Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17646.1 vs. uniprot
Match: D7FTP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP5_ECTSI) HSP 1 Score: 103 bits (257), Expect = 2.040e-26 Identity = 56/93 (60.22%), Postives = 60/93 (64.52%), Query Frame = 3 Query: 57 APSAGMDNHRTFVGRFYRWCEDCKEASARESDFYEYNSGFQP*TVADQR*RCRPTTPP----RAFVVRCASLVTRAGNRGPGDHIPRRGQVVR 323
A SAGMD+HRTFVGRFYRWCEDCKEASARESDFYEY SG R P PP + + + GN GPGDHIPRRGQVVR
Sbjct: 33 ATSAGMDSHRTFVGRFYRWCEDCKEASARESDFYEY-SGIPTLNGG----RPTPALPPHYTAKGLCRQMCLPCDKGGNGGPGDHIPRRGQVVR 120
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 216 |
| Model size | 326 |
| Exons | 1 |
| Ec32 ortholog | Ec-06_009380.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | mitochondrion |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936547.0200648-CDS-E-siliculosus-1a_M_contig97:198930..199146 | 1622936547.0200648-CDS-E-siliculosus-1a_M_contig97:198930..199146 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 198931..199146 - |
| 1696251124.7397218-CDS-E-siliculosus-1a_M_contig97:198930..199146 | 1696251124.7397218-CDS-E-siliculosus-1a_M_contig97:198930..199146 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 198931..199146 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936547.045335-UTR-E-siliculosus-1a_M_contig97:199146..199255 | 1622936547.045335-UTR-E-siliculosus-1a_M_contig97:199146..199255 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 199147..199255 - |
| 1696251124.7498066-UTR-E-siliculosus-1a_M_contig97:199146..199255 | 1696251124.7498066-UTR-E-siliculosus-1a_M_contig97:199146..199255 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 199147..199255 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17646.1 >prot_E-siliculosus-1a_M_contig97.17646.1 ID=prot_E-siliculosus-1a_M_contig97.17646.1|Name=mRNA_E-siliculosus-1a_M_contig97.17646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=72bp
MVRRLQGGERPRIRLLRVQQRIPTLNGGRPTLALPPHYTAQGLCRQMCLP
CDKGGESRPWRPHTPPGTGCPA back to topmRNA from alignment at E-siliculosus-1a_M_contig97:198931..199255- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig97.17646.1 ID=mRNA_E-siliculosus-1a_M_contig97.17646.1|Name=mRNA_E-siliculosus-1a_M_contig97.17646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=325bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:198931..199255- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGGGCCCTCGGAAGTGGGTGCGGGCCGGGACCCGACGGCAACGTCACA
GGCTGTGCGCCGTCCGCGGGCATGGACAACCACCGTACGTTCGTGGGTAG
GTTCTATCGATGGTGCGAAGATTGCAAGGAGGCGAGCGCCCGCGAATCAG
ACTTCTACGAGTACAACAGCGGATTCCAACCCTGAACGGTGGCCGACCAA
CGCTAGCGCTGCCGCCCCACTACACCGCCCAGGGCCTTTGTCGTCAGATG
TGCCTCCCTTGTGACAAGGGCGGGGAATCGCGGCCCTGGCGACCACATAC
CCCGCCGGGGACAGGTTGTCCGGCA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:198931..199255- >mRNA_E-siliculosus-1a_M_contig97.17646.1 ID=mRNA_E-siliculosus-1a_M_contig97.17646.1|Name=mRNA_E-siliculosus-1a_M_contig97.17646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:198931..199255- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGCGAAGATTGCAAGGAGGCGAGCGCCCGCGAATCAGACTTCTACG
AGTACAACAGCGGATTCCAACCCTGAACGGTGGCCGACCAACGCTAGCGC
TGCCGCCCCACTACACCGCCCAGGGCCTTTGTCGTCAGATGTGCCTCCCT
TGTGACAAGGGCGGGGAATCGCGGCCCTGGCGACCACATACCCCGCCGGG
GACAGGTTGTCCGGCAATGGTGCGAAGATTGCAAGGAGGCGAGCGCCCGC
GAATCAGACTTCTACGAGTACAACAGCGGATTCCAACCCTGAACGGTGGC
CGACCAACGCTAGCGCTGCCGCCCCACTACACCGCCCAGGGCCTTTGTCG
TCAGATGTGCCTCCCTTGTGACAAGGGCGGGGAATCGCGGCCCTGGCGAC
CACATACCCCGCCGGGGACAGGTTGTCCGGCA back to top
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