mRNA_E-siliculosus-1a_M_contig96.17619.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17619.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17619.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: Q6XLX7_9PHYC (FirrV-1-C1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX7_9PHYC)

HSP 1 Score: 80.1 bits (196), Expect = 2.810e-13
Identity = 79/280 (28.21%), Postives = 128/280 (45.71%), Query Frame = 1 
Query:   73 FGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYG---SNARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNG-VVDLSFSFATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDGPLDLFKIVFEATMYTHLADVSWNSVFGANVYTATYVTDGIEHTMLQDST-------ELSVTTTELY---PGQTYEFRLYTDSDPSTPVVTLAETTPVLDASTGSELAQRL 870
            +G  A FDGT+    L   +VP+ +  NS R+ S+WIYP  ++ +  I+      SN    ++  + +     +   +F    +   P+++W HV VT++ S+T+  YVNG VV      A   T A     G  A +     + G + DFR Y   + A  +A + S GP D++ +   A +YT+L D++W    G         T  I  T+  D+T       E   T T ++   PG+ + F L  D      V TL  + P +  ST ++L + L
Sbjct:   42 YGTAAYFDGTT---RLEIQNVPTSLSNNSARSISVWIYPVSASDHNTILTSREDVSNVHVLQYRTDFNVALQNINVGVFSPSNSC--PLNTWTHVGVTYNGSNTVTLYVNGSVVAQRTDMAWNLTNAEMKLFG--ARDEGSKFFNGNMLDFRLYGGDIGATEMASIASSGP-DIYSL--SANVYTYLVDLTWR---GGE-------TTSITRTLSTDTTSVFDVPFETGETNTRIFVLNPGEDHTFHLIVDGSV---VNTLVVSVPTVSESTVADLLEAL 298
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: V5BX49_9GAMM (PDK repeat-containing protein n=2 Tax=Methyloglobulus TaxID=1410680 RepID=V5BX49_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 6.060e-5
Identity = 54/188 (28.72%), Postives = 88/188 (46.81%), Query Frame = 1 
Query:    4 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTL---AASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALFFKI-GTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFS-FATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVA 552
            D+SGNG +   T  V      G+FG+   F+GT++ + +   A+  + +GM      T   W+ P   N     ++   +   F  +   +  +V V    F +I GT  +PV++W H+AVT+D   T   +VNG    S +    I T  GP  IG  ++ G    + GY+ + R Y+ AL    +A
Sbjct:  309 DASGNGNNGVMTNAVRVAP--GKFGNALQFNGTNALVKINDSASLKLTTGM------TLEAWVMPSAINNLWKDVIEKGDDNYF-LMATSNRSSVPVGGGTFGEINGTSALPVNTWTHLAVTYDGV-TQRLFVNGAQVSSIARTGNIATSTGPLQIGGDSIYGQY--FNGYIDEVRVYNRALAQTEIA 484
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: UPI001904EC12 (Ig-like domain-containing protein n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI001904EC12)

HSP 1 Score: 55.5 bits (132), Expect = 8.030e-5
Identity = 61/198 (30.81%), Postives = 82/198 (41.41%), Query Frame = 1 
Query:    4 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGD-SNTNGNIIVYGSNARPFRFLWNQST----------RTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATI--NTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGL 558
            D S NG D +    VS T   GQ G    F GT S + L   D+P   +     T + WI P + S ++G II   +        W  ST          R    A      IG+  IPV +W HVA T+D SD M  ++NGV D S S   I       P A+G     G    + G + + + Y  AL+   +  L
Sbjct: 1270 DVSPNGFDGSIASGVSRT-ASGQLGRALDFSGTDSRVNLGTLDIPGAEM-----TIAAWIRPDNFSVSDGRIISKATGLSGNEHFWMLSTISDGGTKLRMRLKTNAGGTRTLIGSTNIPVGAWTHVAGTYDGSD-MKIFINGVEDGSLSAGGIIAQNETVPVAVGDQPQGGR--SFSGLIDEVQIYTLALNVNDIQSL 1458
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: UPI001F21DF71 (LamG domain-containing protein n=1 Tax=Paenibacillus sp. JJ-42 TaxID=2905648 RepID=UPI001F21DF71)

HSP 1 Score: 55.1 bits (131), Expect = 8.730e-5
Identity = 38/140 (27.14%), Postives = 68/140 (48.57%), Query Frame = 1 
Query:  151 GNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDG 570
            G S  T + W+    + +    ++         +L+  ST  V         +GT  IPV+ W H+AVT+D + T   Y+NGV++ S + +  +  +G   IG S   GNL  ++G++ D + ++ AL +  ++  Y  G
Sbjct:  720 GTSSFTATAWVKHDGAASTAKYVIQQDGTNGKIWLYRDSTGVVGTYLGGLPLLGTTNIPVNQWVHLAVTYDGT-TAKVYMNGVLENSAARSVTSEASG-IIIGASKTFGNL--WKGWIDDTQVFNRALSSTEISDQYELG 855
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: A0A0Q8VDQ4_9ACTN (Fibronectin type-III domain-containing protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8VDQ4_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 9.500e-5
Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 1 
Query:    4 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYGS-NARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFA-TINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDA 531
            D+SG+G       V  AT   G++G   SFDGT+   ++   D PS  L +SP T   W+ P  S+    I++  + N   +       T            IGT  +P+++W+HVA T+D S  +  YVNG +  + ++A  + T A P  +G +A+ G    + G L + R +  A
Sbjct: 1142 DASGSG---NGGSVFQATWTAGKYGTALSFDGTNDYASVP--DAPSLDL-SSPMTLEAWVRPTASSGWRTILMKETPNDLAYSLYATSGTNRPSAWIGGGSSIGTAALPLNTWSHVASTYDGSR-LRLYVNGTLVTNAAYAGAVPTSASPLKLGGNAVWGEF--FAGQLDEVRIFSAA 1310
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q6XLX7_9PHYC2.810e-1328.21FirrV-1-C1 n=1 Tax=Feldmannia irregularis virus a ... [more]
V5BX49_9GAMM6.060e-528.72PDK repeat-containing protein n=2 Tax=Methyloglobu... [more]
UPI001904EC128.030e-530.81Ig-like domain-containing protein n=1 Tax=Pelagico... [more]
UPI001F21DF718.730e-527.14LamG domain-containing protein n=1 Tax=Paenibacill... [more]
A0A0Q8VDQ4_9ACTN9.500e-529.78Fibronectin type-III domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:561325..562218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size894
Model size894
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.259421-CDS-E-siliculosus-1a_M_contig96:561324..5622181622936541.259421-CDS-E-siliculosus-1a_M_contig96:561324..562218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 561325..562218 +
1696251122.7140298-CDS-E-siliculosus-1a_M_contig96:561324..5622181696251122.7140298-CDS-E-siliculosus-1a_M_contig96:561324..562218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 561325..562218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17619.1prot_E-siliculosus-1a_M_contig96.17619.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 561325..562218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17619.1

>prot_E-siliculosus-1a_M_contig96.17619.1 ID=prot_E-siliculosus-1a_M_contig96.17619.1|Name=mRNA_E-siliculosus-1a_M_contig96.17619.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=298bp
EDSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGML
GNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALF
FKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATINTGAGPF
AIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDGPLDLFKIVFE
ATMYTHLADVSWNSVFGANVYTATYVTDGIEHTMLQDSTELSVTTTELYP
GQTYEFRLYTDSDPSTPVVTLAETTPVLDASTGSELAQRLKATSQAS*
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mRNA from alignment at E-siliculosus-1a_M_contig96:561325..562218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17619.1 ID=mRNA_E-siliculosus-1a_M_contig96.17619.1|Name=mRNA_E-siliculosus-1a_M_contig96.17619.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:561325..562218+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAAGACTCGTCGGGTAACGGTGTGGATATTACCAACACGGGTGTCGTATC
AGCAACGGACCCCCTCGGACAATTCGGGGACGTTGCTTCTTTTGACGGGA
CTAGTTCGTCTCTCACTCTTGCCGCTTCGGATGTCCCGTCCGGGATGCTG
GGGAATTCTCCCCGTACGTTTTCCCTTTGGATATACCCAGGAGACTCGAA
CACCAATGGAAATATCATCGTCTATGGATCGAATGCGAGACCGTTTCGGT
TTTTATGGAACCAGTCGACACGGACAGTCATGGTAGCATTTGCTTTGTTT
TTTAAAATAGGAACGATAGAGATACCGGTTGATAGCTGGGCACATGTTGC
AGTCACGTTTGACGCAAGCGATACCATGAACACGTACGTTAATGGTGTTG
TCGATCTAAGTTTTTCGTTTGCAACCATTAACACCGGCGCGGGCCCCTTT
GCCATAGGAAGGTCCGCTCTTAACGGTAATCTCCCCATGTACGAGGGGTA
CCTCGCTGATTTCAGGGCATACGACGATGCTCTAGATGCAGTTGCTGTAG
CCGGCCTTTACTCCGACGGGCCTCTAGATTTGTTTAAGATTGTGTTTGAA
GCAACAATGTACACTCACCTGGCCGACGTTTCGTGGAACAGTGTCTTCGG
GGCGAACGTTTACACGGCGACTTATGTGACCGATGGCATCGAGCACACGA
TGCTGCAGGATTCAACCGAATTGAGCGTCACCACCACGGAGCTATATCCT
GGTCAAACGTATGAATTCCGTCTGTACACGGACTCCGATCCATCTACCCC
GGTAGTTACACTCGCCGAGACGACACCGGTATTGGATGCCTCTACCGGTA
GTGAACTCGCTCAGAGGCTGAAAGCGACTTCACAAGCCTCGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:561325..562218+

>mRNA_E-siliculosus-1a_M_contig96.17619.1 ID=mRNA_E-siliculosus-1a_M_contig96.17619.1|Name=mRNA_E-siliculosus-1a_M_contig96.17619.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1788bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:561325..562218+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAAGACTCGTCGGGTAACGGTGTGGATATTACCAACACGGGTGTCGTATC
AGCAACGGACCCCCTCGGACAATTCGGGGACGTTGCTTCTTTTGACGGGA
CTAGTTCGTCTCTCACTCTTGCCGCTTCGGATGTCCCGTCCGGGATGCTG
GGGAATTCTCCCCGTACGTTTTCCCTTTGGATATACCCAGGAGACTCGAA
CACCAATGGAAATATCATCGTCTATGGATCGAATGCGAGACCGTTTCGGT
TTTTATGGAACCAGTCGACACGGACAGTCATGGTAGCATTTGCTTTGTTT
TTTAAAATAGGAACGATAGAGATACCGGTTGATAGCTGGGCACATGTTGC
AGTCACGTTTGACGCAAGCGATACCATGAACACGTACGTTAATGGTGTTG
TCGATCTAAGTTTTTCGTTTGCAACCATTAACACCGGCGCGGGCCCCTTT
GCCATAGGAAGGTCCGCTCTTAACGGTAATCTCCCCATGTACGAGGGGTA
CCTCGCTGATTTCAGGGCATACGACGATGCTCTAGATGCAGTTGCTGTAG
CCGGCCTTTACTCCGACGGGCCTCTAGATTTGTTTAAGATTGTGTTTGAA
GCAACAATGTACACTCACCTGGCCGACGTTTCGTGGAACAGTGTCTTCGG
GGCGAACGTTTACACGGCGACTTATGTGACCGATGGCATCGAGCACACGA
TGCTGCAGGATTCAACCGAATTGAGCGTCACCACCACGGAGCTATATCCT
GGTCAAACGTATGAATTCCGTCTGTACACGGACTCCGATCCATCTACCCC
GGTAGTTACACTCGCCGAGACGACACCGGTATTGGATGCCTCTACCGGTA
GTGAACTCGCTCAGAGGCTGAAAGCGACTTCACAAGCCTCGTGAGAAGAC
TCGTCGGGTAACGGTGTGGATATTACCAACACGGGTGTCGTATCAGCAAC
GGACCCCCTCGGACAATTCGGGGACGTTGCTTCTTTTGACGGGACTAGTT
CGTCTCTCACTCTTGCCGCTTCGGATGTCCCGTCCGGGATGCTGGGGAAT
TCTCCCCGTACGTTTTCCCTTTGGATATACCCAGGAGACTCGAACACCAA
TGGAAATATCATCGTCTATGGATCGAATGCGAGACCGTTTCGGTTTTTAT
GGAACCAGTCGACACGGACAGTCATGGTAGCATTTGCTTTGTTTTTTAAA
ATAGGAACGATAGAGATACCGGTTGATAGCTGGGCACATGTTGCAGTCAC
GTTTGACGCAAGCGATACCATGAACACGTACGTTAATGGTGTTGTCGATC
TAAGTTTTTCGTTTGCAACCATTAACACCGGCGCGGGCCCCTTTGCCATA
GGAAGGTCCGCTCTTAACGGTAATCTCCCCATGTACGAGGGGTACCTCGC
TGATTTCAGGGCATACGACGATGCTCTAGATGCAGTTGCTGTAGCCGGCC
TTTACTCCGACGGGCCTCTAGATTTGTTTAAGATTGTGTTTGAAGCAACA
ATGTACACTCACCTGGCCGACGTTTCGTGGAACAGTGTCTTCGGGGCGAA
CGTTTACACGGCGACTTATGTGACCGATGGCATCGAGCACACGATGCTGC
AGGATTCAACCGAATTGAGCGTCACCACCACGGAGCTATATCCTGGTCAA
ACGTATGAATTCCGTCTGTACACGGACTCCGATCCATCTACCCCGGTAGT
TACACTCGCCGAGACGACACCGGTATTGGATGCCTCTACCGGTAGTGAAC
TCGCTCAGAGGCTGAAAGCGACTTCACAAGCCTCGTGA
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