- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGACGGCCAAAGGGACAAAGACAGGAGACCGATGGACGGCCAAAGGGA
CAAAGACAGGAGACCGATGCGGCTCCCGCCAGAAGTGAACAGAGCCGTCT
ATGTCAGATGCGGCTCCCGCCAGAAGTGAACAGAGCCGTCTATGTCAGAA
ATCTACCCTTCAAGATTTCCGCGGACGAAATGTACGACATATTTGGCAAG
TACGGCGCCATCCGCCAGAAATCTACCCTTCAAGATTTCCGCGGACGAAA
TGTACGACATATTTGGCAAGTACGGCGCCATCCGCCAGATCCGACTGGGA
GACAGGCAGGACACCAGGGGGACGGCCTTCGTGGTGTACGATGACATCTA
CGACGCGAAGGCGGCGGTGGACCACCTGAGCGGCTTCAACGTGTGTGGGC
GGTACCTCATCATCCGACTGGGAGACAGGCAGGACACCAGGGGGACGGCC
TTCGTGGTGTACGATGACATCTACGACGCGAAGGCGGCGGTGGACCACCT
GAGCGGCTTCAACGTGTGTGGGCGGTACCTCATCACTCTGCTTGCTCGTA
CTCTGCTTGCTCGTCCCGCAAAGATGGCGAAGCGAATGGACCAGCAGGCG
AAGAAGAAGGAGCTCGAGGAACTCAGCCCGCAAAGATGGCGAAGCGAATG
GACCAGCAGGCGAAGAAGAAGGAGCTCGAGGAACTCAGAGCAAAGTTGAA
AGTGGCCAGGGAAGAGGACGCAGCAGGAGACACGCCGGCGTCAAAATGAA
GCAAAGTTGAAAGTGGCCAGGGAAGAGGACGCAGCAGGAGACACGCCGGC
GTCAAAATGA
back to top