mRNA_E-siliculosus-1a_M_contig96.17619.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: Q6XLX7_9PHYC (FirrV-1-C1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX7_9PHYC) HSP 1 Score: 80.1 bits (196), Expect = 2.810e-13 Identity = 79/280 (28.21%), Postives = 128/280 (45.71%), Query Frame = 1 Query: 73 FGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYG---SNARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNG-VVDLSFSFATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDGPLDLFKIVFEATMYTHLADVSWNSVFGANVYTATYVTDGIEHTMLQDST-------ELSVTTTELY---PGQTYEFRLYTDSDPSTPVVTLAETTPVLDASTGSELAQRL 870
+G A FDGT+ L +VP+ + NS R+ S+WIYP ++ + I+ SN ++ + + + +F + P+++W HV VT++ S+T+ YVNG VV A T A G A + + G + DFR Y + A +A + S GP D++ + A +YT+L D++W G T I T+ D+T E T T ++ PG+ + F L D V TL + P + ST ++L + L
Sbjct: 42 YGTAAYFDGTT---RLEIQNVPTSLSNNSARSISVWIYPVSASDHNTILTSREDVSNVHVLQYRTDFNVALQNINVGVFSPSNSC--PLNTWTHVGVTYNGSNTVTLYVNGSVVAQRTDMAWNLTNAEMKLFG--ARDEGSKFFNGNMLDFRLYGGDIGATEMASIASSGP-DIYSL--SANVYTYLVDLTWR---GGE-------TTSITRTLSTDTTSVFDVPFETGETNTRIFVLNPGEDHTFHLIVDGSV---VNTLVVSVPTVSESTVADLLEAL 298
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: V5BX49_9GAMM (PDK repeat-containing protein n=2 Tax=Methyloglobulus TaxID=1410680 RepID=V5BX49_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 6.060e-5 Identity = 54/188 (28.72%), Postives = 88/188 (46.81%), Query Frame = 1 Query: 4 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTL---AASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALFFKI-GTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFS-FATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVA 552
D+SGNG + T V G+FG+ F+GT++ + + A+ + +GM T W+ P N ++ + F + + +V V F +I GT +PV++W H+AVT+D T +VNG S + I T GP IG ++ G + GY+ + R Y+ AL +A
Sbjct: 309 DASGNGNNGVMTNAVRVAP--GKFGNALQFNGTNALVKINDSASLKLTTGM------TLEAWVMPSAINNLWKDVIEKGDDNYF-LMATSNRSSVPVGGGTFGEINGTSALPVNTWTHLAVTYDGV-TQRLFVNGAQVSSIARTGNIATSTGPLQIGGDSIYGQY--FNGYIDEVRVYNRALAQTEIA 484
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: UPI001904EC12 (Ig-like domain-containing protein n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI001904EC12) HSP 1 Score: 55.5 bits (132), Expect = 8.030e-5 Identity = 61/198 (30.81%), Postives = 82/198 (41.41%), Query Frame = 1 Query: 4 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGD-SNTNGNIIVYGSNARPFRFLWNQST----------RTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATI--NTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGL 558
D S NG D + VS T GQ G F GT S + L D+P + T + WI P + S ++G II + W ST R A IG+ IPV +W HVA T+D SD M ++NGV D S S I P A+G G + G + + + Y AL+ + L
Sbjct: 1270 DVSPNGFDGSIASGVSRT-ASGQLGRALDFSGTDSRVNLGTLDIPGAEM-----TIAAWIRPDNFSVSDGRIISKATGLSGNEHFWMLSTISDGGTKLRMRLKTNAGGTRTLIGSTNIPVGAWTHVAGTYDGSD-MKIFINGVEDGSLSAGGIIAQNETVPVAVGDQPQGGR--SFSGLIDEVQIYTLALNVNDIQSL 1458
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: UPI001F21DF71 (LamG domain-containing protein n=1 Tax=Paenibacillus sp. JJ-42 TaxID=2905648 RepID=UPI001F21DF71) HSP 1 Score: 55.1 bits (131), Expect = 8.730e-5 Identity = 38/140 (27.14%), Postives = 68/140 (48.57%), Query Frame = 1 Query: 151 GNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDG 570
G S T + W+ + + ++ +L+ ST V +GT IPV+ W H+AVT+D + T Y+NGV++ S + + + +G IG S GNL ++G++ D + ++ AL + ++ Y G
Sbjct: 720 GTSSFTATAWVKHDGAASTAKYVIQQDGTNGKIWLYRDSTGVVGTYLGGLPLLGTTNIPVNQWVHLAVTYDGT-TAKVYMNGVLENSAARSVTSEASG-IIIGASKTFGNL--WKGWIDDTQVFNRALSSTEISDQYELG 855
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: A0A0Q8VDQ4_9ACTN (Fibronectin type-III domain-containing protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8VDQ4_9ACTN) HSP 1 Score: 55.1 bits (131), Expect = 9.500e-5 Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 1 Query: 4 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYGS-NARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFA-TINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDA 531
D+SG+G V AT G++G SFDGT+ ++ D PS L +SP T W+ P S+ I++ + N + T IGT +P+++W+HVA T+D S + YVNG + + ++A + T A P +G +A+ G + G L + R + A
Sbjct: 1142 DASGSG---NGGSVFQATWTAGKYGTALSFDGTNDYASVP--DAPSLDL-SSPMTLEAWVRPTASSGWRTILMKETPNDLAYSLYATSGTNRPSAWIGGGSSIGTAALPLNTWSHVASTYDGSR-LRLYVNGTLVTNAAYAGAVPTSASPLKLGGNAVWGEF--FAGQLDEVRIFSAA 1310 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17619.1 >prot_E-siliculosus-1a_M_contig96.17619.1 ID=prot_E-siliculosus-1a_M_contig96.17619.1|Name=mRNA_E-siliculosus-1a_M_contig96.17619.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=298bp EDSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGMLback to top mRNA from alignment at E-siliculosus-1a_M_contig96:561325..562218+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17619.1 ID=mRNA_E-siliculosus-1a_M_contig96.17619.1|Name=mRNA_E-siliculosus-1a_M_contig96.17619.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:561325..562218+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:561325..562218+ >mRNA_E-siliculosus-1a_M_contig96.17619.1 ID=mRNA_E-siliculosus-1a_M_contig96.17619.1|Name=mRNA_E-siliculosus-1a_M_contig96.17619.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1788bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:561325..562218+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |