mRNA_E-siliculosus-1a_M_contig96.17621.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17621.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17621.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot
Match: B5LWH5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH5_9PHYC)

HSP 1 Score: 81.3 bits (199), Expect = 1.620e-16
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:    1 VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQGAHVELSTLVTVDGERSMQPV-IKSSPTSTTFSSLRGGLVANLTIDGSISWDRDESCLYLYANKAFRFKYMESNGVSPSMLVLEGLNPTTL--QYTPKFEISSD 450
            ++CG +VH     +  G+   +S F YD++S +  EVSR+  ++ +S        S         +MQPV I +S  S   SS    L   LT+DG ISWD   +CLYL A+K FRF++ ES+GV+PS L+LE L        Y PK E +S+
Sbjct:   20 MSCGDVVHGEVVNI--GDLVCSS-FSYDEESGEAREVSRDDVIVDSSSGSVSFRSSVR---SKNSTMQPVLISASSQSCVKSSTDNELFTTLTLDGGISWDSSTACLYLSADKLFRFRFAESDGVNPSRLILEALGSENGGGTYLPKAEFTSE 166
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWH5_9PHYC1.620e-1637.91Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:571000..571452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size453
Model size453
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.336086-CDS-E-siliculosus-1a_M_contig96:570999..5714521622936541.336086-CDS-E-siliculosus-1a_M_contig96:570999..571452Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 571000..571452 +
1696251122.7387683-CDS-E-siliculosus-1a_M_contig96:570999..5714521696251122.7387683-CDS-E-siliculosus-1a_M_contig96:570999..571452Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 571000..571452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17621.1prot_E-siliculosus-1a_M_contig96.17621.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 571000..571452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17621.1

>prot_E-siliculosus-1a_M_contig96.17621.1 ID=prot_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=151bp
VACGTIVHNNKTQVASGNTQSNSRFVYDQQSQDTTEVSRNATVLGASGQG
AHVELSTLVTVDGERSMQPVIKSSPTSTTFSSLRGGLVANLTIDGSISWD
RDESCLYLYANKAFRFKYMESNGVSPSMLVLEGLNPTTLQYTPKFEISSD
*
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mRNA from alignment at E-siliculosus-1a_M_contig96:571000..571452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=453bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTCTGG
GAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAGATA
CGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGGGAT
CGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCAGAT
TGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:571000..571452+

>mRNA_E-siliculosus-1a_M_contig96.17621.1 ID=mRNA_E-siliculosus-1a_M_contig96.17621.1|Name=mRNA_E-siliculosus-1a_M_contig96.17621.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:571000..571452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTCTGG
GAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAGATA
CGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGGGAT
CGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCAGAT
TGAGTGGCTTGTGGTACGATAGTGCACAATAACAAGACACAAGTGGCTTC
TGGGAACACTCAAAGCAATTCCCGTTTTGTGTATGACCAGCAGAGTCAAG
ATACGACGGAAGTGAGTAGGAATGCAACTGTCTTGGGTGCATCTGGTCAG
GGCGCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAG
TATGCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGTTTTCCTCTC
TGCGAGGAGGGTTGGTCGCGAACCTAACAATCGATGGGTCCATCTCATGG
GATCGAGACGAGTCTTGTCTGTACTTATATGCCAACAAGGCATTTCGATT
CAAGTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAG
GGTTGAATCCAACAACTCTTCAATACACGCCCAAATTTGAGATATCGTCA
GATTGA
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