mRNA_E-siliculosus-1a_M_contig98.17693.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17693.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17693.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17693.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.040e-53
Identity = 162/198 (81.82%), Postives = 168/198 (84.85%), Query Frame = -2 
Query:    7 RDPLSPVPPGAPVSXXXXXXXXXXXXXXXXXSYAVAAGAPPSSAAQYSVSPRLLSGTSAGSPRTVVVDVGSRDRGVLEVTAEEPAGGRGTEEEEAALEQLVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAARKDSDAESAHAESLYADSGFGVGSVPTKDLQDRVWKARAMHVGVPPRVEMSVISTGG 600
            R+ LSPVPPGAPVS     XXXXXXXXXXXX               +SVSPRLLSGTSAGSPR  VVDVGSRDRGVLEV+AEEPAGGRG EEEEAALEQL++KA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RKDSDAESA AESLYADSGFGVGSVPTK+LQDRVWKARAMHVGVPPRVEMSVISTGG
Sbjct:  130 RNLLSPVPPGAPVSSAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXPHSVSPRLLSGTSAGSPRMAVVDVGSRDRGVLEVSAEEPAGGRGMEEEEAALEQLMKKAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDSDAESAKAESLYADSGFGVGSVPTKELQDRVWKARAMHVGVPPRVEMSVISTGG 327
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNK6_9PHAE2.040e-5381.82Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:106755..107355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size438
Model size602
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.5927327-CDS-E-siliculosus-1a_M_contig98:106754..1071921622936556.5927327-CDS-E-siliculosus-1a_M_contig98:106754..107192Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 106755..107192 +
1696251129.4994488-CDS-E-siliculosus-1a_M_contig98:106754..1071921696251129.4994488-CDS-E-siliculosus-1a_M_contig98:106754..107192Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 106755..107192 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.6115158-UTR-E-siliculosus-1a_M_contig98:107192..1073551622936556.6115158-UTR-E-siliculosus-1a_M_contig98:107192..107355Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 107193..107355 +
1696251129.5144124-UTR-E-siliculosus-1a_M_contig98:107192..1073551696251129.5144124-UTR-E-siliculosus-1a_M_contig98:107192..107355Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 107193..107355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17693.1prot_E-siliculosus-1a_M_contig98.17693.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 106755..107192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17693.1

>prot_E-siliculosus-1a_M_contig98.17693.1 ID=prot_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=146bp
SAAPRGDNRHLYPRGNPDVHRPRLPHPILKVLGWHRPDAEPGVRVQRLRV
RGLGVGVLPRGFRDRGGRPRRPVRDLLGPVGGDGRLLRLRGVRRLLRLLH
ELLEGGLFLFRPPPARRLLGGNLQHPAIPTAHVHHYRPRRPRRRP*
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mRNA from alignment at E-siliculosus-1a_M_contig98:106755..107355+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17693.1 ID=mRNA_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=601bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:106755..107355+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCCGCCGCCCCCCGTGGAGATAACCGACATCTCTACCCGCGGGGGAACCC
CGACGTGCATCGCCCGCGCCTTCCACACCCGATCCTGAAGGTCCTTGGTT
GGCACCGACCCGACGCCGAACCCGGAGTCCGCGTACAGCGACTCCGCGTG
CGCGGACTCGGCGTCGGAGTCCTTCCGCGCGGCTTCCGCGACCGCGGCGG
CCGCCCTCGCCGCCCTGTTCGCGACCTCCTTGGCCCTGTTGGCGGCGATG
GCCGCCTTCTGCGCCTCCGCGGCGTTCGCCGCCTTCTCCGCCTTCTCCAC
GAGCTGCTCGAGGGCGGCCTCTTCCTCTTCCGTCCCCCTCCCGCCCGCCG
GCTCCTCGGCGGTAACCTCCAGCACCCCGCGATCCCTACTGCCCACGTCC
ACCACTACCGTCCGCGGCGACCCCGCCGACGTCCCTGAGAGTAGTCTAGG
GCTAACCGAGTACTGGGCTGCCGATGATGGCGGAGCGCCGGCGGCGACGG
CATAAGACGCAGCGGAGGCCGCGGCCGCCGATGCCGCCGCCGCTGCTGCT
GCTGCCGAGGACACCGGGGCGCCTGGGGGGACGGGGGACAGGGGGTCACG
G
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:106755..107355+

>mRNA_E-siliculosus-1a_M_contig98.17693.1 ID=mRNA_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:106755..107355+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCCGCCGCCCCCCGTGGAGATAACCGACATCTCTACCCGCGGGGGAACCC
CGACGTGCATCGCCCGCGCCTTCCACACCCGATCCTGAAGGTCCTTGGTT
GGCACCGACCCGACGCCGAACCCGGAGTCCGCGTACAGCGACTCCGCGTG
CGCGGACTCGGCGTCGGAGTCCTTCCGCGCGGCTTCCGCGACCGCGGCGG
CCGCCCTCGCCGCCCTGTTCGCGACCTCCTTGGCCCTGTTGGCGGCGATG
GCCGCCTTCTGCGCCTCCGCGGCGTTCGCCGCCTTCTCCGCCTTCTCCAC
GAGCTGCTCGAGGGCGGCCTCTTCCTCTTCCGTCCCCCTCCCGCCCGCCG
GCTCCTCGGCGGTAACCTCCAGCACCCCGCGATCCCTACTGCCCACGTCC
ACCACTACCGTCCGCGGCGACCCCGCCGACGTCCCTGATCCGCCGCCCCC
CGTGGAGATAACCGACATCTCTACCCGCGGGGGAACCCCGACGTGCATCG
CCCGCGCCTTCCACACCCGATCCTGAAGGTCCTTGGTTGGCACCGACCCG
ACGCCGAACCCGGAGTCCGCGTACAGCGACTCCGCGTGCGCGGACTCGGC
GTCGGAGTCCTTCCGCGCGGCTTCCGCGACCGCGGCGGCCGCCCTCGCCG
CCCTGTTCGCGACCTCCTTGGCCCTGTTGGCGGCGATGGCCGCCTTCTGC
GCCTCCGCGGCGTTCGCCGCCTTCTCCGCCTTCTCCACGAGCTGCTCGAG
GGCGGCCTCTTCCTCTTCCGTCCCCCTCCCGCCCGCCGGCTCCTCGGCGG
TAACCTCCAGCACCCCGCGATCCCTACTGCCCACGTCCACCACTACCGTC
CGCGGCGACCCCGCCGACGTCCCTGA
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