Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17693.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE) HSP 1 Score: 192 bits (487), Expect = 2.040e-53 Identity = 162/198 (81.82%), Postives = 168/198 (84.85%), Query Frame = -2 Query: 7 RDPLSPVPPGAPVSXXXXXXXXXXXXXXXXXSYAVAAGAPPSSAAQYSVSPRLLSGTSAGSPRTVVVDVGSRDRGVLEVTAEEPAGGRGTEEEEAALEQLVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAARKDSDAESAHAESLYADSGFGVGSVPTKDLQDRVWKARAMHVGVPPRVEMSVISTGG 600
R+ LSPVPPGAPVS XXXXXXXXXXXX +SVSPRLLSGTSAGSPR VVDVGSRDRGVLEV+AEEPAGGRG EEEEAALEQL++KA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKDSDAESA AESLYADSGFGVGSVPTK+LQDRVWKARAMHVGVPPRVEMSVISTGG
Sbjct: 130 RNLLSPVPPGAPVSSAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXPHSVSPRLLSGTSAGSPRMAVVDVGSRDRGVLEVSAEEPAGGRGMEEEEAALEQLMKKAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDSDAESAKAESLYADSGFGVGSVPTKELQDRVWKARAMHVGVPPRVEMSVISTGG 327
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 438 |
| Model size | 602 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.5927327-CDS-E-siliculosus-1a_M_contig98:106754..107192 | 1622936556.5927327-CDS-E-siliculosus-1a_M_contig98:106754..107192 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 106755..107192 + |
| 1696251129.4994488-CDS-E-siliculosus-1a_M_contig98:106754..107192 | 1696251129.4994488-CDS-E-siliculosus-1a_M_contig98:106754..107192 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 106755..107192 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.6115158-UTR-E-siliculosus-1a_M_contig98:107192..107355 | 1622936556.6115158-UTR-E-siliculosus-1a_M_contig98:107192..107355 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 107193..107355 + |
| 1696251129.5144124-UTR-E-siliculosus-1a_M_contig98:107192..107355 | 1696251129.5144124-UTR-E-siliculosus-1a_M_contig98:107192..107355 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 107193..107355 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17693.1 >prot_E-siliculosus-1a_M_contig98.17693.1 ID=prot_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=146bp
SAAPRGDNRHLYPRGNPDVHRPRLPHPILKVLGWHRPDAEPGVRVQRLRV
RGLGVGVLPRGFRDRGGRPRRPVRDLLGPVGGDGRLLRLRGVRRLLRLLH
ELLEGGLFLFRPPPARRLLGGNLQHPAIPTAHVHHYRPRRPRRRP* back to topmRNA from alignment at E-siliculosus-1a_M_contig98:106755..107355+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig98.17693.1 ID=mRNA_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=601bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:106755..107355+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCCGCCGCCCCCCGTGGAGATAACCGACATCTCTACCCGCGGGGGAACCC
CGACGTGCATCGCCCGCGCCTTCCACACCCGATCCTGAAGGTCCTTGGTT
GGCACCGACCCGACGCCGAACCCGGAGTCCGCGTACAGCGACTCCGCGTG
CGCGGACTCGGCGTCGGAGTCCTTCCGCGCGGCTTCCGCGACCGCGGCGG
CCGCCCTCGCCGCCCTGTTCGCGACCTCCTTGGCCCTGTTGGCGGCGATG
GCCGCCTTCTGCGCCTCCGCGGCGTTCGCCGCCTTCTCCGCCTTCTCCAC
GAGCTGCTCGAGGGCGGCCTCTTCCTCTTCCGTCCCCCTCCCGCCCGCCG
GCTCCTCGGCGGTAACCTCCAGCACCCCGCGATCCCTACTGCCCACGTCC
ACCACTACCGTCCGCGGCGACCCCGCCGACGTCCCTGAGAGTAGTCTAGG
GCTAACCGAGTACTGGGCTGCCGATGATGGCGGAGCGCCGGCGGCGACGG
CATAAGACGCAGCGGAGGCCGCGGCCGCCGATGCCGCCGCCGCTGCTGCT
GCTGCCGAGGACACCGGGGCGCCTGGGGGGACGGGGGACAGGGGGTCACG
G back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:106755..107355+ >mRNA_E-siliculosus-1a_M_contig98.17693.1 ID=mRNA_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:106755..107355+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCCGCCGCCCCCCGTGGAGATAACCGACATCTCTACCCGCGGGGGAACCC
CGACGTGCATCGCCCGCGCCTTCCACACCCGATCCTGAAGGTCCTTGGTT
GGCACCGACCCGACGCCGAACCCGGAGTCCGCGTACAGCGACTCCGCGTG
CGCGGACTCGGCGTCGGAGTCCTTCCGCGCGGCTTCCGCGACCGCGGCGG
CCGCCCTCGCCGCCCTGTTCGCGACCTCCTTGGCCCTGTTGGCGGCGATG
GCCGCCTTCTGCGCCTCCGCGGCGTTCGCCGCCTTCTCCGCCTTCTCCAC
GAGCTGCTCGAGGGCGGCCTCTTCCTCTTCCGTCCCCCTCCCGCCCGCCG
GCTCCTCGGCGGTAACCTCCAGCACCCCGCGATCCCTACTGCCCACGTCC
ACCACTACCGTCCGCGGCGACCCCGCCGACGTCCCTGATCCGCCGCCCCC
CGTGGAGATAACCGACATCTCTACCCGCGGGGGAACCCCGACGTGCATCG
CCCGCGCCTTCCACACCCGATCCTGAAGGTCCTTGGTTGGCACCGACCCG
ACGCCGAACCCGGAGTCCGCGTACAGCGACTCCGCGTGCGCGGACTCGGC
GTCGGAGTCCTTCCGCGCGGCTTCCGCGACCGCGGCGGCCGCCCTCGCCG
CCCTGTTCGCGACCTCCTTGGCCCTGTTGGCGGCGATGGCCGCCTTCTGC
GCCTCCGCGGCGTTCGCCGCCTTCTCCGCCTTCTCCACGAGCTGCTCGAG
GGCGGCCTCTTCCTCTTCCGTCCCCCTCCCGCCCGCCGGCTCCTCGGCGG
TAACCTCCAGCACCCCGCGATCCCTACTGCCCACGTCCACCACTACCGTC
CGCGGCGACCCCGCCGACGTCCCTGA back to top
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