mRNA_E-siliculosus-1a_M_contig97.17646.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig97.17646.1
Unique NamemRNA_E-siliculosus-1a_M_contig97.17646.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17646.1 vs. uniprot
Match: D7FTP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP5_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.040e-26
Identity = 56/93 (60.22%), Postives = 60/93 (64.52%), Query Frame = 3 
Query:   57 APSAGMDNHRTFVGRFYRWCEDCKEASARESDFYEYNSGFQP*TVADQR*RCRPTTPP----RAFVVRCASLVTRAGNRGPGDHIPRRGQVVR 323
            A SAGMD+HRTFVGRFYRWCEDCKEASARESDFYEY SG           R  P  PP    +    +      + GN GPGDHIPRRGQVVR
Sbjct:   33 ATSAGMDSHRTFVGRFYRWCEDCKEASARESDFYEY-SGIPTLNGG----RPTPALPPHYTAKGLCRQMCLPCDKGGNGGPGDHIPRRGQVVR 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTP5_ECTSI2.040e-2660.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig97contigE-siliculosus-1a_M_contig97:198931..199255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size216
Model size326
Exons1
Ec32 orthologEc-06_009380.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936547.0200648-CDS-E-siliculosus-1a_M_contig97:198930..1991461622936547.0200648-CDS-E-siliculosus-1a_M_contig97:198930..199146Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 198931..199146 -
1696251124.7397218-CDS-E-siliculosus-1a_M_contig97:198930..1991461696251124.7397218-CDS-E-siliculosus-1a_M_contig97:198930..199146Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 198931..199146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936547.045335-UTR-E-siliculosus-1a_M_contig97:199146..1992551622936547.045335-UTR-E-siliculosus-1a_M_contig97:199146..199255Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig97 199147..199255 -
1696251124.7498066-UTR-E-siliculosus-1a_M_contig97:199146..1992551696251124.7498066-UTR-E-siliculosus-1a_M_contig97:199146..199255Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig97 199147..199255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig97.17646.1prot_E-siliculosus-1a_M_contig97.17646.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig97 198931..199146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig97.17646.1

>prot_E-siliculosus-1a_M_contig97.17646.1 ID=prot_E-siliculosus-1a_M_contig97.17646.1|Name=mRNA_E-siliculosus-1a_M_contig97.17646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=72bp
MVRRLQGGERPRIRLLRVQQRIPTLNGGRPTLALPPHYTAQGLCRQMCLP
CDKGGESRPWRPHTPPGTGCPA
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mRNA from alignment at E-siliculosus-1a_M_contig97:198931..199255-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig97.17646.1 ID=mRNA_E-siliculosus-1a_M_contig97.17646.1|Name=mRNA_E-siliculosus-1a_M_contig97.17646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=325bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:198931..199255- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGGGCCCTCGGAAGTGGGTGCGGGCCGGGACCCGACGGCAACGTCACA
GGCTGTGCGCCGTCCGCGGGCATGGACAACCACCGTACGTTCGTGGGTAG
GTTCTATCGATGGTGCGAAGATTGCAAGGAGGCGAGCGCCCGCGAATCAG
ACTTCTACGAGTACAACAGCGGATTCCAACCCTGAACGGTGGCCGACCAA
CGCTAGCGCTGCCGCCCCACTACACCGCCCAGGGCCTTTGTCGTCAGATG
TGCCTCCCTTGTGACAAGGGCGGGGAATCGCGGCCCTGGCGACCACATAC
CCCGCCGGGGACAGGTTGTCCGGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:198931..199255-

>mRNA_E-siliculosus-1a_M_contig97.17646.1 ID=mRNA_E-siliculosus-1a_M_contig97.17646.1|Name=mRNA_E-siliculosus-1a_M_contig97.17646.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:198931..199255- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGCGAAGATTGCAAGGAGGCGAGCGCCCGCGAATCAGACTTCTACG
AGTACAACAGCGGATTCCAACCCTGAACGGTGGCCGACCAACGCTAGCGC
TGCCGCCCCACTACACCGCCCAGGGCCTTTGTCGTCAGATGTGCCTCCCT
TGTGACAAGGGCGGGGAATCGCGGCCCTGGCGACCACATACCCCGCCGGG
GACAGGTTGTCCGGCAATGGTGCGAAGATTGCAAGGAGGCGAGCGCCCGC
GAATCAGACTTCTACGAGTACAACAGCGGATTCCAACCCTGAACGGTGGC
CGACCAACGCTAGCGCTGCCGCCCCACTACACCGCCCAGGGCCTTTGTCG
TCAGATGTGCCTCCCTTGTGACAAGGGCGGGGAATCGCGGCCCTGGCGAC
CACATACCCCGCCGGGGACAGGTTGTCCGGCA
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