Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot
Match: Q6XM58_9PHYC (FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM58_9PHYC) HSP 1 Score: 95.9 bits (237), Expect = 2.880e-23 Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 Query: 25 FAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHAEVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCLNCLTFMKANHVTRVFFTDGLG-FTKINL 342
F C+ L SQH F HGA+ R ++GKGSNR + HAEVS+++ + Q +H L VYVCRVN+ G+FMNS+PC NC+ +MK V RV+++D G F+K+ L
Sbjct: 9 FLECQHLAKFSQHPVFRHGALVTNRTT--IVGKGSNRSSLHAEVSALQNV-QGGQHMRLRVYVCRVNARGKFMNSKPCQNCMNYMKHRGVYRVYYSDDAGGFSKLVL 112
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 345 |
| Model size | 345 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936541.3046384-CDS-E-siliculosus-1a_M_contig96:567540..567885 | 1622936541.3046384-CDS-E-siliculosus-1a_M_contig96:567540..567885 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 567541..567885 - |
| 1696251122.7258732-CDS-E-siliculosus-1a_M_contig96:567540..567885 | 1696251122.7258732-CDS-E-siliculosus-1a_M_contig96:567540..567885 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 567541..567885 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17620.1 >prot_E-siliculosus-1a_M_contig96.17620.1 ID=prot_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=115bp
MKRQHTDYFAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHA
EVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCLNCLTFMKANHVTR
VFFTDGLGFTKINL* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:567541..567885- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17620.1 ID=mRNA_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=345bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:567541..567885- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGAGACAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTC
GAGGTCTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAA
GAGGTCACCGCGTGCTGGGAAAAGGCAGCAATCGCCACAATGCGCATGCT
GAAGTCAGCTCAATCAAGGCCATTCCACAGTACCAGCGGCACGACAACTT
GGTCGTGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCAA
GGCCATGCCTCAATTGCTTAACTTTTATGAAGGCCAACCACGTCACAAGA
GTCTTCTTCACAGACGGACTCGGCTTCACAAAGATAAATCTTTAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:567541..567885- >mRNA_E-siliculosus-1a_M_contig96.17620.1 ID=mRNA_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=690bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:567541..567885- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGAGACAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTC
GAGGTCTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAA
GAGGTCACCGCGTGCTGGGAAAAGGCAGCAATCGCCACAATGCGCATGCT
GAAGTCAGCTCAATCAAGGCCATTCCACAGTACCAGCGGCACGACAACTT
GGTCGTGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCAA
GGCCATGCCTCAATTGCTTAACTTTTATGAAGGCCAACCACGTCACAAGA
GTCTTCTTCACAGACGGACTCGGCTTCACAAAGATAAATCTTTAAATGAA
GAGACAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTCGAGGT
CTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAAGAGGT
CACCGCGTGCTGGGAAAAGGCAGCAATCGCCACAATGCGCATGCTGAAGT
CAGCTCAATCAAGGCCATTCCACAGTACCAGCGGCACGACAACTTGGTCG
TGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCAAGGCCA
TGCCTCAATTGCTTAACTTTTATGAAGGCCAACCACGTCACAAGAGTCTT
CTTCACAGACGGACTCGGCTTCACAAAGATAAATCTTTAA back to top
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