mRNA_E-siliculosus-1a_M_contig97.17643.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig97.17643.1
Unique NamemRNA_E-siliculosus-1a_M_contig97.17643.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5KWC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC1_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.290e-61
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = -2 
Query:    2 ITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMDGSALNIRLGREIAGNVLGLSAWYGVWWEWEGAGCLYIAFGN 313
            +TGPRRIASGLLTIAKSH GNPKIMR LSP ACGDDN IVEDTPAADVHVDDAELGAFLD+MDGS L+IR+GREIAGNVLGLSAW GVWWEWEGAGCLYIAFGN
Sbjct:    1 MTGPRRIASGLLTIAKSHYGNPKIMRVLSPYACGDDNLIVEDTPAADVHVDDAELGAFLDEMDGSTLSIRMGREIAGNVLGLSAWCGVWWEWEGAGCLYIAFGN 104
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5K844_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K844_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 7.490e-50
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = -2 
Query:   44 MLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMDGSALNIRLGREIAGNVLGLSAWYGVWW 325
            MLQF+TGP RIASGL TIAKSH GNPK +R LS CACGDDN IVEDTPAADVHVDDAELGAFLD+M+GSAL+IR+GR+IAGNVLGLSAW GVWW
Sbjct:    1 MLQFMTGPHRIASGLRTIAKSHYGNPKNLRLLSACACGDDNLIVEDTPAADVHVDDAELGAFLDEMNGSALSIRMGRDIAGNVLGLSAWCGVWW 94
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5K3D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D5_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.420e-49
Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = -2 
Query:   47 MLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMDGSALNIRLGREIAGNVLGLSAWYGVW 325
            ML+F+TGPRRIASGLLTIAKSH GNPKIMR LSP ACGDDN  VEDTPAA VHVDDAELGAFLD+MDGSAL+IR+GREIAGNVLGLSAW GVW
Sbjct:    1 MLRFMTGPRRIASGLLTIAKSHYGNPKIMRLLSPHACGDDNLSVEDTPAAGVHVDDAELGAFLDEMDGSALSIRMGREIAGNVLGLSAWCGVW 93
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5KLK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.330e-27
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = -2 
Query:  125 MLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMD 325
            MLQF+TGPRR ASG+LTI KS  GNPKIMRFLSP A GDDN IVE+TPA DVHV+DAELGA+LD+M+
Sbjct:    1 MLQFMTGPRRHASGILTIPKSDYGNPKIMRFLSPHAGGDDNLIVEETPAEDVHVEDAELGAYLDEMN 67
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5JUE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.320e-26
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = -2 
Query:  125 FWYSMLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMD 337
            FWYSMLQF+TGPRR ASG+LTI  S  GNPKIMRFLSP A G+DN +VE+TPA DVHV+D++LGA+LD+M+
Sbjct:  253 FWYSMLQFMTGPRRHASGILTIPNSDYGNPKIMRFLSPHAGGNDNLVVEETPAEDVHVEDSDLGAYLDEMN 323
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.180e-24
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = -2 
Query:  125 FWYSMLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMD 337
            FW SMLQF+TGPRR ASG+LTI KS  GNPKIMRFLSP   G+DN +VE+TPA DVHV+D++LG +LD+M+
Sbjct:  302 FWNSMLQFMTGPRRHASGILTIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDVHVEDSDLGEYLDEMN 372
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5JV29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV29_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.980e-23
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = -2 
Query:  125 MLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMD 325
            + QF+TGPRR ASG+LTI KS  GNPKIMRFLSP   G+DN +VE+TPA DVHV+D++LGA+LD+M+
Sbjct:   83 LAQFMTGPRRHASGILTIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDVHVEDSDLGAYLDEMN 149
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5KA09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA09_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.310e-22
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = -2 
Query:  125 NSFWYSMLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVDDAELGAFLDDMD 343
              FWYSMLQF+TGPRRIASG+LTI KS  GNPKIMRFLSP A G+DN +VE+TPA      D++LGA+LD+M+
Sbjct:  164 EKFWYSMLQFMTGPRRIASGILTIPKSDYGNPKIMRFLSPHAGGNDNLVVEETPAEG---GDSDLGAYLDEMN 233
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.500e-19
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = -2 
Query:  161 NSFWYSMLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADVHVD 343
              FWYSMLQF+TGPRR  SG+LTI KS  GNPKIMRFLSP A G DN +VE+TPA DVHV+
Sbjct:  317 EGFWYSMLQFMTGPRRHVSGILTIPKSDYGNPKIMRFLSPHAGGKDNLVVEETPAEDVHVE 377
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-18
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = -2 
Query:  170 NSFWYSMLQFITGPRRIASGLLTIAKSHCGNPKIMRFLSPCACGDDNRIVEDTPAADV 343
              FWYSMLQF+TGPRR ASG+LTI KS  GNPKIMRFLSP   G+DN +VE+TPA DV
Sbjct:   82 EGFWYSMLQFMTGPRRHASGILTIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDV 139
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KWC1_9PHAE1.290e-6190.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K844_9PHAE7.490e-5084.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D5_9PHAE1.420e-4987.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLK7_9PHAE3.330e-2777.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE1_9PHAE7.320e-2671.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X8_9PHAE8.180e-2469.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV29_9PHAE9.980e-2367.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA09_9PHAE1.310e-2267.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEJ3_9PHAE2.500e-1972.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1Q8_9PHAE1.200e-1872.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig97contigE-siliculosus-1a_M_contig97:144695..145050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size342
Model size356
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.6527529-UTR-E-siliculosus-1a_M_contig97:144694..1447081622936541.6527529-UTR-E-siliculosus-1a_M_contig97:144694..144708Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig97 144695..144708 +
1696251122.8190694-UTR-E-siliculosus-1a_M_contig97:144694..1447081696251122.8190694-UTR-E-siliculosus-1a_M_contig97:144694..144708Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig97 144695..144708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.6753554-CDS-E-siliculosus-1a_M_contig97:144708..1450501622936541.6753554-CDS-E-siliculosus-1a_M_contig97:144708..145050Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 144709..145050 +
1696251122.8279061-CDS-E-siliculosus-1a_M_contig97:144708..1450501696251122.8279061-CDS-E-siliculosus-1a_M_contig97:144708..145050Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 144709..145050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig97.17643.1prot_E-siliculosus-1a_M_contig97.17643.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig97 144709..145050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig97.17643.1

>prot_E-siliculosus-1a_M_contig97.17643.1 ID=prot_E-siliculosus-1a_M_contig97.17643.1|Name=mRNA_E-siliculosus-1a_M_contig97.17643.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=114bp
MYKQPAPSHSHQTPYQALRPRTLPAISRPKRMLSADPSMSSRNAPSSASS
TCTSAAGVSSTMRLSSPQAHGDRKRMILGFPQCDLAMVRSPEAMRRGPVM
NCSMEYQKLFQST*
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mRNA from alignment at E-siliculosus-1a_M_contig97:144695..145050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig97.17643.1 ID=mRNA_E-siliculosus-1a_M_contig97.17643.1|Name=mRNA_E-siliculosus-1a_M_contig97.17643.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=356bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:144695..145050+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATTGCCGAACGCTATGTACAAGCAACCTGCTCCCTCCCACTCCCACCAA
ACACCATACCAAGCGCTAAGGCCGAGAACATTGCCAGCAATTTCGCGACC
CAAGCGGATGTTAAGCGCTGATCCGTCCATGTCGTCGAGAAATGCGCCGA
GCTCGGCATCGTCGACGTGCACGTCTGCGGCCGGGGTGTCTTCCACGATG
CGATTGTCGTCCCCGCAGGCGCACGGGGACAGGAAGCGCATGATCTTGGG
GTTCCCGCAGTGCGACTTGGCGATGGTCAGGAGTCCGGAGGCTATGCGAC
GCGGGCCCGTTATGAACTGCAGCATGGAGTACCAGAAACTGTTCCAAAGC
ACGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:144695..145050+

>mRNA_E-siliculosus-1a_M_contig97.17643.1 ID=mRNA_E-siliculosus-1a_M_contig97.17643.1|Name=mRNA_E-siliculosus-1a_M_contig97.17643.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:144695..145050+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTACAAGCAACCTGCTCCCTCCCACTCCCACCAAACACCATACCAAGC
GCTAAGGCCGAGAACATTGCCAGCAATTTCGCGACCCAAGCGGATGTTAA
GCGCTGATCCGTCCATGTCGTCGAGAAATGCGCCGAGCTCGGCATCGTCG
ACGTGCACGTCTGCGGCCGGGGTGTCTTCCACGATGCGATTGTCGTCCCC
GCAGGCGCACGGGGACAGGAAGCGCATGATCTTGGGGTTCCCGCAGTGCG
ACTTGGCGATGGTCAGGAGTCCGGAGGCTATGCGACGCGGGCCCGTTATG
AACTGCAGCATGGAGTACCAGAAACTGTTCCAAAGCACGTAGATGTACAA
GCAACCTGCTCCCTCCCACTCCCACCAAACACCATACCAAGCGCTAAGGC
CGAGAACATTGCCAGCAATTTCGCGACCCAAGCGGATGTTAAGCGCTGAT
CCGTCCATGTCGTCGAGAAATGCGCCGAGCTCGGCATCGTCGACGTGCAC
GTCTGCGGCCGGGGTGTCTTCCACGATGCGATTGTCGTCCCCGCAGGCGC
ACGGGGACAGGAAGCGCATGATCTTGGGGTTCCCGCAGTGCGACTTGGCG
ATGGTCAGGAGTCCGGAGGCTATGCGACGCGGGCCCGTTATGAACTGCAG
CATGGAGTACCAGAAACTGTTCCAAAGCACGTAG
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