Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)
HSP 1 Score: 233 bits (594), Expect = 2.130e-72
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 2
Query: 161 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK 529
MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLI L +PAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK
Sbjct: 1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK 123
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)
HSP 1 Score: 176 bits (447), Expect = 1.900e-50
Identity = 88/125 (70.40%), Postives = 107/125 (85.60%), Query Frame = 2
Query: 128 MDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREED 502
MD Q+++ R RLPPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVY+DIYDAK AVDHLSGFNVCGRYLI L +P +MAK+MDQ+ +++ELEEL+AK R+ D
Sbjct: 1 MDPQQNR-RANARLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELEELKAKYLAERQND 124
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)
HSP 1 Score: 173 bits (438), Expect = 4.070e-49
Identity = 86/115 (74.78%), Postives = 98/115 (85.22%), Query Frame = 2
Query: 152 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVARE 496
RR RLPPEVNR +YVRNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVY+DIYDAKAAVDHLSGFNVCGRYLI L + K KR+D+ K++E+EE++AK V E
Sbjct: 7 RRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGE 121
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)
HSP 1 Score: 171 bits (434), Expect = 1.690e-48
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 2
Query: 164 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREE 499
RLPPEVNR +Y+RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLI L + A+M KR+D K++ELEEL+AK V+ EE
Sbjct: 12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELEELKAKFNVSGEE 123
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)
HSP 1 Score: 170 bits (431), Expect = 4.840e-48
Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 2
Query: 164 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVAREEDA 505
RLPPEVNR +YVRNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L + ++M KRMD K+KELEEL+ K V+ +E A
Sbjct: 14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELEELKQKYNVSADEVA 127
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
R1DMS8_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMS8_EMIHU)
HSP 1 Score: 169 bits (428), Expect = 1.430e-47
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 2
Query: 152 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKV 487
R MRLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L + KM KR+D + ++KEL E+RAKL +
Sbjct: 7 RASMRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQKELAEMRAKLGI 118
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)
HSP 1 Score: 168 bits (426), Expect = 2.820e-47
Identity = 83/124 (66.94%), Postives = 100/124 (80.65%), Query Frame = 2
Query: 125 AMDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKVARE 496
+MD R RLPPEVNR VYVRNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVY+DIYDAK AVDHL+GFNVCGRYL+ L + +KM +R+D Q K++ELEEL+ K + E
Sbjct: 3 SMDSGAGSRRGNARLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKMQERIDNQRKRQELEELKKKYNIQTE 126
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A7S2JD52_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JD52_9EUKA)
HSP 1 Score: 167 bits (423), Expect = 7.570e-47
Identity = 81/112 (72.32%), Postives = 96/112 (85.71%), Query Frame = 2
Query: 152 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKV 487
R+ RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+ QDTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L + KM KR+D + + KEL E+RA+ +
Sbjct: 6 RQQQRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAQDTRGTAFVVYEDIYDAKTAVDHLSGFNVCGRYLVVLYFQQTKMQKRLDTEREMKELAEMRARFGI 117
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A0M0JX52_9EUKA (Pre-mRNA branch site p14-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX52_9EUKA)
HSP 1 Score: 166 bits (421), Expect = 1.490e-46
Identity = 81/114 (71.05%), Postives = 97/114 (85.09%), Query Frame = 2
Query: 146 KDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKLKV 487
+ R+ +RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+ DTRGTAFVVY+DI+DAK AVDHLSGFNVCGRYL+ L + KM KR D + + KEL E+RAKL +
Sbjct: 4 RQRQQLRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAADTRGTAFVVYEDIFDAKTAVDHLSGFNVCGRYLVVLYYQQTKMQKRQDTEREMKELAEMRAKLGI 117
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Match:
A0A7S3SDL9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDL9_9SPIT)
HSP 1 Score: 166 bits (420), Expect = 2.160e-46
Identity = 80/112 (71.43%), Postives = 96/112 (85.71%), Query Frame = 2
Query: 146 KDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLITLLARPAKMAKRMDQQAKKKELEELRAKL 481
+ R +RLPPEVNRA+YVRNLPFKISA+EMYDIFGK+GA+RQ+RLG DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+ L + KM KR+D + +++EL E+RAKL
Sbjct: 11 RQRATLRLPPEVNRALYVRNLPFKISAEEMYDIFGKFGALRQVRLGSAPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQRELAEMRAKL 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17706.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 2.13e-72 / Id = 96.75 Expect = 1.90e-50 / Id = 70.40 Expect = 4.07e-49 / Id = 74.78 Expect = 1.69e-48 / Id = 74.11 Expect = 4.84e-48 / Id = 72.81 Expect = 1.43e-47 / Id = 74.11 Expect = 2.82e-47 / Id = 66.94 Expect = 7.57e-47 / Id = 72.32 Expect = 1.49e-46 / Id = 71.05 Expect = 2.16e-46 / Id = 71.43 Sequence D7G0W6_ECTSI A0A6S9GFW4_HETAK A0A835YN30_9STRA A0A7S2C985_9STRA A0A7S2DAY0_9STRA R1DMS8_EMIHU A0A7S2S8J7_9STRA A0A7S2JD52_9EUKA A0A0M0JX52_9EUKA A0A7S3SDL9_9SPIT Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 405 Model size 1383 Exons 8 Ec32 ortholog Ec-23_002040.1 Ec32 ortholog description RNA recognition motif domain Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko00002,ko01000,ko03041,ko04147 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. U EC 3.5.2.2 EggNOG OGs KOG0114@1,KOG0114@2759 EggNOG free text desc. RNA splicing GOs GO:0000375,GO:0000377,GO:0000398,GO:0001701,GO:0001824,GO:0001825,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048646,GO:0048856,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904 KEGG Module M00046,M00352 KEGG Pathway ko00240,ko00410,ko00770,ko00983,ko01100,ko03040,map00240,map00410,map00770,map00983,map01100,map03040 KEGG Reaction R02269,R03055,R08227 KEGG ko ko:K01464,ko:K12833 KEGG rclass RC00632,RC00680 Preferred name SF3B6 Seed eggNOG ortholog 2880.D7G0W6 Seed ortholog evalue 3.6e-59 Seed ortholog score 234.2 Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936561.6308053-UTR-E-siliculosus-1a_M_contig98:277199..277525 1622936561.6308053-UTR-E-siliculosus-1a_M_contig98:277199..277525 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 277200..277525 - 1696251131.8517702-UTR-E-siliculosus-1a_M_contig98:277199..277525 1696251131.8517702-UTR-E-siliculosus-1a_M_contig98:277199..277525 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 277200..277525 - 1622936561.6436875-UTR-E-siliculosus-1a_M_contig98:277552..278077 1622936561.6436875-UTR-E-siliculosus-1a_M_contig98:277552..278077 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 277553..278077 - 1696251131.8647246-UTR-E-siliculosus-1a_M_contig98:277552..278077 1696251131.8647246-UTR-E-siliculosus-1a_M_contig98:277552..278077 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 277553..278077 - 1622936561.7687676-UTR-E-siliculosus-1a_M_contig98:282522..282649 1622936561.7687676-UTR-E-siliculosus-1a_M_contig98:282522..282649 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 282523..282649 - 1696251131.9579785-UTR-E-siliculosus-1a_M_contig98:282522..282649 1696251131.9579785-UTR-E-siliculosus-1a_M_contig98:282522..282649 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig98 282523..282649 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936561.6577685-CDS-E-siliculosus-1a_M_contig98:278077..278138 1622936561.6577685-CDS-E-siliculosus-1a_M_contig98:278077..278138 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 278078..278138 - 1696251131.8800695-CDS-E-siliculosus-1a_M_contig98:278077..278138 1696251131.8800695-CDS-E-siliculosus-1a_M_contig98:278077..278138 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 278078..278138 - 1622936561.677443-CDS-E-siliculosus-1a_M_contig98:278996..279058 1622936561.677443-CDS-E-siliculosus-1a_M_contig98:278996..279058 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 278997..279058 - 1696251131.8889327-CDS-E-siliculosus-1a_M_contig98:278996..279058 1696251131.8889327-CDS-E-siliculosus-1a_M_contig98:278996..279058 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 278997..279058 - 1622936561.691439-CDS-E-siliculosus-1a_M_contig98:279498..279513 1622936561.691439-CDS-E-siliculosus-1a_M_contig98:279498..279513 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 279499..279513 - 1696251131.8976972-CDS-E-siliculosus-1a_M_contig98:279498..279513 1696251131.8976972-CDS-E-siliculosus-1a_M_contig98:279498..279513 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 279499..279513 - 1622936561.7081802-CDS-E-siliculosus-1a_M_contig98:279639..279762 1622936561.7081802-CDS-E-siliculosus-1a_M_contig98:279639..279762 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 279640..279762 - 1696251131.9066448-CDS-E-siliculosus-1a_M_contig98:279639..279762 1696251131.9066448-CDS-E-siliculosus-1a_M_contig98:279639..279762 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 279640..279762 - 1622936561.7230487-CDS-E-siliculosus-1a_M_contig98:280370..280440 1622936561.7230487-CDS-E-siliculosus-1a_M_contig98:280370..280440 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 280371..280440 - 1696251131.9156284-CDS-E-siliculosus-1a_M_contig98:280370..280440 1696251131.9156284-CDS-E-siliculosus-1a_M_contig98:280370..280440 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 280371..280440 - 1622936561.7365382-CDS-E-siliculosus-1a_M_contig98:281331..281372 1622936561.7365382-CDS-E-siliculosus-1a_M_contig98:281331..281372 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 281332..281372 - 1696251131.9348354-CDS-E-siliculosus-1a_M_contig98:281331..281372 1696251131.9348354-CDS-E-siliculosus-1a_M_contig98:281331..281372 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 281332..281372 - 1622936561.7506711-CDS-E-siliculosus-1a_M_contig98:282489..282522 1622936561.7506711-CDS-E-siliculosus-1a_M_contig98:282489..282522 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 282490..282522 - 1696251131.9458287-CDS-E-siliculosus-1a_M_contig98:282489..282522 1696251131.9458287-CDS-E-siliculosus-1a_M_contig98:282489..282522 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 282490..282522 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17706.1
>prot_E-siliculosus-1a_M_contig98.17706.1 ID=prot_E-siliculosus-1a_M_contig98.17706.1|Name=mRNA_E-siliculosus-1a_M_contig98.17706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=135bp
MDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIR back to top mRNA from alignment at E-siliculosus-1a_M_contig98:277200..282649-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17706.1 ID=mRNA_E-siliculosus-1a_M_contig98.17706.1|Name=mRNA_E-siliculosus-1a_M_contig98.17706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5450bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:277200..282649- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)CTCCTGCTACTTCTTCCTAGGGTCGAGTCTTGCTTATAGTTTGTAGCCCC
TGATTAGTGGGCGCCTTCCATTGTAGAACGAGAGAGAACAAGACCGCGAC
CTCTGGCTCTGGCAAAAGCAGCGAGCC ATGGACGGCCAAAGGGACAAAGA
CAGGAGACCG GTGAGGACACGATAGCACTATAGCAGGACACCCGAAGAAG
ACCAGCAAAGGATCGTCGTGGATAGCCATGTTTCGCATTTTCGTAGTCGG
GTGGATAGACGCACTCGGAAGCAAGGAGAGAAGGGTTGTGGATTGTTTCG
GTGCTACTACTTGTAGTGTTGTCCAGAGCGGCTGCTGTGTGCGGGGGAGA
GGATCTCGCCGCCATCGTGTCGGCCAACACCACACACCACATGGCATTGG
ACAGCACCACCACATTCAATGCCAAAGGTGCAGATTAAACTACAACCGAG
TGCCTCAAGGGCGGAGGAGAGACACCCTTTTGCAATCCGTTCATTCGTGT
TTTGTTTTAAATATCAAACTTGAGGGAAGCCGGGTGCACACAGCAAGCAG
CGTAGTATTTAGATTCAGAGCAGCAGTAGCCTCCATCCCTACGCCCTGAA
GCCCTCGTGTGTGCGCGCACGATCGGCACCCCTACAGCCGCAAGCACTTG
TAATATAATACAAGTCGAACCATGGGGCGTATATGAGTTCTATCGGTCAC
CTTCCCGGGCTCGAGTTCCCAATACTAGAAAGAAGGGACCTCATTTCCTC
AAAACAGGCGTGCGTAGGACTACCCCCCCCCCCCGGTAGCGTTGTACGTA
GAGCAGCCTTTGTACCTCGCTGAGACCGTCGTCTCTCCATTTGTCAGCCG
GTGAACGCGAGCGATGTCGGTCAGAGAAATACACAATATTGTAGCCCGGG
CGATGTTGCTTTTCAGAAAAAACACCGCACATCTCTTCTCATGGGAGTCC
TTCTTTGGATGACTCTAGTGGGCGGCTTGCACCGCCACTTGGCGACAGGG
AAACGGCCTCTCTCGTCTCTTGGCCGCGGTCATGAATATGGTGGCGGTTT
CATCTACCGCACGGTGGACGTTCAGGAGGCTTTATTGAGTGCGCGTAGTG
GAGAGCTTCTGGTTCGCCCCCTTTGTTGGTCGGAACTCTGTTTTCCATCT
GTGCCTTGTGACGACGTGTTTTGGCCCGATTTTTTCCCCTCTGTCCTACA
GCCGTCCGGGGGCCTGATGTTCCATGTACCCGTCTGTTCATTCCGTGCTG
CCTGCCCCCCCCCCCCCTTTCCCCCAGATGCGGCTCCCGCCAGAAGTGAA
CAGAGCCGTCTATGTCAG GTGAGCTATGCATAGGTGTCTTTCTTCTTCCC
GTGCATGGAGTTCTTGATCTAAGCATATGTTTCTTTCTTCCCGTGCATGG
AGTTCTCGATCTAAGGTGGCGTTTTTTTCTGAGATGTGGCCTTTATCGCC
CCGGCCCGTTTATTTTGGGTTTCTCGATATATTATATGTACTCCCCAAAC
CTGAAAACCTCAAAATCCCTAAACAATTGATAAAATAAACACCCCCACTT
ATTATATATATATTAGCTGTAGGGGGGCCTGTTTAGTGCCGTTACGTGCC
CAGATAATTGACCGGCGGTGTGACGGACACAAGACACTGTTCAAAGTACC
GACTGGTGGTTCACTCACTCTTTGCCAGCCGACTAAACGGGCCCTACACC
GGCCATCGCCACTATTCAACCGGCACTCAAAAGGGCCCTCTACTTGCTGT
AGTACCGTATACCGTATGCATGCATAGCGTGCAAGGCGCGAAAGCGGGCT
CGAAGGCGAGCCTTTCGCCTCGAATTGCGGTGCAGACAAGCGACGCGTTC
TTCTGGGATGATTTGCTTGTAGGGTAGGCACGTACAGCAGACTGACTCCC
TGTTTGGTGCTTGTTGGTTTGCGAGCTCCTTCACCCCGTGTTGTGGAATT
GACACGAAATGGCTAAAAACTGAACAGGCATCAGAAGAGGCTGGATTGCT
CTTGAACATGATAGTCGTCATGGTCGTCAGTTTGTGTCCCCGTGCACGAA
ATTGTTTACATGTTCGCCCGGAAATCCGCCGGATATCACACGCACATGGG
GCACATTATTCAGCAGTACCTGTATCAACACTAAGAAATCCCGTCCCTGA
CCTTCCCATTCCTCGCCACTCGAAAATGTGCGCTGCTCTGATTTTTGGCT
CTCGTTCAGAAATCTACCCTTCAAGATTTCCGCGGACGAAATGTACGACA
TATTTGGCAAGTACGGCGCCATCCGCCAG GTACGTTCGGTCATGGAATCT
ACCACGACATGCCACACCACGTTCCACCCTGCCATATTGTATCACCCTAT
TCCGGCCCAAAAAACAAACGTAGAGGAGCGCGTGTAAACTGGTGCTGCTG
GCTTCCTTGATCCTGCCAGTCAAGGGTGGATGGTTGTCGGGCAGTAGGGT
TTACTCTCAAGGAGCCAGGCCTCCTTCCCAACGCCCCCTGAAACACCCGG
AAACCGCCCAATTGAATTGGCATTGTACAGCCGGTGCACAAACATTAGTG
CATAATTGTACTCATCATGTGGATCGAACTTAAAAATACACTCCGCGCTC
AGTTTCATGCAGTGTTTCCTCCAAGGTTCAGCAGGAAAAAACCAACCTTC
CGAACACCGCCTGAAACACCCGGAAACCGCCCTGGAGATGCCGTTGTTTT
CCTCGGTCAGACGTGGTCCCGTCGATTCGTCCTTGTTTTGGTAACGCAGT
CCCCTTCCATACTTTCAACCGTTGTTATCGCGTTCGGCGAGCGCCCTGTC
CAGCATAGCTATTTAGCGTGGGAGTGCGTTCCTTGACAGTGTTTCTGTTT
TCCGACGTGTCTTGACCGCGTTCTTCCGGGTTGGCAGATCCGACTGGGAG
ACAGGCAGGACACCAGGGGGACGGCCTTCGTGGTGTACGATGACATCTAC
GACGCGAAGGCGGCGGTGGACCACCTGAGCGGCTTCAACGTGTGTGGGCG
GTACCTCATC GTCCTCTACTACCAGGCGAGGACCATTTGCACTATTTATT
ATTTTATCTGTCCTTCGGGATTCCTTTTTTTTTGTTCCTGTTCCCTTTTG
TTGGGTGTTTTTCTTCAAAGTTTCCCTCTGGCTGAGACTCTGCTTGCTCG
T GTGTTCTCCACCCATGACCATGATCATAGTATGGTGGTGGTGGTGATGG
TGGTTCCTCTTCAATGGTGGGTTGCTTGCGGGATTGGACGGTACGTCTTG
GTGTGTCTCTCGTTTGCACCTCCTCGTCGTGGCGTACAACCGCGTACTAC
TCTGTTTGATATATTCGGGCCCTTCGGATGTAAATGTGAATGTCTCAATG
GCCCCTGTGCTAAACAGAGTTGTATCAAGATGTAACGGGGATTGGAGCCG
TTCGCACAGTCGACTACACTGCGGTAGCCACCGAGTTGAAAATCATGCGC
GTGTGGACTTCGTTGTTGCCGCCCCCCCTGAATCTCCCGTCCGCGAGTAC
GCTGCGAACCGCACCTCGTTCAACGTCTTGGCTTACCTACCGCCCACCCT
GACGAAATGAACCGTTTCCCATCAATTTTTGTGTTGGCCAGCCCGCAAAG
ATGGCGAAGCGAATGGACCAGCAGGCGAAGAAGAAGGAGCTCGAGGAACT
CAG GTAAGAAACAGATAAATACCCATGACCTGTTGGGTTGCCGTGTGCTC
ACCCGGCATGTTTTGTGTGACTTCCACGGACTTGTGGGTAGGTTGCCAAG
AAGACTACAATAGCCCCGGCTCTAGAAAATGCTTGGAAGACTCGGAATCA
CCTCTTACCGTAATGTGTGGCACAATCAAGACACCACAAGCCCTTGTAGA
GTGACATCGGTGCGTAGGTGTAACCACGAGTGTTTAAATCCCACGGGTAA
GCGTGGAAGAGTTAGACAACACACGAGAAAGAGAGAGAGAAAGAGAGAGA
GAGAGAGAGAGAGATGGCCTACCCAGTCCTAAGAGGCCATCCCAAGACGA
CAGCCGTTGCATCCCAGCGAAGTACCACTATGGATATCTGCTGGTTTGCC
TGTCTGTAGCCAACCATCAAGCAACACCGCACCAAAAGATGCCCGCTTGC
CTTGGTATGTTTTTCTGCTCGTGCTGATGCATCGTGCAACAGTATACCGA
GATACATGTGCCGCTGAGCTGTTGCGTTGATCCGGCGGCAGATGTTTGGG
CGGCGTGCAGTTTTTTAATACTACATACTCGTGGGGTAAACTTCATGGCT
CCTGCAATGTGGATGCAACCCTACGACACATTCACACGCTCCAGCTCATC
TATCGCATCACGCCTCCGTCAATTTTCTAGGCTTGTCCTCAGGCCGGCTC
GGGTTGCTGTGCCGTACGGCCGATTTTTTTGCAACACCGTGATGCTACGA
ACATGGCATCTGACCAATGTATGGCATATGAGCGACTCCACTCCTCAATG
GCTAACCCGCTGCCCCCCGCCCGTGCCCCGTTTGCCCCTCCCTTCCGCAA
CAACGAAACAGAGCAAAGTTGAAAGTGGCCAGGGAAGAGGACGCAGCAGG
AGACACGCCGGCGTCAAAATGA GCGTTGCGATTCAAGTATACTTTCATTT
TCATATGCATACAGCAAGCAGTACAATATTCTTCGGTCTCGTTTGTCTTT
TGTGTGTTGTGTTTCTTGGGGAATGAACAGCCCGGTCGGTGAAAGCCGGC
AGCGTTAAGAGTACACGGCCTGTGTACCGGTGCTGCGATGTAAATTAGTG
TTTCTGACACCACGCACAAGCACCAGCGAGCGGCGCGTAGATGTTGTCGT
GCCCAACGGAGAGAGGGAGACCTTCTTCGCACTCCTTAGGCAAAGGCAGC
TGTGAGAGCGGGCGTGATCTTAGGCCGCCGTTATTGTTATTTGCTGGTGC
TGCCAGCATGCGATGTGTCAGCCTTTATCTTGTCTGTCTGACATCCCCCC
TAGGCTGACTCCACCACTATTAGAGGTTGGGGACGTCCTGTTGCAAACGT
GTTTCGTTGCCACTGCTGTTCATTTTAAGGGCGTCGGGGGGGGGGGTGGC
GTAGAGTTTGACTACCCAGCAAGCATGGCATTTGTTTTCAGCCTGAG GCG
GATTCCGCGCTGTCGTACGTTCAGGGGGGGGGGGGGTACACGGAAACGAC
GGGGAGAGAGACGCAAGTCTGTGTGCGAGGGTAGCAGAAAACGGGGTTGA
CCACACGAACGAAGAAGCGCTAAATTGGAGAAAGTATACGTTGTCACCAT
GCCCGAAACTTTGGATGTGGGAATTACTTTTCCCACATCCCAAACCCTAC
CCGACACGTCTGTGAGTTCTTCTGTTAGCACTTCCAACACCCTACCCCAC
GCTTCTGCGAATTCTGCCACCCCTCCGCGGAATCCACAAACCGCTGCAGA
ACACCCCCACCCCGAGGCACTATTCCAATCCGAATAGGATTGGTTTCTGC
back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:277200..282649-
>mRNA_E-siliculosus-1a_M_contig98.17706.1 ID=mRNA_E-siliculosus-1a_M_contig98.17706.1|Name=mRNA_E-siliculosus-1a_M_contig98.17706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=810bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:277200..282649- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top