Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17656.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE) HSP 1 Score: 178 bits (451), Expect = 2.180e-47 Identity = 99/101 (98.02%), Postives = 99/101 (98.02%), Query Frame = 3 Query: 414 MSDKPGGAFSGLRPTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGAGGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRA 716
MSDKPGGAFSGLR TSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLG GGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRA
Sbjct: 1 MSDKPGGAFSGLRSTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGVGGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRA 101
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 450 |
| Model size | 743 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | U |
| EggNOG OGs | KOG3676@1,KOG3676@2759 |
| EggNOG free text desc. | calcium ion transmembrane transport |
| Seed eggNOG ortholog | 2880.D7FTQ3 |
| Seed ortholog evalue | 2.8e-44 |
| Seed ortholog score | 184.9 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936549.4559639-CDS-E-siliculosus-1a_M_contig97:306696..307120 | 1622936549.4559639-CDS-E-siliculosus-1a_M_contig97:306696..307120 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 306697..307120 - |
| 1696251126.0870094-CDS-E-siliculosus-1a_M_contig97:306696..307120 | 1696251126.0870094-CDS-E-siliculosus-1a_M_contig97:306696..307120 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 306697..307120 - |
| 1622936549.479787-CDS-E-siliculosus-1a_M_contig97:311851..311877 | 1622936549.479787-CDS-E-siliculosus-1a_M_contig97:311851..311877 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 311852..311877 - |
| 1696251126.0999858-CDS-E-siliculosus-1a_M_contig97:311851..311877 | 1696251126.0999858-CDS-E-siliculosus-1a_M_contig97:311851..311877 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 311852..311877 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936549.5013647-UTR-E-siliculosus-1a_M_contig97:311877..312170 | 1622936549.5013647-UTR-E-siliculosus-1a_M_contig97:311877..312170 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 311878..312170 - |
| 1696251126.1104302-UTR-E-siliculosus-1a_M_contig97:311877..312170 | 1696251126.1104302-UTR-E-siliculosus-1a_M_contig97:311877..312170 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 311878..312170 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17656.1 >prot_E-siliculosus-1a_M_contig97.17656.1 ID=prot_E-siliculosus-1a_M_contig97.17656.1|Name=mRNA_E-siliculosus-1a_M_contig97.17656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=150bp
MGRSRGRSGHLPAPVASVLQSPKDTPLEFFQDGNRPLSARMSDKPGGAFS
GLRPTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLG
AGGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRAGLGAGVGRK back to topmRNA from alignment at E-siliculosus-1a_M_contig97:306697..312170- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig97.17656.1 ID=mRNA_E-siliculosus-1a_M_contig97.17656.1|Name=mRNA_E-siliculosus-1a_M_contig97.17656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5474bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:306697..312170- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCCTGTCAGCGGTAGCAGCTCGGGATCGTTTGTCTCACGCACCCGGCGT
GAGTTGGAGGAGACTTCGCACATACAAGGACGGGAGACGAGGGGAGGGGT
GGTGTGGGCGACATTTGCAGAACCATCTGCCCCCGGGTGGAAAGGAAGCG
AGCCCAGAGGACCGACACACGGCAGCATTGAGTGCGCCTTCTCCAGGGGG
GAGATTTAGGGTTCTGCTCTCTTTCGGCGATCCAAGCGGGAGAGGTTCGG
AAGCACGGAGGCGGGGGGGCGCCCTTGTCGTAAGCTCGGCGACATGGGTC
GCAGTCGCGGTCGCAGCGGGTGAGAGAAAAAAAAGTGGAGTCCAACGGTG
TTATTTTGGTGCGCCAACTAACGTCGGGGTTTCGGTGGGCCCGCACCACA
ACGTGCACCAGGAATCTTTCATCTTCGTGCGTTGTTCTTGCTTGCGTTGT
GTCTTCCGTTTTTCTACTCCGACCCTTCTTAGATACATGCAGCAGCAGGT
TGACCCCCTCCGTTGACTGCTCGAAACCCTGGAGACAAGGGGATGCGGCG
AGGGTCACGACCCGCTTAGTCCTTCCTTATCCTGCGGCCTTTGAAAGTTT
GGTTGGCTGAGTTTGGTCGCGCAACAAACAAGTCACCCCTCTCAAACCGG
CACTTCTGTAGTCGTCGGCGCTTTTCCGACCGCGTGACTGCTGTACACGC
ACATTCATGTGTTGTGGGGCTTTTGAGCCAGCACCGCTACCACAGCACCA
AAATTATATTCTTCTAGAGTGCGCACCATCACACGGGATAGCGATCATCG
CGCCCCTCGCAGTGAAGGAAGGCGGGCTCTCGACCAAACGAAAAAAGTCT
TGCCACGAATGACGAGGCTCTTGTTGTCTGCGTCTGTGCAACTGCTGGGC
TTTTGGTCGTTGTGTGCGTGGCCCTGTTGAGATCCTTCCAGCTGAAGATG
AACCGAACGAATCAGATAAATAGCATGTTCTTTCTCGTCTGCCAGGAAGT
ATTTTTCTTGGAAAAGCCACTCCTTGACTTGATTGGTAAAGGGTACTTGT
TTGTGCGTGTGAAAGGGGGTAGAAAACAATTCTGGGTCGCTGTGATGGTA
TCTGCGTTTCCTCTCCCTGGATGGTGCATTGTGATCTATACATATTGTAT
CTTCGACAAGCGGTAGTAAATAACATCCATTTCTCTTGAACCATCTTTAG
CATCATTTGGGCGGAACGACATGTTGTTTGTTGGTTGTGTGCGCTACTAT
TTGCCGCACCAGCCGCCTTGCATCGCATTCCAAAGACAGCCTGGCATCGT
GCCTTACCCTGCCCGGACAAGATCGGTAAGCTTGTGTCGCACAGAGTGAA
AAACTGAACATCGAAGAAACGGAAGGCCTTTGCGTGCGCACCCAACTAAC
TCTGCACGCTCCGACAGAACCAAAATTGAAGTAACAGCAGTAGTTCCCAC
ATCCCAACATCCCAACCCCAATAGTTCTCAACAATTTGTTCTCTCTTGTC
TTGTCTGAAAATGGCGAAAGAAGGAGCCGCGCAGCAGCGCGCGCGCACAC
ACACACATGTTCTTTGGCGTTTATCTTCCCCTTGGTTGGTTGGGATGGCG
CACGGTTGGTGTCTCGGTGACCCTTCGGCCAAGCAGCGCCATGTGGCGGT
TTCGTTTTCTGCTCTTCTCCCTCTGCTATACGTGCCCGCTGACTGTTTGA
TTTGAACCCGACTCCCCGGGTTTTGGTTCTCTCTCTTTAATCGGGTGAAA
TTGTTCGTTGTTTCTGGCTCCTCTCTGCTCTTTTGTGGTGGTCTCCTCGG
TGCCTGTGATTTTCGAAAAAACCACCGCCCACGCAGCAGCAGCTGTAACA
AGAAGCTGAGTTTGCACCATACACACAAAATCTGACCAGAACAACCACAC
CAAGAAATGCAGGTGTGCGCCGCTCAGTCTGGGATTGGCATGGTACTTCT
ATTCTATTCAGAGCACCAAACAAAGTGCTACTTCGAAGTAAACATTGTAT
CAGGGGTTGGGGTCGGACAACGAAATTCGAGGTTGGGTTGGTTTTTTTGT
AGTTAACGAGGAGCAGGGAGTGAGGGGGGCGGGGGGTGCACCCAGATGCG
TCATGAATATGTGGTGGTATCTCAGGACCTCGAGAAACTGCTGCTGCTGT
CGGTCAGCATAAAGACGCGTGGCCGGCCCGTCCGCATGCACGGCGGTATC
TCCTATGGTAGATTTGTTTGTGCTCGCAAACAATGGCAAAAAGTGGCAAG
CAATGGGGCACGTTTTGGTACGGAGGCCTCGCCCTTTGTGCGGCCCGAGA
CTTGTTTTTGCTTGCGGGGGCTGCTGCTCCTCCTGAATGGTACGCGATTC
GGCTTGCGCTCACAACAATGTTGTGTTGTAGAAGGCAGAAGCAATGACAT
TCGGCAGGAGGGCCCACGCGTCACTGCTACTACTAACTATTTACGTGTAA
ACGCTTACGCGAAGTTGTCGTTGCTCTACGCTTGTCCCAGGCCGAACCCC
TTGCCCGTGAGCAGTGGCCGAACCGTTGCTCCCCGCACTAAACACAATTA
TAAAGAAGTCATTTACTGCTGTCTTGATTTCGGTTGATGAGTTGTCGGCA
AGACCAGAGTCACACGACGGTACCCGTTACGACAGCTGTAACGATAAGTG
GCTGCTCTGTCTCTTGTGCGGTTCCCCTCGGTATTGTCCACTTGCACGCA
CCCTTCGGGCCTTCTCGTCTCTCTCCCCCTCGCTCTCTCTCTCTCTTTCG
ATGCTGTTTATTCTCCTCACTCCCATACAACAGAGCCAGAGCTTCAACCA
GCACGCGAGTTCGCTCGTCCTGTTTTTCGTGTCGAACTTGAGACGGGTGG
AGGGACGGTGGGGGGGGGAGGGTTCTGTTTCTATGGAATCAGCACGGAGC
CCCCGAAGAACGAAAAAATCGAAGTTCACAAAACAAGTTGGGGCTGGAAT
TGATCTCCGAAATACCTCTCTCTTGGCTGCAGCAGACTAACGCTCTCTTA
TTTGGGACAGACCAGCAAGTGCACCCGCGACACCTTCTGTCTCACTTCCG
ATACTCCATACTGCTGCCTTTTGATTGGTCAATCGGTGTTAGTTCCCCCG
CTCCTCACAAAGCTCAAATTTCAACGCCTTCGTCTCTGCGTCTCTGCAAT
CTTCTGCATTCGCGAGTTGATGCTCGGATTTGCACTGCCCCACGTAACCT
TACTTGGGGCGTGAGAGGACCTACCACAGCGGGGCCACTGTCTTTGCCGT
TGGGGTTTTAAATGCGGTGTGGGTATCATTCCTCTCTTGCTCCGTCGTGG
TGCACATGTATAATACATAGTAGGGCCCGTTTTATTCCGCCGCACATACC
TTTGCTGTGGATTGCATGCATTTATCGAGTCACTCACGGACAATCCCGCG
ACCTTGTTCAACCGGCCGAGTGCCCACGTACAACTATGGTGTACAGCGGC
TTGCTGATATGGACGAAAGTGAGAGGAGAGCGCACCAGCAAGCCGTTAAT
ACAGCAGTTCTAGCGGCAATTCAGAAAAGTATGCGTAACGTCACAGAAAG
ACCCCCCGTGTGAGATTTTTTTTTTCGCCAAAGCGTTGTTCATACAATCA
CGGAAAAGACTATCGGTCCAACTTCGCAGGGTGCCCTTCAATACACAGTA
CGCATATATTCCCGCGCAACCGGTATCCCACGTACACCCGCCTCTTGAGA
CAAATGCTTGTACCATATATGCATATGAGTAACGTCAAGTTGACAGCTGA
AATTAGGGACCAACCGTTCATTCGACATGTATGTCCGCTTTTTTTTTTCT
CGGGGTATTTTATGTTTCGCCGCATTTTCGGGTTCACGGCCGACATCCAC
GCGGTGTCTGCGCTAGGTTTGTACGCACAGCAGTATTGTTGTGTGCGTTG
CTATGGGCCATGGCCGCAAGATATTCCTGTCCCAACAACGGCGGTGTGGT
GGTGTTGAGTAGCGCACCTACCGGGTCGTGACACACCGGCAGTGCCCGCT
GTAGGGCTACCTTAGGACGAGTACCGAAATTTTTCGGCACGGCACCTGTC
GGAGTTTGTTGGTACCGGGCGTGTGTTCTATGGATAGAGATGGATTCGTG
TTATGTCTTAGGTTAGGAAAAAAAAAAAAAAAAAAAAAAGCGAGAAGTGC
ATGCGCTTGGGCGGGCGTATGTTAGAGTAGCTCCAGACGATCGAACAAAC
GAGACCTGGTACTTGTGGGGCGAGGACTAAGTGGAACAACAGCAGTGGTG
GCACGTAGGGACGAAATTGCTCGGAAGTTTCAGCGGGGAAGACTGGACAA
GCAGGGGGAGTGGCGTTCGCAGCAGCAGCAGCAGCAGGAGTTAGTCCACA
CTTTTCGGGTGCTGCTGCTCTGCTGCTGCTCCCGTCAGGCGACAAGATTT
AGGTGTGACAGATCGCTGCGTTGTAGTCCTGTTTGGGGCGAGAAGCACGA
GGGCCCAGGAGATAGCTGTAGTTTACCCGCGGTTGGTATGCTGAACGTGG
GGGTCTACGTACAACGCGCAATGACACTCCAGAGCCGCGGGCAACACGAA
CTTATTGATTGATCGGAGTACCGGATATCCGAACGGGCATCGTGGGTTTT
CGCACCCGTAACGGGTTGTCTCACCCACCCCAGCACATGAGCAAGGAAAG
CCGTGATTTGATGGAGCGATCGCACCCCTCCGTGGCCCTAGTCGCACTTA
CGACGGTGGTATTCAATATGCGTCACTGCGGGCGGCTGCACGTGCCTTGC
CTTTGTTGTTTCTTCATGTGCGTATCATCACAGAGGGACTACCAGTTTGA
GATAGTTCTCAAGAGGGTATATTTTTTACATGAGTGAGGATACGACCACA
AGCGCGTCGCCTTTTCCCGTCCTTTATTCCCATGTTGGAGCAGTCAGTGG
GGTTGGGTATTCGCACGTTCCCCCCCCCCTATTTTTTTTAGTCGTACTAA
ACCAAAGGCCCTCCCCCCCCGCCGTCCCCGCCGCCGTCTTCTGCACGCAC
CACCCCAATTTTCGTGGACTTCCGCGAAAAAAATAAATAAACAAATAAAG
GCACCTGCCGGCACCTGTGGCATCTGTGCTGCAGTCCCCGAAGGACACCC
CGCTGGAGTTCTTCCAGGACGGGAACCGGCCGCTGTCGGCGCGCATGAGC
GACAAGCCCGGGGGCGCCTTCTCGGGACTACGCCCGACGTCCTTCTCGAT
CGCCAGGGGCCCCGCGCGCTCCCGCGTGTCCTCCATCGAGGAGGAGGACA
GGCGGGCGGGGAACCAGCCGCTCGTGTCGCAGTCGTACTCCGGCGGGTTC
GGGAGGTCGGAGAGCTCTCTCGGGGCCGGCGGCGCGATATCCTCGCGCAG
GATAGCCGGCAGCCGGTCGGCGGACCGCGACGGGATGGTCGGCGGCGGCG
GCAGCCGCGGGCGCAGCGGCAGGGGGGAGGACAACTTCCGGCGCGCCGGC
TTGGGCGCCGGCGTCGGCCGCAAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:306697..312170- >mRNA_E-siliculosus-1a_M_contig97.17656.1 ID=mRNA_E-siliculosus-1a_M_contig97.17656.1|Name=mRNA_E-siliculosus-1a_M_contig97.17656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:306697..312170- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGTCGCAGTCGCGGTCGCAGCGGATGGGTCGCAGTCGCGGTCGCAGC
GGGCACCTGCCGGCACCTGTGGCATCTGTGCTGCAGTCCCCGAAGGACAC
CCCGCTGGAGTTCTTCCAGGACGGGAACCGGCCGCTGTCGGCGCGCATGA
GCGACAAGCCCGGGGGCGCCTTCTCGGGACTACGCCCGACGTCCTTCTCG
ATCGCCAGGGGCCCCGCGCGCTCCCGCGTGTCCTCCATCGAGGAGGAGGA
CAGGCGGGCGGGGAACCAGCCGCTCGTGTCGCAGTCGTACTCCGGCGGGT
TCGGGAGGTCGGAGAGCTCTCTCGGGGCCGGCGGCGCGATATCCTCGCGC
AGGATAGCCGGCAGCCGGTCGGCGGACCGCGACGGGATGGTCGGCGGCGG
CGGCAGCCGCGGGCGCAGCGGCAGGGGGGAGGACAACTTCCGGCGCGCCG
GCTTGGGCGCCGGCGTCGGCCGCAAGGCACCTGCCGGCACCTGTGGCATC
TGTGCTGCAGTCCCCGAAGGACACCCCGCTGGAGTTCTTCCAGGACGGGA
ACCGGCCGCTGTCGGCGCGCATGAGCGACAAGCCCGGGGGCGCCTTCTCG
GGACTACGCCCGACGTCCTTCTCGATCGCCAGGGGCCCCGCGCGCTCCCG
CGTGTCCTCCATCGAGGAGGAGGACAGGCGGGCGGGGAACCAGCCGCTCG
TGTCGCAGTCGTACTCCGGCGGGTTCGGGAGGTCGGAGAGCTCTCTCGGG
GCCGGCGGCGCGATATCCTCGCGCAGGATAGCCGGCAGCCGGTCGGCGGA
CCGCGACGGGATGGTCGGCGGCGGCGGCAGCCGCGGGCGCAGCGGCAGGG
GGGAGGACAACTTCCGGCGCGCCGGCTTGGGCGCCGGCGTCGGCCGCAAG back to top
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