mRNA_E-siliculosus-1a_M_contig97.17656.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig97.17656.1
Unique NamemRNA_E-siliculosus-1a_M_contig97.17656.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17656.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.180e-47
Identity = 99/101 (98.02%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:  414 MSDKPGGAFSGLRPTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGAGGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRA 716
            MSDKPGGAFSGLR TSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLG GGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRA
Sbjct:    1 MSDKPGGAFSGLRSTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGVGGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRA 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ53_9PHAE2.180e-4798.02Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig97contigE-siliculosus-1a_M_contig97:306697..312170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size450
Model size743
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsKOG3676@1,KOG3676@2759
EggNOG free text desc.calcium ion transmembrane transport
Seed eggNOG ortholog2880.D7FTQ3
Seed ortholog evalue2.8e-44
Seed ortholog score184.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig97.17656.1prot_E-siliculosus-1a_M_contig97.17656.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig97 306697..311877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936549.4559639-CDS-E-siliculosus-1a_M_contig97:306696..3071201622936549.4559639-CDS-E-siliculosus-1a_M_contig97:306696..307120Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 306697..307120 -
1696251126.0870094-CDS-E-siliculosus-1a_M_contig97:306696..3071201696251126.0870094-CDS-E-siliculosus-1a_M_contig97:306696..307120Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 306697..307120 -
1622936549.479787-CDS-E-siliculosus-1a_M_contig97:311851..3118771622936549.479787-CDS-E-siliculosus-1a_M_contig97:311851..311877Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 311852..311877 -
1696251126.0999858-CDS-E-siliculosus-1a_M_contig97:311851..3118771696251126.0999858-CDS-E-siliculosus-1a_M_contig97:311851..311877Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 311852..311877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936549.5013647-UTR-E-siliculosus-1a_M_contig97:311877..3121701622936549.5013647-UTR-E-siliculosus-1a_M_contig97:311877..312170Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig97 311878..312170 -
1696251126.1104302-UTR-E-siliculosus-1a_M_contig97:311877..3121701696251126.1104302-UTR-E-siliculosus-1a_M_contig97:311877..312170Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig97 311878..312170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig97.17656.1

>prot_E-siliculosus-1a_M_contig97.17656.1 ID=prot_E-siliculosus-1a_M_contig97.17656.1|Name=mRNA_E-siliculosus-1a_M_contig97.17656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=150bp
MGRSRGRSGHLPAPVASVLQSPKDTPLEFFQDGNRPLSARMSDKPGGAFS
GLRPTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLG
AGGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRAGLGAGVGRK
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mRNA from alignment at E-siliculosus-1a_M_contig97:306697..312170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig97.17656.1 ID=mRNA_E-siliculosus-1a_M_contig97.17656.1|Name=mRNA_E-siliculosus-1a_M_contig97.17656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5474bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:306697..312170- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCCTGTCAGCGGTAGCAGCTCGGGATCGTTTGTCTCACGCACCCGGCGT
GAGTTGGAGGAGACTTCGCACATACAAGGACGGGAGACGAGGGGAGGGGT
GGTGTGGGCGACATTTGCAGAACCATCTGCCCCCGGGTGGAAAGGAAGCG
AGCCCAGAGGACCGACACACGGCAGCATTGAGTGCGCCTTCTCCAGGGGG
GAGATTTAGGGTTCTGCTCTCTTTCGGCGATCCAAGCGGGAGAGGTTCGG
AAGCACGGAGGCGGGGGGGCGCCCTTGTCGTAAGCTCGGCGACATGGGTC
GCAGTCGCGGTCGCAGCGGGTGAGAGAAAAAAAAGTGGAGTCCAACGGTG
TTATTTTGGTGCGCCAACTAACGTCGGGGTTTCGGTGGGCCCGCACCACA
ACGTGCACCAGGAATCTTTCATCTTCGTGCGTTGTTCTTGCTTGCGTTGT
GTCTTCCGTTTTTCTACTCCGACCCTTCTTAGATACATGCAGCAGCAGGT
TGACCCCCTCCGTTGACTGCTCGAAACCCTGGAGACAAGGGGATGCGGCG
AGGGTCACGACCCGCTTAGTCCTTCCTTATCCTGCGGCCTTTGAAAGTTT
GGTTGGCTGAGTTTGGTCGCGCAACAAACAAGTCACCCCTCTCAAACCGG
CACTTCTGTAGTCGTCGGCGCTTTTCCGACCGCGTGACTGCTGTACACGC
ACATTCATGTGTTGTGGGGCTTTTGAGCCAGCACCGCTACCACAGCACCA
AAATTATATTCTTCTAGAGTGCGCACCATCACACGGGATAGCGATCATCG
CGCCCCTCGCAGTGAAGGAAGGCGGGCTCTCGACCAAACGAAAAAAGTCT
TGCCACGAATGACGAGGCTCTTGTTGTCTGCGTCTGTGCAACTGCTGGGC
TTTTGGTCGTTGTGTGCGTGGCCCTGTTGAGATCCTTCCAGCTGAAGATG
AACCGAACGAATCAGATAAATAGCATGTTCTTTCTCGTCTGCCAGGAAGT
ATTTTTCTTGGAAAAGCCACTCCTTGACTTGATTGGTAAAGGGTACTTGT
TTGTGCGTGTGAAAGGGGGTAGAAAACAATTCTGGGTCGCTGTGATGGTA
TCTGCGTTTCCTCTCCCTGGATGGTGCATTGTGATCTATACATATTGTAT
CTTCGACAAGCGGTAGTAAATAACATCCATTTCTCTTGAACCATCTTTAG
CATCATTTGGGCGGAACGACATGTTGTTTGTTGGTTGTGTGCGCTACTAT
TTGCCGCACCAGCCGCCTTGCATCGCATTCCAAAGACAGCCTGGCATCGT
GCCTTACCCTGCCCGGACAAGATCGGTAAGCTTGTGTCGCACAGAGTGAA
AAACTGAACATCGAAGAAACGGAAGGCCTTTGCGTGCGCACCCAACTAAC
TCTGCACGCTCCGACAGAACCAAAATTGAAGTAACAGCAGTAGTTCCCAC
ATCCCAACATCCCAACCCCAATAGTTCTCAACAATTTGTTCTCTCTTGTC
TTGTCTGAAAATGGCGAAAGAAGGAGCCGCGCAGCAGCGCGCGCGCACAC
ACACACATGTTCTTTGGCGTTTATCTTCCCCTTGGTTGGTTGGGATGGCG
CACGGTTGGTGTCTCGGTGACCCTTCGGCCAAGCAGCGCCATGTGGCGGT
TTCGTTTTCTGCTCTTCTCCCTCTGCTATACGTGCCCGCTGACTGTTTGA
TTTGAACCCGACTCCCCGGGTTTTGGTTCTCTCTCTTTAATCGGGTGAAA
TTGTTCGTTGTTTCTGGCTCCTCTCTGCTCTTTTGTGGTGGTCTCCTCGG
TGCCTGTGATTTTCGAAAAAACCACCGCCCACGCAGCAGCAGCTGTAACA
AGAAGCTGAGTTTGCACCATACACACAAAATCTGACCAGAACAACCACAC
CAAGAAATGCAGGTGTGCGCCGCTCAGTCTGGGATTGGCATGGTACTTCT
ATTCTATTCAGAGCACCAAACAAAGTGCTACTTCGAAGTAAACATTGTAT
CAGGGGTTGGGGTCGGACAACGAAATTCGAGGTTGGGTTGGTTTTTTTGT
AGTTAACGAGGAGCAGGGAGTGAGGGGGGCGGGGGGTGCACCCAGATGCG
TCATGAATATGTGGTGGTATCTCAGGACCTCGAGAAACTGCTGCTGCTGT
CGGTCAGCATAAAGACGCGTGGCCGGCCCGTCCGCATGCACGGCGGTATC
TCCTATGGTAGATTTGTTTGTGCTCGCAAACAATGGCAAAAAGTGGCAAG
CAATGGGGCACGTTTTGGTACGGAGGCCTCGCCCTTTGTGCGGCCCGAGA
CTTGTTTTTGCTTGCGGGGGCTGCTGCTCCTCCTGAATGGTACGCGATTC
GGCTTGCGCTCACAACAATGTTGTGTTGTAGAAGGCAGAAGCAATGACAT
TCGGCAGGAGGGCCCACGCGTCACTGCTACTACTAACTATTTACGTGTAA
ACGCTTACGCGAAGTTGTCGTTGCTCTACGCTTGTCCCAGGCCGAACCCC
TTGCCCGTGAGCAGTGGCCGAACCGTTGCTCCCCGCACTAAACACAATTA
TAAAGAAGTCATTTACTGCTGTCTTGATTTCGGTTGATGAGTTGTCGGCA
AGACCAGAGTCACACGACGGTACCCGTTACGACAGCTGTAACGATAAGTG
GCTGCTCTGTCTCTTGTGCGGTTCCCCTCGGTATTGTCCACTTGCACGCA
CCCTTCGGGCCTTCTCGTCTCTCTCCCCCTCGCTCTCTCTCTCTCTTTCG
ATGCTGTTTATTCTCCTCACTCCCATACAACAGAGCCAGAGCTTCAACCA
GCACGCGAGTTCGCTCGTCCTGTTTTTCGTGTCGAACTTGAGACGGGTGG
AGGGACGGTGGGGGGGGGAGGGTTCTGTTTCTATGGAATCAGCACGGAGC
CCCCGAAGAACGAAAAAATCGAAGTTCACAAAACAAGTTGGGGCTGGAAT
TGATCTCCGAAATACCTCTCTCTTGGCTGCAGCAGACTAACGCTCTCTTA
TTTGGGACAGACCAGCAAGTGCACCCGCGACACCTTCTGTCTCACTTCCG
ATACTCCATACTGCTGCCTTTTGATTGGTCAATCGGTGTTAGTTCCCCCG
CTCCTCACAAAGCTCAAATTTCAACGCCTTCGTCTCTGCGTCTCTGCAAT
CTTCTGCATTCGCGAGTTGATGCTCGGATTTGCACTGCCCCACGTAACCT
TACTTGGGGCGTGAGAGGACCTACCACAGCGGGGCCACTGTCTTTGCCGT
TGGGGTTTTAAATGCGGTGTGGGTATCATTCCTCTCTTGCTCCGTCGTGG
TGCACATGTATAATACATAGTAGGGCCCGTTTTATTCCGCCGCACATACC
TTTGCTGTGGATTGCATGCATTTATCGAGTCACTCACGGACAATCCCGCG
ACCTTGTTCAACCGGCCGAGTGCCCACGTACAACTATGGTGTACAGCGGC
TTGCTGATATGGACGAAAGTGAGAGGAGAGCGCACCAGCAAGCCGTTAAT
ACAGCAGTTCTAGCGGCAATTCAGAAAAGTATGCGTAACGTCACAGAAAG
ACCCCCCGTGTGAGATTTTTTTTTTCGCCAAAGCGTTGTTCATACAATCA
CGGAAAAGACTATCGGTCCAACTTCGCAGGGTGCCCTTCAATACACAGTA
CGCATATATTCCCGCGCAACCGGTATCCCACGTACACCCGCCTCTTGAGA
CAAATGCTTGTACCATATATGCATATGAGTAACGTCAAGTTGACAGCTGA
AATTAGGGACCAACCGTTCATTCGACATGTATGTCCGCTTTTTTTTTTCT
CGGGGTATTTTATGTTTCGCCGCATTTTCGGGTTCACGGCCGACATCCAC
GCGGTGTCTGCGCTAGGTTTGTACGCACAGCAGTATTGTTGTGTGCGTTG
CTATGGGCCATGGCCGCAAGATATTCCTGTCCCAACAACGGCGGTGTGGT
GGTGTTGAGTAGCGCACCTACCGGGTCGTGACACACCGGCAGTGCCCGCT
GTAGGGCTACCTTAGGACGAGTACCGAAATTTTTCGGCACGGCACCTGTC
GGAGTTTGTTGGTACCGGGCGTGTGTTCTATGGATAGAGATGGATTCGTG
TTATGTCTTAGGTTAGGAAAAAAAAAAAAAAAAAAAAAAGCGAGAAGTGC
ATGCGCTTGGGCGGGCGTATGTTAGAGTAGCTCCAGACGATCGAACAAAC
GAGACCTGGTACTTGTGGGGCGAGGACTAAGTGGAACAACAGCAGTGGTG
GCACGTAGGGACGAAATTGCTCGGAAGTTTCAGCGGGGAAGACTGGACAA
GCAGGGGGAGTGGCGTTCGCAGCAGCAGCAGCAGCAGGAGTTAGTCCACA
CTTTTCGGGTGCTGCTGCTCTGCTGCTGCTCCCGTCAGGCGACAAGATTT
AGGTGTGACAGATCGCTGCGTTGTAGTCCTGTTTGGGGCGAGAAGCACGA
GGGCCCAGGAGATAGCTGTAGTTTACCCGCGGTTGGTATGCTGAACGTGG
GGGTCTACGTACAACGCGCAATGACACTCCAGAGCCGCGGGCAACACGAA
CTTATTGATTGATCGGAGTACCGGATATCCGAACGGGCATCGTGGGTTTT
CGCACCCGTAACGGGTTGTCTCACCCACCCCAGCACATGAGCAAGGAAAG
CCGTGATTTGATGGAGCGATCGCACCCCTCCGTGGCCCTAGTCGCACTTA
CGACGGTGGTATTCAATATGCGTCACTGCGGGCGGCTGCACGTGCCTTGC
CTTTGTTGTTTCTTCATGTGCGTATCATCACAGAGGGACTACCAGTTTGA
GATAGTTCTCAAGAGGGTATATTTTTTACATGAGTGAGGATACGACCACA
AGCGCGTCGCCTTTTCCCGTCCTTTATTCCCATGTTGGAGCAGTCAGTGG
GGTTGGGTATTCGCACGTTCCCCCCCCCCTATTTTTTTTAGTCGTACTAA
ACCAAAGGCCCTCCCCCCCCGCCGTCCCCGCCGCCGTCTTCTGCACGCAC
CACCCCAATTTTCGTGGACTTCCGCGAAAAAAATAAATAAACAAATAAAG
GCACCTGCCGGCACCTGTGGCATCTGTGCTGCAGTCCCCGAAGGACACCC
CGCTGGAGTTCTTCCAGGACGGGAACCGGCCGCTGTCGGCGCGCATGAGC
GACAAGCCCGGGGGCGCCTTCTCGGGACTACGCCCGACGTCCTTCTCGAT
CGCCAGGGGCCCCGCGCGCTCCCGCGTGTCCTCCATCGAGGAGGAGGACA
GGCGGGCGGGGAACCAGCCGCTCGTGTCGCAGTCGTACTCCGGCGGGTTC
GGGAGGTCGGAGAGCTCTCTCGGGGCCGGCGGCGCGATATCCTCGCGCAG
GATAGCCGGCAGCCGGTCGGCGGACCGCGACGGGATGGTCGGCGGCGGCG
GCAGCCGCGGGCGCAGCGGCAGGGGGGAGGACAACTTCCGGCGCGCCGGC
TTGGGCGCCGGCGTCGGCCGCAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:306697..312170-

>mRNA_E-siliculosus-1a_M_contig97.17656.1 ID=mRNA_E-siliculosus-1a_M_contig97.17656.1|Name=mRNA_E-siliculosus-1a_M_contig97.17656.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:306697..312170- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGTCGCAGTCGCGGTCGCAGCGGATGGGTCGCAGTCGCGGTCGCAGC
GGGCACCTGCCGGCACCTGTGGCATCTGTGCTGCAGTCCCCGAAGGACAC
CCCGCTGGAGTTCTTCCAGGACGGGAACCGGCCGCTGTCGGCGCGCATGA
GCGACAAGCCCGGGGGCGCCTTCTCGGGACTACGCCCGACGTCCTTCTCG
ATCGCCAGGGGCCCCGCGCGCTCCCGCGTGTCCTCCATCGAGGAGGAGGA
CAGGCGGGCGGGGAACCAGCCGCTCGTGTCGCAGTCGTACTCCGGCGGGT
TCGGGAGGTCGGAGAGCTCTCTCGGGGCCGGCGGCGCGATATCCTCGCGC
AGGATAGCCGGCAGCCGGTCGGCGGACCGCGACGGGATGGTCGGCGGCGG
CGGCAGCCGCGGGCGCAGCGGCAGGGGGGAGGACAACTTCCGGCGCGCCG
GCTTGGGCGCCGGCGTCGGCCGCAAGGCACCTGCCGGCACCTGTGGCATC
TGTGCTGCAGTCCCCGAAGGACACCCCGCTGGAGTTCTTCCAGGACGGGA
ACCGGCCGCTGTCGGCGCGCATGAGCGACAAGCCCGGGGGCGCCTTCTCG
GGACTACGCCCGACGTCCTTCTCGATCGCCAGGGGCCCCGCGCGCTCCCG
CGTGTCCTCCATCGAGGAGGAGGACAGGCGGGCGGGGAACCAGCCGCTCG
TGTCGCAGTCGTACTCCGGCGGGTTCGGGAGGTCGGAGAGCTCTCTCGGG
GCCGGCGGCGCGATATCCTCGCGCAGGATAGCCGGCAGCCGGTCGGCGGA
CCGCGACGGGATGGTCGGCGGCGGCGGCAGCCGCGGGCGCAGCGGCAGGG
GGGAGGACAACTTCCGGCGCGCCGGCTTGGGCGCCGGCGTCGGCCGCAAG
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