mRNA_E-siliculosus-1a_M_contig98.17693.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17693.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE) HSP 1 Score: 192 bits (487), Expect = 2.040e-53 Identity = 162/198 (81.82%), Postives = 168/198 (84.85%), Query Frame = -2 Query: 7 RDPLSPVPPGAPVSXXXXXXXXXXXXXXXXXSYAVAAGAPPSSAAQYSVSPRLLSGTSAGSPRTVVVDVGSRDRGVLEVTAEEPAGGRGTEEEEAALEQLVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAARKDSDAESAHAESLYADSGFGVGSVPTKDLQDRVWKARAMHVGVPPRVEMSVISTGG 600 R+ LSPVPPGAPVS XXXXXXXXXXXX +SVSPRLLSGTSAGSPR VVDVGSRDRGVLEV+AEEPAGGRG EEEEAALEQL++KA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKDSDAESA AESLYADSGFGVGSVPTK+LQDRVWKARAMHVGVPPRVEMSVISTGG Sbjct: 130 RNLLSPVPPGAPVSSAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXPHSVSPRLLSGTSAGSPRMAVVDVGSRDRGVLEVSAEEPAGGRGMEEEEAALEQLMKKAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDSDAESAKAESLYADSGFGVGSVPTKELQDRVWKARAMHVGVPPRVEMSVISTGG 327 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17693.1 >prot_E-siliculosus-1a_M_contig98.17693.1 ID=prot_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=146bp SAAPRGDNRHLYPRGNPDVHRPRLPHPILKVLGWHRPDAEPGVRVQRLRVback to top mRNA from alignment at E-siliculosus-1a_M_contig98:106755..107355+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17693.1 ID=mRNA_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=601bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:106755..107355+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:106755..107355+ >mRNA_E-siliculosus-1a_M_contig98.17693.1 ID=mRNA_E-siliculosus-1a_M_contig98.17693.1|Name=mRNA_E-siliculosus-1a_M_contig98.17693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:106755..107355+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |