Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot
Match: B5LWH5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH5_9PHYC) HSP 1 Score: 81.3 bits (199), Expect = 1.620e-16 Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 1 Query: 1 VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQGAHVELSTLVTVDGERSMQPV-IKSSPTSTTFSSLRGGLVANLTIDGSISWDRDESCLYLYANKAFRFKYMESNGVSPSMLVLEGLNPTTL--QYTPKFEISSD 450
++CG +VH + G+ +S F YD++S + EVSR+ ++ +S S +MQPV I +S S SS L LT+DG ISWD +CLYL A+K FRF++ ES+GV+PS L+LE L Y PK E +S+
Sbjct: 20 MSCGDVVHGEVVNI--GDLVCSS-FSYDEESGEAREVSRDDVIVDSSSGSVSFRSSVR---SKNSTMQPVLISASSQSCVKSSTDNELFTTLTLDGGISWDSSTACLYLSADKLFRFRFAESDGVNPSRLILEALGSENGGGTYLPKAEFTSE 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 453 |
| Model size | 453 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936541.336086-CDS-E-siliculosus-1a_M_contig96:570999..571452 | 1622936541.336086-CDS-E-siliculosus-1a_M_contig96:570999..571452 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 571000..571452 + |
| 1696251122.7387683-CDS-E-siliculosus-1a_M_contig96:570999..571452 | 1696251122.7387683-CDS-E-siliculosus-1a_M_contig96:570999..571452 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 571000..571452 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17621.1 >prot_E-siliculosus-1a_M_contig96.17621.1 ID=prot_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=151bp
VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQG
AHVELSTLVTVDGERSMQPVIKSSPTSTTFSSLRGGLVANLTIDGSISWD
RDESCLYLYANKAFRFKYMESNGVSPSMLVLEGLNPTTLQYTPKFEISSD
* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:571000..571452+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=453bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTCTGG
GAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAGATA
CGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGGGAT
CGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCAGAT
TGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:571000..571452+ >mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTCTGG
GAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAGATA
CGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGGGAT
CGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCAGAT
TGAGTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTC
TGGGAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAG
ATACGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAG
GGCGCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAG
TATGCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTC
TGCGAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGG
GATCGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATT
CAAGTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAG
GGTTGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCA
GATTGA back to top
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