mRNA_E-siliculosus-1a_M_contig97.17634.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig97.17634.1
Unique NamemRNA_E-siliculosus-1a_M_contig97.17634.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: D7FU01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU01_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 1.160e-65
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIMVECSELASFHAGIKRTSISAPGAH-VRWVRVDICRRFRERSNPEE 297
            MSDEEPWEPLTM DYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIMVECSE+A FHAGI+RTSISAPGA  VRWVRVDICRRFRERSNPEE
Sbjct:    1 MSDEEPWEPLTMADYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIMVECSEVAGFHAGIQRTSISAPGARDVRWVRVDICRRFRERSNPEE 100
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.980e-28
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIM 165
            MSDEEPWEPLT VDY+MLG+VG FQAFALGVCIHL RWRKWPPYVTKNVDIVIIM
Sbjct:    1 MSDEEPWEPLTFVDYVMLGMVGAFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIM 55
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: D7FU03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU03_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.040e-27
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIM 165
            MSDEE WEPLTMVDY MLG VGT QAFALGVC+HL  WR WPPYVTKNVDIVI+M
Sbjct:    1 MSDEEVWEPLTMVDYTMLGFVGTVQAFALGVCVHLLIWRNWPPYVTKNVDIVIVM 55
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.470e-27
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIM 165
            MSDEE WEPLTMVDYLMLGIVGTFQA ALGVC+HLF WR WPPYVTKNVDIVIIM
Sbjct:    1 MSDEELWEPLTMVDYLMLGIVGTFQALALGVCVHLFLWRNWPPYVTKNVDIVIIM 55
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 6.750e-27
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIMVECSELASFHAGI 204
            M D+EPWEPL  VDYLMLGIV TFQAFALGVCIHL RWRKWPPYVTKNVDIVIIM       +F A +
Sbjct:    1 MPDKEPWEPLAFVDYLMLGIVCTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTFAGFAWTFAAAV 68
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.340e-25
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIM 165
            MSDEE WEPLTMVDY+MLG VGT QAFALGVC+HL  WR WPPYVTKNVDIVI+M
Sbjct:    1 MSDEEVWEPLTMVDYIMLGFVGTVQAFALGVCVHLLSWRHWPPYVTKNVDIVIVM 55
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: A0A6H5K025_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K025_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.180e-24
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIMV 168
            MSD+E WEPL MVDY+MLG VGT Q FALGVCIHL  WR WPPYVTKNVDIVI+MV
Sbjct:    1 MSDKEVWEPLAMVDYIMLGFVGTVQTFALGVCIHLLSWRHWPPYVTKNVDIVIVMV 56
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: D7FIS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS2_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.980e-23
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVII 162
            MSD +PWEPL M+D+ +LG+V TFQ  ALGVC HL +WRKWPPY+TKNVD+VII
Sbjct:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVII 54
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: D7FIR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.010e-18
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 SDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVIIMVECSELASFHAGIKRTSISAPGAHVRWVRVDI 261
            ++ E WEPL+  D+ +LG V TFQA AL VC HL RWRKWPPYVTKNVD+VII       ++F   +   S+     ++R    DI
Sbjct:    3 AEGEVWEPLSTPDFWVLGFVATFQAVALLVCAHLLRWRKWPPYVTKNVDVVII-------STFSGVLWNVSMIISSGYIRREAGDI 81
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.750e-18
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVII 162
            M+++E WEPL+  D+ +LG V TFQ  AL VC HL RWRKWPPYVTKNVD+VII
Sbjct:    1 MAEDEVWEPLSTPDFWVLGFVATFQTVALLVCAHLLRWRKWPPYVTKNVDVVII 54
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FU01_ECTSI1.160e-6594.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ7_ECTSI1.980e-2890.91Similar to regulator of G-protein signaling 16 n=1... [more]
D7FU03_ECTSI1.040e-2783.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ9_ECTSI1.470e-2790.91RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ5_ECTSI6.750e-2775.00Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5JJQ0_9PHAE1.340e-2583.64RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
A0A6H5K025_9PHAE1.180e-2480.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS2_ECTSI1.980e-2370.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIR8_ECTSI3.010e-1847.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAT5_9PHAE7.750e-1866.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig97contigE-siliculosus-1a_M_contig97:40166..40932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size300
Model size300
Exons3
Ec32 orthologEc-11_003440.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CNEE@1,2QVMV@2759
EggNOG free text desc.Regulator of G protein signaling domain
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
KEGG koko:K16449
Preferred nameRGS1
Seed eggNOG ortholog2880.D7FTZ7
Seed ortholog evalue3.7e-24
Seed ortholog score117.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig97.17634.1prot_E-siliculosus-1a_M_contig97.17634.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig97 40166..40932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936542.7904708-CDS-E-siliculosus-1a_M_contig97:40165..403301622936542.7904708-CDS-E-siliculosus-1a_M_contig97:40165..40330Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 40166..40330 +
1696251123.277173-CDS-E-siliculosus-1a_M_contig97:40165..403301696251123.277173-CDS-E-siliculosus-1a_M_contig97:40165..40330Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 40166..40330 +
1622936542.8151739-CDS-E-siliculosus-1a_M_contig97:40470..405401622936542.8151739-CDS-E-siliculosus-1a_M_contig97:40470..40540Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 40471..40540 +
1696251123.291469-CDS-E-siliculosus-1a_M_contig97:40470..405401696251123.291469-CDS-E-siliculosus-1a_M_contig97:40470..40540Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 40471..40540 +
1622936542.8374472-CDS-E-siliculosus-1a_M_contig97:40867..409321622936542.8374472-CDS-E-siliculosus-1a_M_contig97:40867..40932Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 40868..40932 +
1696251123.3009872-CDS-E-siliculosus-1a_M_contig97:40867..409321696251123.3009872-CDS-E-siliculosus-1a_M_contig97:40867..40932Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 40868..40932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig97.17634.1

>prot_E-siliculosus-1a_M_contig97.17634.1 ID=prot_E-siliculosus-1a_M_contig97.17634.1|Name=mRNA_E-siliculosus-1a_M_contig97.17634.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=100bp
MSDEEPWEPLTMVDYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVD
IVIIMVECSELASFHAGIKRTSISAPGAHVRWVRVDICRRFRERSNPEE*
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mRNA from alignment at E-siliculosus-1a_M_contig97:40166..40932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig97.17634.1 ID=mRNA_E-siliculosus-1a_M_contig97.17634.1|Name=mRNA_E-siliculosus-1a_M_contig97.17634.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=767bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:40166..40932+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGGATGAAGAGCCGTGGGAGCCTTTGACCATGGTGGATTACCTCAT
GCTTGGAATTGTGGGTACCTTCCAAGCGTTTGCCCTGGGCGTGTGCATCC
ATCTATTTCGTTGGCGGAAGTGGCCACCATACGTCACCAAGAACGTCGAC
ATCGTCATCATCATGGTGAGTGGGGTATGTAATTAATGAGGGGGGTGTTG
CTGTTGGTGCTGTTGTTTCTGCTGCCGCCGCTCAGCAACTTTCAGTAAGC
GTGCCGTGCGTGCCTCTCGGATCTGCTGGGTTGAAGTCGCCGCTCATCCT
GCAAGGTTGAGTGCTCCGAGTTGGCCAGCTTCCACGCAGGGATAAAGCGA
ACGTCGATATCCGCACCTGGTGCTCGTGATGAGGGCAAGTTGCTGTTGCA
AGGGTGTGCTCTTGCGCTTGTTTGCCCGTCTCGCCAGGACCTTTCCCTGC
GAGCTGCCCGTATTCAAGAGCAACTACCAGTGGCAAACCATCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATCTCTC
TACCTCATTCTCTGCTTGCATCCCTCTCCCGTTGACTTCTCGGACTCTTT
ACGCTTTTCCCTCTGCCTCTTCGACCAACCCCCCGGCTCTCCCCCTCTCT
TGCGCTTTTCGTGCTTCTCCCGTCCTCGATCCCGCTGGCTGCATACCTCC
AGACGTTCGCTGGGTTCGCGTGGACATTTGCAGGCGCTTTAGAGAACGGT
CTAATCCGGAGGAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:40166..40932+

>mRNA_E-siliculosus-1a_M_contig97.17634.1 ID=mRNA_E-siliculosus-1a_M_contig97.17634.1|Name=mRNA_E-siliculosus-1a_M_contig97.17634.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=600bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:40166..40932+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGGATGAAGAGCCGTGGGAGCCTTTGACCATGGTGGATTACCTCAT
GCTTGGAATTGTGGGTACCTTCCAAGCGTTTGCCCTGGGCGTGTGCATCC
ATCTATTTCGTTGGCGGAAGTGGCCACCATACGTCACCAAGAACGTCGAC
ATCGTCATCATCATGATGTCGGATGAAGAGCCGTGGGAGCCTTTGACCAT
GGTGGATTACCTCATGCTTGGAATTGTGGGTACCTTCCAAGCGTTTGCCC
TGGGCGTGTGCATCCATCTATTTCGTTGGCGGAAGTGGCCACCATACGTC
ACCAAGAACGTCGACATCGTCATCATCATGGTTGAGTGCTCCGAGTTGGC
CAGCTTCCACGCAGGGATAAAGCGAACGTCGATATCCGCACCTGGTGCTC
GTTGAGTGCTCCGAGTTGGCCAGCTTCCACGCAGGGATAAAGCGAACGTC
GATATCCGCACCTGGTGCTCACGTTCGCTGGGTTCGCGTGGACATTTGCA
GGCGCTTTAGAGAACGGTCTAATCCGGAGGAGTGAACGTTCGCTGGGTTC
GCGTGGACATTTGCAGGCGCTTTAGAGAACGGTCTAATCCGGAGGAGTGA
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