mRNA_E-siliculosus-1a_M_contig96.17621.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig96.17621.1
Unique Name	mRNA_E-siliculosus-1a_M_contig96.17621.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot
Match: B5LWH5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH5_9PHYC)

HSP 1 Score: 81.3 bits (199), Expect = 1.620e-16
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 1

Query:    1 VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQGAHVELSTLVTVDGERSMQPV-IKSSPTSTTFSSLRGGLVANLTIDGSISWDRDESCLYLYANKAFRFKYMESNGVSPSMLVLEGLNPTTL--QYTPKFEISSD 450
            ++CG +VH     +  G+   +S F YD++S +  EVSR+  ++ +S        S         +MQPV I +S  S   SS    L   LT+DG ISWD   +CLYL A+K FRF++ ES+GV+PS L+LE L        Y PK E +S+
Sbjct:   20 MSCGDVVHGEVVNI--GDLVCSS-FSYDEESGEAREVSRDDVIVDSSSGSVSFRSSVR---SKNSTMQPVLISASSQSCVKSSTDNELFTTLTLDGGISWDSSTACLYLSADKLFRFRFAESDGVNPSRLILEALGSENGGGTYLPKAEFTSE 166

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
B5LWH5_9PHYC	1.620e-16	37.91	Uncharacterized protein n=1 Tax=Feldmannia species...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig96	contig	E-siliculosus-1a_M_contig96:571000..571452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Properties


Property Name	Value
Start	0
Stop	1
Cds size	453
Model size	453
Exons	1
Hectar predicted targeting category	other localisation

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936541.336086-CDS-E-siliculosus-1a_M_contig96:570999..571452	1622936541.336086-CDS-E-siliculosus-1a_M_contig96:570999..571452	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig96 571000..571452 +
1696251122.7387683-CDS-E-siliculosus-1a_M_contig96:570999..571452	1696251122.7387683-CDS-E-siliculosus-1a_M_contig96:570999..571452	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig96 571000..571452 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig96.17621.1	prot_E-siliculosus-1a_M_contig96.17621.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig96 571000..571452 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig96:571000..571452+
coding sequence from alignment at E-siliculosus-1a_M_contig96:571000..571452+

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17621.1

>prot_E-siliculosus-1a_M_contig96.17621.1 ID=prot_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=151bp
VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQG
AHVELSTLVTVDGERSMQPVIKSSPTSTTFSSLRGGLVANLTIDGSISWD
RDESCLYLYANKAFRFKYMESNGVSPSMLVLEGLNPTTLQYTPKFEISSD
*

mRNA from alignment at E-siliculosus-1a_M_contig96:571000..571452+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=453bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTCTGG
GAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAGATA
CGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGGGAT
CGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCAGAT
TGA

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:571000..571452+

>mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTCTGG
GAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAGATA
CGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGGGAT
CGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCAGAT
TGAGTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTC
TGGGAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAG
ATACGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAG
GGCGCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAG
TATGCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTC
TGCGAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGG
GATCGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATT
CAAGTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAG
GGTTGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCA
GATTGA