mRNA_E-siliculosus-1a_M_contig96.17620.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig96.17620.1
Unique Name	mRNA_E-siliculosus-1a_M_contig96.17620.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot
Match: Q6XM58_9PHYC (FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM58_9PHYC)

HSP 1 Score: 95.9 bits (237), Expect = 2.880e-23
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1

Query:   25 FAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHAEVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCLNCLTFMKANHVTRVFFTDGLG-FTKINL 342
            F  C+ L   SQH  F HGA+   R    ++GKGSNR + HAEVS+++ + Q  +H  L VYVCRVN+ G+FMNS+PC NC+ +MK   V RV+++D  G F+K+ L
Sbjct:    9 FLECQHLAKFSQHPVFRHGALVTNRTT--IVGKGSNRSSLHAEVSALQNV-QGGQHMRLRVYVCRVNARGKFMNSKPCQNCMNYMKHRGVYRVYYSDDAGGFSKLVL 112

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
Q6XM58_9PHYC	2.880e-23	47.66	FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig96	contig	E-siliculosus-1a_M_contig96:567541..567885 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	345
Model size	345
Exons	1
Hectar predicted targeting category	other localisation

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936541.3046384-CDS-E-siliculosus-1a_M_contig96:567540..567885	1622936541.3046384-CDS-E-siliculosus-1a_M_contig96:567540..567885	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig96 567541..567885 -
1696251122.7258732-CDS-E-siliculosus-1a_M_contig96:567540..567885	1696251122.7258732-CDS-E-siliculosus-1a_M_contig96:567540..567885	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig96 567541..567885 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig96.17620.1	prot_E-siliculosus-1a_M_contig96.17620.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig96 567541..567885 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig96:567541..567885-
coding sequence from alignment at E-siliculosus-1a_M_contig96:567541..567885-

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17620.1

>prot_E-siliculosus-1a_M_contig96.17620.1 ID=prot_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=115bp
MKRQHTDYFAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHA
EVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCLNCLTFMKANHVTR
VFFTDGLGFTKINL*

mRNA from alignment at E-siliculosus-1a_M_contig96:567541..567885-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig96.17620.1 ID=mRNA_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=345bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:567541..567885- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGAGACAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTC
GAGGTCTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAA
GAGGTCACCGCGTGCTGGGAAAAGGCAGCAATCGCCACAATGCGCATGCT
GAAGTCAGCTCAATCAAGGCCATTCCACAGTACCAGCGGCACGACAACTT
GGTCGTGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCAA
GGCCATGCCTCAATTGCTTAACTTTTATGAAGGCCAACCACGTCACAAGA
GTCTTCTTCACAGACGGACTCGGCTTCACAAAGATAAATCTTTAA

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:567541..567885-

>mRNA_E-siliculosus-1a_M_contig96.17620.1 ID=mRNA_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=690bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:567541..567885- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGAGACAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTC
GAGGTCTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAA
GAGGTCACCGCGTGCTGGGAAAAGGCAGCAATCGCCACAATGCGCATGCT
GAAGTCAGCTCAATCAAGGCCATTCCACAGTACCAGCGGCACGACAACTT
GGTCGTGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCAA
GGCCATGCCTCAATTGCTTAACTTTTATGAAGGCCAACCACGTCACAAGA
GTCTTCTTCACAGACGGACTCGGCTTCACAAAGATAAATCTTTAAATGAA
GAGACAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTCGAGGT
CTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAAGAGGT
CACCGCGTGCTGGGAAAAGGCAGCAATCGCCACAATGCGCATGCTGAAGT
CAGCTCAATCAAGGCCATTCCACAGTACCAGCGGCACGACAACTTGGTCG
TGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCAAGGCCA
TGCCTCAATTGCTTAACTTTTATGAAGGCCAACCACGTCACAAGAGTCTT
CTTCACAGACGGACTCGGCTTCACAAAGATAAATCTTTAA