mRNA_E-siliculosus-1a_M_contig96.17604.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17604.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17604.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 7.610e-72
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.500e-63
Identity = 102/116 (87.93%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDK +  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.320e-62
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KK+  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 190 bits (483), Expect = 9.690e-61
Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.140e-60
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDK--KRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK G+K   R  KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.580e-60
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KK+  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 188 bits (478), Expect = 5.980e-60
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA    ++ KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.860e-59
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A APKKAG K R+ KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 181 bits (460), Expect = 3.770e-57
Identity = 100/120 (83.33%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKA--GDKK-RTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AKA KKA  GDKK R+ KR ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.350e-56
Identity = 96/112 (85.71%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 336
            MAKTPSKKSA  PKKA   KR  KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    6 MAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI7.610e-72100.00Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA1.500e-6387.93Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA2.320e-6288.89Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU9.690e-6185.34Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA1.140e-6085.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA1.580e-6088.89Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC5.980e-6084.48Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA2.860e-5986.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS3.770e-5783.33Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2U5X6_9STRA1.350e-5685.71Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:458822..459172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size351
Model size351
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.B
EggNOG OGsKOG1744@1,KOG1744@2759
EggNOG free text desc.protein heterodimerization activity
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11252
Seed eggNOG ortholog2880.D7FWI8
Seed ortholog evalue6.1e-55
Seed ortholog score219.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936537.0737534-CDS-E-siliculosus-1a_M_contig96:458821..4591721622936537.0737534-CDS-E-siliculosus-1a_M_contig96:458821..459172Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 458822..459172 +
1696251121.7598085-CDS-E-siliculosus-1a_M_contig96:458821..4591721696251121.7598085-CDS-E-siliculosus-1a_M_contig96:458821..459172Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 458822..459172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17604.1prot_E-siliculosus-1a_M_contig96.17604.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 458822..459172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17604.1

>prot_E-siliculosus-1a_M_contig96.17604.1 ID=prot_E-siliculosus-1a_M_contig96.17604.1|Name=mRNA_E-siliculosus-1a_M_contig96.17604.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig96:458822..459172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17604.1 ID=mRNA_E-siliculosus-1a_M_contig96.17604.1|Name=mRNA_E-siliculosus-1a_M_contig96.17604.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=351bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:458822..459172+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCGCCCAAGAAGGCCGG
TGACAAGAAGAGGACCAACAAGAGGACCGAGTCGTACTCGTCGTACATCT
ACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGTATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGATGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTCCTCCC
GCGAGGTCCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCTCGCCAAG
CACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCTA
A
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:458822..459172+

>mRNA_E-siliculosus-1a_M_contig96.17604.1 ID=mRNA_E-siliculosus-1a_M_contig96.17604.1|Name=mRNA_E-siliculosus-1a_M_contig96.17604.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:458822..459172+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCGCCCAAGAAGGCCGG
TGACAAGAAGAGGACCAACAAGAGGACCGAGTCGTACTCGTCGTACATCT
ACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGTATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGATGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTCCTCCC
GCGAGGTCCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCTCGCCAAG
CACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCTA
AATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCGCCCAAGAAGGCCG
GTGACAAGAAGAGGACCAACAAGAGGACCGAGTCGTACTCGTCGTACATC
TACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGTATCTCCAAGCGCGG
CATGTCCATCATGAACTCGTTCATCAACGATGTGTTCGAGCGCGTGGCCG
GCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTCCTCC
CGCGAGGTCCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCTCGCCAA
GCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCT
AA
back to top