mRNA_E-siliculosus-1a_M_contig96.17591.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: D8LQ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ85_ECTSI) HSP 1 Score: 745 bits (1924), Expect = 1.450e-266 Identity = 391/441 (88.66%), Postives = 391/441 (88.66%), Query Frame = 3 Query: 264 MSETSAAKLHATGSSAAXXXXXXXXXXTKRKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAGLLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLASVFGQMPSSTAXXXXXXXXXXXXXXAKGSPPAMXXXXXXXXXXXXXXXXXXXXXXXXACGVRRRVPDDAVGISQEKAVSLVDGN 1586
MSETSAAKL ATGSSAA TKRKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGA LLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLA VFGQMPSSTA AKG AM XXXX ACGVRRRVPDDAVGISQEKAVSLVDGN
Sbjct: 1 MSETSAAKLRATGSSAAPSAAAAPA--TKRKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLARVFGQMPSSTAAAAASPTPSSGR--AKGRSSAMKGTPQRTNGNARSSTGSXXXXSNNACGVRRRVPDDAVGISQEKAVSLVDGN 437
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A835Z0S0_9STRA (TMEM164 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S0_9STRA) HSP 1 Score: 273 bits (697), Expect = 5.960e-83 Identity = 124/245 (50.61%), Postives = 167/245 (68.16%), Query Frame = 3 Query: 624 FISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAGLLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLASVFGQMPS 1358
++S WY++P+QH++E +S++VL+PLV Y++ C LR + KR +L K+WG LL V + K+ + SHPAYL QPCHVHS+ M L AF + S ++HV+ TLWWGPFLAFVAP LP +E+ +FW QH LML R+ G+ W+YRDFWWN+VG+V LTCYH+W+LAPV+L TG+NVATM VPPD LE FG +YRP W + CGLL L AV V+ A++ G +P+
Sbjct: 55 YLSAWYITPQQHIIETIVSLVVLAPLVGFYYRKCSEGLRAHAVQDRTEKKRFPVLQKVWGGLLLLSVVLQVWFKWNYNHVSSHPAYLAQPCHVHSVAMALTAFSDASWSRGLLHVSATLWWGPFLAFVAPDLPASALEVVVFWIQHTLMLCIIIARVLTGSNWMYRDFWWNTVGYVLLTCYHFWFLAPVSLVTGINVATMMVPPDPLETFGAWYRPAWTVCCGLLHLFAVSVVNGAAAMAGVLPA 299
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A7S2V140_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V140_9STRA) HSP 1 Score: 115 bits (287), Expect = 4.120e-25 Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 636 WYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDA---KRPSLLMKLWGAGLLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVE-TEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALML 1073
W+LSP HV+E S++V +P++ K C LR + A + +P LL K+W LL + LK+ SHPAYL QPCH+ + +MGL F T + + HV T WWGP LA VAP LP E+ +F+ QH LM+
Sbjct: 81 WFLSPEHHVLEFLASLIVYTPILLFCLKQCAKSLRYQTALQQMEGITIPQPDLLQKVWAVVLLVIATLQIRLKYISLNPASHPAYLLQPCHITTFMMGLITFARPTMLTEALFHVVATTWWGPLLALVAPDLPASSFEVFLFYLQHYLMM 230
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A6I9USL5_BACDO (transmembrane protein 164 n=4 Tax=Bactrocera TaxID=27456 RepID=A0A6I9USL5_BACDO) HSP 1 Score: 73.2 bits (178), Expect = 4.290e-10 Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 3 Query: 819 LVGAGAFLKFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLP--TDPVEIAIFWAQHALMLLAPFLRLTVGTRWL--YRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
+ G KF + +I Y+ PCH+ +LV + L A ++ ++ + + GPFLAF+ P + T E A +W QHAL+ + P L G + D+ W ++G + YH+ +L P+++FTG+N++ M S G+ YR
Sbjct: 82 IFGVEMGFKFANKNMI----YVLNPCHIQTLVQIYLLAAKPSKTTIALFRIQMNNLNGPFLAFLFPEVECRTLHFEQATYWIQHALLYIIPAYILRSGAYQIEDLYDYNWTTIGTATMLLYHFAFLTPISMFTGINLSHMLCAALSDPFQGQNYR 232
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A6P5VVD2_DROOB (LOW QUALITY PROTEIN: transmembrane protein 164 n=3 Tax=obscura subgroup TaxID=32357 RepID=A0A6P5VVD2_DROOB) HSP 1 Score: 72.8 bits (177), Expect = 5.000e-10 Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 3 Query: 843 KFTKQELISHPAYLWQPCHVHS-LVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLP--TDPVEIAIFWAQHALMLLAPFLRLTVGTRWL--YRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPV----WGLICGLLQLAAV 1313
K + Q +I + PCHV + L + L A T + + + + GPFLAF+ P + T P E + +W QHAL+ + P + G + DF W+ +G F+ YH+ +L+P+++FTG+N+ M S G YR L+C LL V
Sbjct: 121 KLSGQSMI----FALNPCHVQTCLQIYLLAAKPTRTTTAMFRIQMSNLNGPFLAFLFPEVEGRTYPFEQSTYWIQHALLYIIPIYIIRSGAYTVEDLGDFHWSHIGTAFMLFYHFIFLSPLSIFTGINLDHMLCAAMSDPFQGPNYRLFACCHQALLCPLLSKGTV 282
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: B4GIZ5_DROPE (GL17784 n=7 Tax=obscura group TaxID=32355 RepID=B4GIZ5_DROPE) HSP 1 Score: 70.5 bits (171), Expect = 2.280e-9 Identity = 45/147 (30.61%), Postives = 74/147 (50.34%), Query Frame = 3 Query: 843 KFTKQELISHPAYLWQPCHVHS-LVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLP--TDPVEIAIFWAQHALMLLAPFLRLTVGTRWL--YRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
K T Q +I + PCHV + L + L A T+ + + + + GPFLA++ P + T E + +W QHAL+ + P + G+ + DF W +G F+ YH+ +L+P+++FTG+N+ M S G YR
Sbjct: 92 KLTGQSMI----FALNPCHVQTCLQIYLLAAKPTKTNTAMFRIQMSNLNGPFLAYLFPEVEGRTYHFEQSTYWIQHALLYIIPIYLIRSGSYTVEDLGDFHWTKIGTAFMLFYHFIFLSPLSIFTGINLDHMLCAAVSDPFQGPNYR 234
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A6P7FZ98_DIAVI (transmembrane protein 164 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FZ98_DIAVI) HSP 1 Score: 68.2 bits (165), Expect = 7.490e-9 Identity = 48/148 (32.43%), Postives = 70/148 (47.30%), Query Frame = 3 Query: 843 KFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTD--PVEIAIFWAQHALMLLAPFLRLTVGTRW---LYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
KF+ + +I Y+ PCHV + + + L A + V L GP LAFV P T P+E AI+W QH +M++ P+ L VG + Y D WN++ + YH+ L V + T VN+ M P G+ YR
Sbjct: 86 KFSSRTVI----YVLNPCHVTTAIQIYLLAAAPSRAVTAVFRFHLNLLNGPLLAFVFPETDTRLLPLETAIYWIQHGMMVVVPYYLLRVGGVYNVEKYSDISWNAMSYGINLLYHFIILQVVAIPTEVNLNHMLCPAILDPFDGQLYR 229
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: UPI001D086408 (transmembrane protein 164 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D086408) HSP 1 Score: 66.2 bits (160), Expect = 5.110e-8 Identity = 51/175 (29.14%), Postives = 78/175 (44.57%), Query Frame = 3 Query: 843 KFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTD--PVEIAIFWAQHALMLLAPFLRLTVGTRWLYR---DFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLASVFGQ 1349
KF+ + +I YL PCHV + + + L A ++ V V GP LAF+ P T P+E AI+W QH +M++ P+ L +G + D WN GF YH L + + T VN+ M P G +YR + + +L + CV++ Q
Sbjct: 131 KFSSRTVI----YLLNPCHVTTAIQIYLLAAAPSDLVTAVFRVHMNFLNGPLLAFLFPETDTRILPLEAAIYWIQHGMMIVVPYYLLRLGGVYHMEKLSDLSWNIFGFGMNALYHICVLQAIAIPTQVNLNHMLCPAILDPFSGPHYRKMGFIHQAILCPVLCKLFCVVSYKLNQ 301
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: UPI000E6E2577 (transmembrane protein 164-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E2577) HSP 1 Score: 65.1 bits (157), Expect = 9.280e-8 Identity = 49/162 (30.25%), Postives = 74/162 (45.68%), Query Frame = 3 Query: 843 KFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTD--PVEIAIFWAQHALMLLAPFLRLTVGTRWLY---RDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPV----WGLICGLL 1298
KF + +I Y+ PCHV + + + L A + + + GP LAF+ P + P+E AI+W QH LML+ P+ L +G + RD WN + + + YH+ L + T VN+ M P G YYR + L+C LL
Sbjct: 88 KFASKTVI----YILNPCHVTTAIQIYLLAAPPSNKVTALFRIHLNYMNGPLLAFIFPETESRMIPMEAAIYWIQHFLMLVVPYYLLRLGGVYNMEPLRDLSWNCLSYGLILIYHFVILQGFAIPTQVNLNHMLCPAILDPFQGPYYRLIASAHQALLCPLL 245
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: T1FKA4_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FKA4_HELRO) HSP 1 Score: 63.5 bits (153), Expect = 2.600e-7 Identity = 41/143 (28.67%), Postives = 70/143 (48.95%), Query Frame = 3 Query: 864 ISHPAYLW--QPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVE--IAIFWAQHALMLLAPFLRLTVGTRWLYRDF---WWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
+S ++W PCHV +++ + L ++ S L+ + G +A P + T +E +A +WAQH L+L PF +++G + DF W+ YH+ +L P++L TG+N+ + P S G YYR
Sbjct: 106 LSTRQFIWILNPCHVVTIIQIYLLIAPASKLSSLMFRFHIHMLSGVSIAICFPVVNTRLLEFEVATYWAQHLLLLFIPFYLMSLGGAYSVEDFADMTWSVFALSIQMIYHFIFLQPISLVTGINLNNIMCPAVSDPFKGTYYR 248 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17591.1 >prot_E-siliculosus-1a_M_contig96.17591.1 ID=prot_E-siliculosus-1a_M_contig96.17591.1|Name=mRNA_E-siliculosus-1a_M_contig96.17591.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=449bp MCQGDTAMSETSAAKLHATGSSAAPSAAAAAAAATKRKTFKRALKGTVGVback to top mRNA from alignment at E-siliculosus-1a_M_contig96:372944..378512- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17591.1 ID=mRNA_E-siliculosus-1a_M_contig96.17591.1|Name=mRNA_E-siliculosus-1a_M_contig96.17591.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5569bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:372944..378512- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:372944..378512- >mRNA_E-siliculosus-1a_M_contig96.17591.1 ID=mRNA_E-siliculosus-1a_M_contig96.17591.1|Name=mRNA_E-siliculosus-1a_M_contig96.17591.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2694bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:372944..378512- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |