mRNA_E-siliculosus-1a_M_contig96.17591.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17591.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17591.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: D8LQ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ85_ECTSI)

HSP 1 Score: 745 bits (1924), Expect = 1.450e-266
Identity = 391/441 (88.66%), Postives = 391/441 (88.66%), Query Frame = 3 
Query:  264 MSETSAAKLHATGSSAAXXXXXXXXXXTKRKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAGLLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLASVFGQMPSSTAXXXXXXXXXXXXXXAKGSPPAMXXXXXXXXXXXXXXXXXXXXXXXXACGVRRRVPDDAVGISQEKAVSLVDGN 1586
            MSETSAAKL ATGSSAA          TKRKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGA LLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLA VFGQMPSSTA              AKG   AM                 XXXX   ACGVRRRVPDDAVGISQEKAVSLVDGN
Sbjct:    1 MSETSAAKLRATGSSAAPSAAAAPA--TKRKTFKRALKGTVGVGLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRAIAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLARVFGQMPSSTAAAAASPTPSSGR--AKGRSSAMKGTPQRTNGNARSSTGSXXXXSNNACGVRRRVPDDAVGISQEKAVSLVDGN 437
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A835Z0S0_9STRA (TMEM164 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S0_9STRA)

HSP 1 Score: 273 bits (697), Expect = 5.960e-83
Identity = 124/245 (50.61%), Postives = 167/245 (68.16%), Query Frame = 3 
Query:  624 FISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAGLLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLASVFGQMPS 1358
            ++S WY++P+QH++E  +S++VL+PLV  Y++ C   LR        + KR  +L K+WG  LL  V    + K+    + SHPAYL QPCHVHS+ M L AF +   S  ++HV+ TLWWGPFLAFVAP LP   +E+ +FW QH LML     R+  G+ W+YRDFWWN+VG+V LTCYH+W+LAPV+L TG+NVATM VPPD LE FG +YRP W + CGLL L AV V+   A++ G +P+
Sbjct:   55 YLSAWYITPQQHIIETIVSLVVLAPLVGFYYRKCSEGLRAHAVQDRTEKKRFPVLQKVWGGLLLLSVVLQVWFKWNYNHVSSHPAYLAQPCHVHSVAMALTAFSDASWSRGLLHVSATLWWGPFLAFVAPDLPASALEVVVFWIQHTLMLCIIIARVLTGSNWMYRDFWWNTVGYVLLTCYHFWFLAPVSLVTGINVATMMVPPDPLETFGAWYRPAWTVCCGLLHLFAVSVVNGAAAMAGVLPA 299
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A7S2V140_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V140_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.120e-25
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 3 
Query:  636 WYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDA---KRPSLLMKLWGAGLLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVE-TEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALML 1073
            W+LSP  HV+E   S++V +P++    K C   LR + A    +     +P LL K+W   LL +      LK+      SHPAYL QPCH+ + +MGL  F   T  +  + HV  T WWGP LA VAP LP    E+ +F+ QH LM+
Sbjct:   81 WFLSPEHHVLEFLASLIVYTPILLFCLKQCAKSLRYQTALQQMEGITIPQPDLLQKVWAVVLLVIATLQIRLKYISLNPASHPAYLLQPCHITTFMMGLITFARPTMLTEALFHVVATTWWGPLLALVAPDLPASSFEVFLFYLQHYLMM 230
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A6I9USL5_BACDO (transmembrane protein 164 n=4 Tax=Bactrocera TaxID=27456 RepID=A0A6I9USL5_BACDO)

HSP 1 Score: 73.2 bits (178), Expect = 4.290e-10
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 3 
Query:  819 LVGAGAFLKFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLP--TDPVEIAIFWAQHALMLLAPFLRLTVGTRWL--YRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
            + G     KF  + +I    Y+  PCH+ +LV + L A   ++ ++ +  +      GPFLAF+ P +   T   E A +W QHAL+ + P   L  G   +    D+ W ++G   +  YH+ +L P+++FTG+N++ M     S    G+ YR
Sbjct:   82 IFGVEMGFKFANKNMI----YVLNPCHIQTLVQIYLLAAKPSKTTIALFRIQMNNLNGPFLAFLFPEVECRTLHFEQATYWIQHALLYIIPAYILRSGAYQIEDLYDYNWTTIGTATMLLYHFAFLTPISMFTGINLSHMLCAALSDPFQGQNYR 232
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A6P5VVD2_DROOB (LOW QUALITY PROTEIN: transmembrane protein 164 n=3 Tax=obscura subgroup TaxID=32357 RepID=A0A6P5VVD2_DROOB)

HSP 1 Score: 72.8 bits (177), Expect = 5.000e-10
Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 3 
Query:  843 KFTKQELISHPAYLWQPCHVHS-LVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLP--TDPVEIAIFWAQHALMLLAPFLRLTVGTRWL--YRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPV----WGLICGLLQLAAV 1313
            K + Q +I    +   PCHV + L + L A   T  +  +  +  +   GPFLAF+ P +   T P E + +W QHAL+ + P   +  G   +    DF W+ +G  F+  YH+ +L+P+++FTG+N+  M     S    G  YR        L+C LL    V
Sbjct:  121 KLSGQSMI----FALNPCHVQTCLQIYLLAAKPTRTTTAMFRIQMSNLNGPFLAFLFPEVEGRTYPFEQSTYWIQHALLYIIPIYIIRSGAYTVEDLGDFHWSHIGTAFMLFYHFIFLSPLSIFTGINLDHMLCAAMSDPFQGPNYRLFACCHQALLCPLLSKGTV 282
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: B4GIZ5_DROPE (GL17784 n=7 Tax=obscura group TaxID=32355 RepID=B4GIZ5_DROPE)

HSP 1 Score: 70.5 bits (171), Expect = 2.280e-9
Identity = 45/147 (30.61%), Postives = 74/147 (50.34%), Query Frame = 3 
Query:  843 KFTKQELISHPAYLWQPCHVHS-LVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLP--TDPVEIAIFWAQHALMLLAPFLRLTVGTRWL--YRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
            K T Q +I    +   PCHV + L + L A   T+ +  +  +  +   GPFLA++ P +   T   E + +W QHAL+ + P   +  G+  +    DF W  +G  F+  YH+ +L+P+++FTG+N+  M     S    G  YR
Sbjct:   92 KLTGQSMI----FALNPCHVQTCLQIYLLAAKPTKTNTAMFRIQMSNLNGPFLAYLFPEVEGRTYHFEQSTYWIQHALLYIIPIYLIRSGSYTVEDLGDFHWTKIGTAFMLFYHFIFLSPLSIFTGINLDHMLCAAVSDPFQGPNYR 234
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: A0A6P7FZ98_DIAVI (transmembrane protein 164 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FZ98_DIAVI)

HSP 1 Score: 68.2 bits (165), Expect = 7.490e-9
Identity = 48/148 (32.43%), Postives = 70/148 (47.30%), Query Frame = 3 
Query:  843 KFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTD--PVEIAIFWAQHALMLLAPFLRLTVGTRW---LYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
            KF+ + +I    Y+  PCHV + + + L A   +     V      L  GP LAFV P   T   P+E AI+W QH +M++ P+  L VG  +    Y D  WN++ +     YH+  L  V + T VN+  M  P       G+ YR
Sbjct:   86 KFSSRTVI----YVLNPCHVTTAIQIYLLAAAPSRAVTAVFRFHLNLLNGPLLAFVFPETDTRLLPLETAIYWIQHGMMVVVPYYLLRVGGVYNVEKYSDISWNAMSYGINLLYHFIILQVVAIPTEVNLNHMLCPAILDPFDGQLYR 229
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: UPI001D086408 (transmembrane protein 164 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D086408)

HSP 1 Score: 66.2 bits (160), Expect = 5.110e-8
Identity = 51/175 (29.14%), Postives = 78/175 (44.57%), Query Frame = 3 
Query:  843 KFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTD--PVEIAIFWAQHALMLLAPFLRLTVGTRWLYR---DFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLASVFGQ 1349
            KF+ + +I    YL  PCHV + + + L A   ++    V  V      GP LAF+ P   T   P+E AI+W QH +M++ P+  L +G  +      D  WN  GF     YH   L  + + T VN+  M  P       G +YR +  +   +L      + CV++    Q
Sbjct:  131 KFSSRTVI----YLLNPCHVTTAIQIYLLAAAPSDLVTAVFRVHMNFLNGPLLAFLFPETDTRILPLEAAIYWIQHGMMIVVPYYLLRLGGVYHMEKLSDLSWNIFGFGMNALYHICVLQAIAIPTQVNLNHMLCPAILDPFSGPHYRKMGFIHQAILCPVLCKLFCVVSYKLNQ 301
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: UPI000E6E2577 (transmembrane protein 164-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E2577)

HSP 1 Score: 65.1 bits (157), Expect = 9.280e-8
Identity = 49/162 (30.25%), Postives = 74/162 (45.68%), Query Frame = 3 
Query:  843 KFTKQELISHPAYLWQPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTD--PVEIAIFWAQHALMLLAPFLRLTVGTRWLY---RDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPV----WGLICGLL 1298
            KF  + +I    Y+  PCHV + + + L A   +     +  +      GP LAF+ P   +   P+E AI+W QH LML+ P+  L +G  +     RD  WN + +  +  YH+  L    + T VN+  M  P       G YYR +      L+C LL
Sbjct:   88 KFASKTVI----YILNPCHVTTAIQIYLLAAPPSNKVTALFRIHLNYMNGPLLAFIFPETESRMIPMEAAIYWIQHFLMLVVPYYLLRLGGVYNMEPLRDLSWNCLSYGLILIYHFVILQGFAIPTQVNLNHMLCPAILDPFQGPYYRLIASAHQALLCPLL 245
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Match: T1FKA4_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FKA4_HELRO)

HSP 1 Score: 63.5 bits (153), Expect = 2.600e-7
Identity = 41/143 (28.67%), Postives = 70/143 (48.95%), Query Frame = 3 
Query:  864 ISHPAYLW--QPCHVHSLV-MGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVE--IAIFWAQHALMLLAPFLRLTVGTRWLYRDF---WWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYR 1268
            +S   ++W   PCHV +++ + L     ++ S L+      +  G  +A   P + T  +E  +A +WAQH L+L  PF  +++G  +   DF    W+         YH+ +L P++L TG+N+  +  P  S    G YYR
Sbjct:  106 LSTRQFIWILNPCHVVTIIQIYLLIAPASKLSSLMFRFHIHMLSGVSIAICFPVVNTRLLEFEVATYWAQHLLLLFIPFYLMSLGGAYSVEDFADMTWSVFALSIQMIYHFIFLQPISLVTGINLNNIMCPAVSDPFKGTYYR 248
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LQ85_ECTSI1.450e-26688.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0S0_9STRA5.960e-8350.61TMEM164 family-domain-containing protein n=1 Tax=T... [more]
A0A7S2V140_9STRA4.120e-2539.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6I9USL5_BACDO4.290e-1029.68transmembrane protein 164 n=4 Tax=Bactrocera TaxID... [more]
A0A6P5VVD2_DROOB5.000e-1030.72LOW QUALITY PROTEIN: transmembrane protein 164 n=3... [more]
B4GIZ5_DROPE2.280e-930.61GL17784 n=7 Tax=obscura group TaxID=32355 RepID=B4... [more]
A0A6P7FZ98_DIAVI7.490e-932.43transmembrane protein 164 n=1 Tax=Diabrotica virgi... [more]
UPI001D0864085.110e-829.14transmembrane protein 164 n=1 Tax=Chrysoperla carn... [more]
UPI000E6E25779.280e-830.25transmembrane protein 164-like n=1 Tax=Ctenocephal... [more]
T1FKA4_HELRO2.600e-728.67Uncharacterized protein n=1 Tax=Helobdella robusta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:372944..378512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1347
Model size1879
Exons6
Ec32 orthologEc-26_005770.1
Ec32 ortholog descriptionTransmembrane protein 164
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelFungi
COG Functional cat.S
EggNOG OGs28PNH@1,2QWAJ@2759,396Y4@33154,3P41T@4751
EggNOG free text desc.Allomyces macrogynus ATCC 38327
Seed eggNOG ortholog28583.AMAG_10345T0
Seed ortholog evalue1e-12
Seed ortholog score81.6
Taxonomic scopeFungi
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17591.1prot_E-siliculosus-1a_M_contig96.17591.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 373234..378270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936535.1249352-UTR-E-siliculosus-1a_M_contig96:372943..3732331622936535.1249352-UTR-E-siliculosus-1a_M_contig96:372943..373233Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 372944..373233 -
1696251121.0922322-UTR-E-siliculosus-1a_M_contig96:372943..3732331696251121.0922322-UTR-E-siliculosus-1a_M_contig96:372943..373233Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 372944..373233 -
1622936535.2099633-UTR-E-siliculosus-1a_M_contig96:378270..3785121622936535.2099633-UTR-E-siliculosus-1a_M_contig96:378270..378512Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 378271..378512 -
1696251121.1773891-UTR-E-siliculosus-1a_M_contig96:378270..3785121696251121.1773891-UTR-E-siliculosus-1a_M_contig96:378270..378512Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 378271..378512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936535.1362164-CDS-E-siliculosus-1a_M_contig96:373233..3735211622936535.1362164-CDS-E-siliculosus-1a_M_contig96:373233..373521Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 373234..373521 -
1696251121.1102788-CDS-E-siliculosus-1a_M_contig96:373233..3735211696251121.1102788-CDS-E-siliculosus-1a_M_contig96:373233..373521Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 373234..373521 -
1622936535.1491454-CDS-E-siliculosus-1a_M_contig96:374442..3746231622936535.1491454-CDS-E-siliculosus-1a_M_contig96:374442..374623Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 374443..374623 -
1696251121.1252372-CDS-E-siliculosus-1a_M_contig96:374442..3746231696251121.1252372-CDS-E-siliculosus-1a_M_contig96:374442..374623Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 374443..374623 -
1622936535.1593237-CDS-E-siliculosus-1a_M_contig96:374778..3748611622936535.1593237-CDS-E-siliculosus-1a_M_contig96:374778..374861Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 374779..374861 -
1696251121.1370912-CDS-E-siliculosus-1a_M_contig96:374778..3748611696251121.1370912-CDS-E-siliculosus-1a_M_contig96:374778..374861Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 374779..374861 -
1622936535.1723673-CDS-E-siliculosus-1a_M_contig96:375738..3761571622936535.1723673-CDS-E-siliculosus-1a_M_contig96:375738..376157Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 375739..376157 -
1696251121.1480708-CDS-E-siliculosus-1a_M_contig96:375738..3761571696251121.1480708-CDS-E-siliculosus-1a_M_contig96:375738..376157Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 375739..376157 -
1622936535.1891916-CDS-E-siliculosus-1a_M_contig96:377072..3774381622936535.1891916-CDS-E-siliculosus-1a_M_contig96:377072..377438Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 377073..377438 -
1696251121.1578407-CDS-E-siliculosus-1a_M_contig96:377072..3774381696251121.1578407-CDS-E-siliculosus-1a_M_contig96:377072..377438Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 377073..377438 -
1622936535.1989758-CDS-E-siliculosus-1a_M_contig96:378260..3782701622936535.1989758-CDS-E-siliculosus-1a_M_contig96:378260..378270Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 378261..378270 -
1696251121.1674066-CDS-E-siliculosus-1a_M_contig96:378260..3782701696251121.1674066-CDS-E-siliculosus-1a_M_contig96:378260..378270Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 378261..378270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17591.1

>prot_E-siliculosus-1a_M_contig96.17591.1 ID=prot_E-siliculosus-1a_M_contig96.17591.1|Name=mRNA_E-siliculosus-1a_M_contig96.17591.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=449bp
MCQGDTAMSETSAAKLHATGSSAAPSAAAAAAAATKRKTFKRALKGTVGV
GLAAASAALIARSDDIGEWLQSVAPHVLPHTVVVPGGADTAVLADFVLRA
IAEAKSCVQEGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVL
SPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAGLLGLVGAGAFL
KFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGP
FLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSV
GFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICG
LLQLAAVGVMCVLASVFGQMPSSTAAAAAAASPTPSSGRAKGSPPAMTGP
PQRTNGNARSSTGSSSSSSNNACGVRRRVPDDAVGISQEKAVSLVDGN*
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mRNA from alignment at E-siliculosus-1a_M_contig96:372944..378512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17591.1 ID=mRNA_E-siliculosus-1a_M_contig96.17591.1|Name=mRNA_E-siliculosus-1a_M_contig96.17591.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5569bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:372944..378512- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACCGCCAACAAGAGTGGGAGCTGGAGCAGAGCACAGCAGCACTGTGAGC
AGCGGTGATAGCAGCCTACTGGCGGTATAGATTCCACGTCGTGAATCTGC
GTTGCAAACCGCGAGAAGCAACGGGCTTCAGCGTGGTTTCCTCGTGAACA
ATTCGTTCTCCGCCTTGTTGTTGATCGGGAGAGTTCGTCGTCGTCGACAC
TGCTCCATCATCGTCGTTGCGCCGAGGAGGCACCAAAACCAAATGTGCCA
AGGTGCGAAAAGCTGACAGAGAGAAGAGAACGCAGCTGCGTCGGCGCGGA
CGGAATCCCCCTGTAGTCATAAGGCGCCTGCCGCCCCGGGCACCGCAGGT
ATTGCCGCTGTGTGGTACATCTGTGTGTTGTCTCGGAAACAAGTCCACCT
TTTGCGTCACGTTACGAGAGACGAATAGGGAGATTCAACAACTCACTAAA
CTGCCGTGTGTCATCTGTCCCTCACTCCATTGTTGTGTGCACAACGAATA
GAGGGACACACGCATGGAGCGGGTGCGTGGTTGGTAGGTCTGTAGTCAGG
GAACTCGACCGCGTGCTGCCGTTGCGTACGCTGGCCACGAGTTGCCATGA
CACCGGCCGCGGCAAGGCGTGAAGTTTTGCGCAGTAGTTCGATACCCCTA
GAGGAACAAAGTCGGCAGACACGTCATTTTGGGGGCTGTAGTGGGGTCAC
GAGGATACTGCGGCCAAGCCGCGCACGCATGTAGAACGACAATGACATGT
GGCTGTGTTGGACATATCAAAGATGGGTGGTAGAAGGTGCATATCCTCCT
GGGCTGCTGAGTGCTGGTGCTTTGCGCAAAGTATCCTGGCGGGGTAATCT
TGTTGTGACAAAGTGCCCAATCGTGGAAACGCCGAGAAATATATCCAGGG
TCCCCTCCCCCCCCCTACCCGGCCCCCTTATACTGCTGTACATGGCCATC
CTTCTTTATCACAGAGCCGATGCAAAAGCCTCTTTTTCTCTCTCTTGCAT
GCCACGGCGATTGCCCATCCGGTCGCAATAATCCGCTCTTTCCCTTCCAC
TACACCCCCGGGCGTGAAACAAAGGAGACACCGCCATGTCGGAAACGTCG
GCGGCTAAACTACATGCCACCGGAAGTTCCGCCGCGCCGTCAGCCGCCGC
CGCCGCCGCCGCCGCGACCAAGAGGAAGACCTTCAAGCGCGCCCTCAAGG
GGACCGTCGGCGTTGGCCTGGCCGCCGCTTCCGCGGCGCTCATAGCCCGC
TCCGACGACATCGGGGAGTGGTTGCAGTCCGTCGCGCCGCACGTTTTGCC
GCACACGGTGGTTGTGCCCGGCGGCGCGGACACCGCCGTCCTGGCGGACT
TCGTCCTCCGGGCCATCGCGGAGGCGAAGAGCTGCGTGCAGGAGGGGGTC
AACGTCTGCTTGGACGCTGAGGGTCGGGTGACGGCGCTATGTGAGTGCAT
AGACGAAAAAAAAGTAGCGTGCGCGGTGTAGTGCGTAGCAAGTGTTAGCT
TTGATGTTGCGAGGCGCTATTGCTACGTGAGTTGGTGGATCGAGGAAGAA
CGTCCTGTGGTGTGTGCTCCTGCTGCTCAAGTGCGCCGCAAGTGTTGCGA
AGTTTCGATGTTGTGAGGCGCTATTATATAGGTTCGTGGATCAACGGGAA
GCGCCTGCGGTGTGTGCTGTATGTCTCGTCGTGTTGTTGAGAAGTGTATC
AGGGAACACAAGAATGAATTCGCGGTTGAGCATAGACGATAATAACACTG
TCAGAATTTTATTAGCTGCTCGTCTCGCCTGCGAATTCGATACACCTCTT
GTATGTGTAACGCTCATGTTTTACCGAGACTGGAGACGGGAGTAAGCCTC
ACCATTTTGCTGTATTCTCGTCGACAGCGCCAGTTTGGACACGCGTCTCT
TCACTTCACCCTCTGGCCCTGCCTTGCTTACAAGATGCATTTTACCAAAA
GATCAGAGGGCTCCAAGCGACATTCGTATGACTCCGACTCCGTCGAAAGT
CCGCTAGCCACTCTCTTGGCTAGACTCCCCCGATCCGTTTGCAACACAAG
TTGGCACCCTCCTGCCGCTGCGCATGCTGGGCCGTGACAGTGATCTGGTG
TGCTGTTGCACTCACCATCGTCTCGATATCTTCAAAATGACCAAATGTTG
AGCGTTGACAGAAGGTCCATCTCCTCCCAATAGTCTACCTCTCTCCCCGC
TTCTTCTTGCCGTTCTCGCCGACACTCACTCACGATACGTCAACCAATCA
TCATTTTCGTCTTCGAACGCTCCATGTCCTCAGTAGTCGGCCGCCCTGAC
CTAAAACGACCGTCGACGTGCCCTCGTTCTTGACCCCGCCTCCTCCCCGC
GGCAGACACGTTTATTTCTCAGTGGTACCTGAGCCCCAGGCAGCACGTCG
TGGAGATGGCGTTGTCCATCCTAGTCCTGTCCCCGCTTGTCTACCTCTAC
TTCAAGCTCTGCCGAGCGCGGCTGAGGCTCAAGCGCGCGGCGGGGGCCTT
CGACGCGAAGAGACCAAGCCTCCTCATGAAGCTCTGGGGGGCGGGGCTGC
TCGGCCTTGTCGGAGCCGGAGCGTTCCTCAAGTTCACCAAGCAGGAGCTC
ATCTCGCACCCGGCGTACCTGTGGCAGCCCTGCCACGTCCACAGCCTCGT
CATGGGCCTGTGCGCTTTCGTGGAGACGGAGGGGTCGCTGTTGGTGATGC
ACGTGGCCACGACCCTGTGGTGGGGGCCGTTCCTGGCGTTCGTGGCGCCG
TCGCTGCCAACCGACCCCGTCGAAGTAAGGGGTGTTTTTTTTGTTGTTAT
TACAACACAACAAACCCATCTCTATCCCTGTTTGCTTGTTTAATTCGATT
GTAAGTGGCGGCAGGTGTTGTTTTGAAGAAGAATCTTGCTGCATCCAGGA
AAAGGCACCATGCGGCACGTCCGTGTGGTTCGACTCGGGGGAGAAATTGT
TTGAGAATGATGGAGAGACTTCGAGACTCTTGTGCAGAAGGAGAAAAGGG
GAATTGGGGGAACTGCTGTGACCTCCCAGACCTGATGATGACGAGCCTCA
GAGATACGCGGTCATGGAGCTCTAGCTAACTACCGCCCGCCGTGACACAA
GCAACTTTTCTCTCTTGAAACATTTCACGTCTGCACGAATGATAAGGAGA
AGTGTCCCGGCTGAATGGGAGGGTAGACAGAGGCGACAACACGATCGATT
TGTTTGCCGCTGGTGACTCTGCATGCATCTCAAGTGCGGCGGTGCCACTC
GCGGTCCACGCCATTCGAACCAAGCTTGATGGACTTGAACATCAACCTTT
CGTTTACGGGAGACTGTTTCGTTGGGCAGGGGGTCCTGGGTCTGCTTCAG
CGTCAGAAAGGGGCCAGACGGATGATGCCCCCTATATACCTCGCCTAATG
TTTCATTGTCTCTGATTTTTCAGGGTGTACCTTAGTGCATACGCTCCTCC
TCGGCCCATAAGGTGGCTCTTTCCTCGCACGTTGTTCGCCGTATCCGGCC
CGTTTCTGTGCCTTTCGTTAGCAGTTCAAGCGAAACCAGTACTCGCATCG
GCGCCAGGCTGACGTTTTGCGTTTCCCTCCGTTCCTTCCTATCGTGTGCT
ACGAAACCGATCAAACGTTCCATAACAACGACGACGACAACGACGATACA
GATTGCCATTTTCTGGGCGCAGCACGCCCTGATGCTCCTAGCTCCGTTCC
TTCGACTGACTGTGGGGACGAGGTGGTTGTACAGGTGAGGATGGGGGGGG
GGAGATGCAGACCTCAAGCCATGATAGCTCGCTAGTCCCGTAGCGCCTCC
CAGCAAGCAGCGTTTGTTTAGGAACGTGTCGTGGTGCCTGATCATCGCTT
GGAAACCCACCTCGAAAAAATCGAAAAAAAAAAACGCAGGGACTTCTGGT
GGAACTCGGTAGGCTTCGTGTTCTTGACTTGCTACCACTGGTGGTGGCTT
GCCCCAGTCAACCTCTTCACGGGGGTGAACGTGGCCACCATGTCGGTGCC
CCCAGACTCCCTCGAGATGTTCGGGAAGTACTATCGCCCGGTGTGGGGGT
TGATCTGCGGTCTCCTTCAGGTGGGCCGCCGTTTTTTTTTTCGTGTTTTT
CGTGTTTTTTATTTTGTGGTTTTTCTTCAAGCGTGTCTGGCTTGTTTAGT
AGATGCGTCTCGCGTGAGCCACTGTGGCATGCTCTCGCTTCTGGGGGTGG
CCGCTAACTGCTTTTGGCGACCATTTGGAGGGACGGGGGGACGTTGCATA
GGTCGTACCTACCTCACAATAGGTCGCACGTACCTTGCAAGATATAGGTG
GGGTGTACCACTGGTAGCCTTTTGTTTTTGCTGGCTAGAAATCAAATGGG
TTGGCGATAGTGATCTAGGAAAGGCTTTCGACACGTGGGGGGTGGGACCC
GTACTTTTTTGTACCTGCGCTCTGTGCCCTGCGTTTGTGGTTATTTCGCC
GTGGTGCCTTGCTGTGGCAAATCCCCCTCACTCCGAGTTTGTAGGCTTTC
AACTAGGCATTCCCACCGTTTTGTTAATACATTTGTGATGTGGTTGATGG
GCCTCGTCGCTGCGTGTGGTAACGACGACGTGACGGCGTGATTGTCAGTC
AGTCTACAGTCGCACCACAGAGGCTAGGCACAGCTGTCAGTAGAGGCCAC
GGTTCAGGAGATTGGTCGTACAAAACCTGTTCACCCCCCTCTTGCTTCCG
CCAGATGTCTTCTCGAACCTTGTTGTTGTTGTCTTCACGTTAAACGCCGT
TCCGATCCCTGCCAAGTACCTTCTAACATCCGCCCTGGTCTAACTGACGC
GGACGCCACCCTTTCGTGGTGATGAAACGTAACAATCATTGCGGCGTATC
TATCTACGTGCCAGTAAAGTTGATGAAGGGATAGACTTTCTTCCAACCCT
CTCTTGTTGAACCTGGTTGTGTTCTAAATTGAGCCCCCCCCCACCCTTCT
GCGTCACCCTTTCTCTTGCCGCGGTGTGTACGGTTCGATAGCTGGCCGCG
GTCGGGGTCATGTGCGTGCTGGCCAGTGTGTTCGGGCAGATGCCGTCGTC
GACAGCAGCAGCAGCAGCAGCAGCATCACCGACGCCATCGTCTGGTAGGG
CTAAGGGTAGTCCCCCGGCCATGACGGGGCCCCCGCAACGTACCAATGGG
AACGCCAGATCTAGCACCGGCAGCAGCAGCAGCTCTAGCAACAACGCCTG
CGGGGTCCGCAGAAGGGTTCCCGACGATGCGGTGGGGATTTCTCAGGAGA
AGGCAGTGTCGCTTGTGGACGGGAACTAAATAGCCGTAGGAGCTACGAGA
GCGCGCCGCGAGATTCTATAGGGCTGCGGGCCAACGATTTCTCGGCGGGG
AAGCTTCCTGGAAAATTCCGCCCAAGTAGGCCGGTTCGCTTGTGTGGACA
GCGGGCGTTGAACACGACGCTACGAGTATTCACTTTGGAGGGCCACGGGG
GGTGTTGTCGTTTGAGCGCGGGCCGGACCCGACAAAAGACATGGCGAGGA
AAAAGGAAGTAGCGAGAGCATATGAGGCGCTCACGAGCGAGGACGTTTCC
CGCGCATGCCTAGCGGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:372944..378512-

>mRNA_E-siliculosus-1a_M_contig96.17591.1 ID=mRNA_E-siliculosus-1a_M_contig96.17591.1|Name=mRNA_E-siliculosus-1a_M_contig96.17591.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2694bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:372944..378512- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGCCAAGATGTGCCAAGGAGACACCGCCATGTCGGAAACGTCGGCGG
CTAAACTACATGCCACCGGAAGTTCCGCCGCGCCGTCAGCCGCCGCCGCC
GCCGCCGCCGCGACCAAGAGGAAGACCTTCAAGCGCGCCCTCAAGGGGAC
CGTCGGCGTTGGCCTGGCCGCCGCTTCCGCGGCGCTCATAGCCCGCTCCG
ACGACATCGGGGAGTGGTTGCAGTCCGTCGCGCCGCACGTTTTGCCGCAC
ACGGTGGTTGTGCCCGGCGGCGCGGACACCGCCGTCCTGGCGGACTTCGT
CCTCCGGGCCATCGCGGAGGCGAAGAGCTGCGTGCAGGAGGGGGTCAACG
TCTGCTTGGACGCTGAGGGTCGGGTGACGGCGCTATGAGACACCGCCATG
TCGGAAACGTCGGCGGCTAAACTACATGCCACCGGAAGTTCCGCCGCGCC
GTCAGCCGCCGCCGCCGCCGCCGCCGCGACCAAGAGGAAGACCTTCAAGC
GCGCCCTCAAGGGGACCGTCGGCGTTGGCCTGGCCGCCGCTTCCGCGGCG
CTCATAGCCCGCTCCGACGACATCGGGGAGTGGTTGCAGTCCGTCGCGCC
GCACGTTTTGCCGCACACGGTGGTTGTGCCCGGCGGCGCGGACACCGCCG
TCCTGGCGGACTTCGTCCTCCGGGCCATCGCGGAGGCGAAGAGCTGCGTG
CAGGAGGGGGTCAACGTCTGCTTGGACGCTGAGGGTCGGGTGACGGCGCT
ATACACGTTTATTTCTCAGTGGTACCTGAGCCCCAGGCAGCACGTCGTGG
AGATGGCGTTGTCCATCCTAGTCCTGTCCCCGCTTGTCTACCTCTACTTC
AAGCTCTGCCGAGCGCGGCTGAGGCTCAAGCGCGCGGCGGGGGCCTTCGA
CGCGAAGAGACCAAGCCTCCTCATGAAGCTCTGGGGGGCGGGGCTGCTCG
GCCTTGTCGGAGCCGGAGCGTTCCTCAAGTTCACCAAGCAGGAGCTCATC
TCGCACCCGGCGTACCTGTGGCAGCCCTGCCACGTCCACAGCCTCGTCAT
GGGCCTGTGCGCTTTCGTGGAGACGGAGGGGTCGCTGTTGGTGATGCACG
TGGCCACGACCCTGTGGTGGGGGCCGTTCCTGGCGTTCGTGGCGCCGTCG
CTGCCAACCGACCCCGTCGAAACACGTTTATTTCTCAGTGGTACCTGAGC
CCCAGGCAGCACGTCGTGGAGATGGCGTTGTCCATCCTAGTCCTGTCCCC
GCTTGTCTACCTCTACTTCAAGCTCTGCCGAGCGCGGCTGAGGCTCAAGC
GCGCGGCGGGGGCCTTCGACGCGAAGAGACCAAGCCTCCTCATGAAGCTC
TGGGGGGCGGGGCTGCTCGGCCTTGTCGGAGCCGGAGCGTTCCTCAAGTT
CACCAAGCAGGAGCTCATCTCGCACCCGGCGTACCTGTGGCAGCCCTGCC
ACGTCCACAGCCTCGTCATGGGCCTGTGCGCTTTCGTGGAGACGGAGGGG
TCGCTGTTGGTGATGCACGTGGCCACGACCCTGTGGTGGGGGCCGTTCCT
GGCGTTCGTGGCGCCGTCGCTGCCAACCGACCCCGTCGAAATTGCCATTT
TCTGGGCGCAGCACGCCCTGATGCTCCTAGCTCCGTTCCTTCGACTGACT
GTGGGGACGAGGTGGTTGTACAGATTGCCATTTTCTGGGCGCAGCACGCC
CTGATGCTCCTAGCTCCGTTCCTTCGACTGACTGTGGGGACGAGGTGGTT
GTACAGGGACTTCTGGTGGAACTCGGTAGGCTTCGTGTTCTTGACTTGCT
ACCACTGGTGGTGGCTTGCCCCAGTCAACCTCTTCACGGGGGTGAACGTG
GCCACCATGTCGGTGCCCCCAGACTCCCTCGAGATGTTCGGGAAGTACTA
TCGCCCGGTGTGGGGGTTGATCTGCGGTCTCCTTCAGGGACTTCTGGTGG
AACTCGGTAGGCTTCGTGTTCTTGACTTGCTACCACTGGTGGTGGCTTGC
CCCAGTCAACCTCTTCACGGGGGTGAACGTGGCCACCATGTCGGTGCCCC
CAGACTCCCTCGAGATGTTCGGGAAGTACTATCGCCCGGTGTGGGGGTTG
ATCTGCGGTCTCCTTCAGCTGGCCGCGGTCGGGGTCATGTGCGTGCTGGC
CAGTGTGTTCGGGCAGATGCCGTCGTCGACAGCAGCAGCAGCAGCAGCAG
CATCACCGACGCCATCGTCTGGTAGGGCTAAGGGTAGTCCCCCGGCCATG
ACGGGGCCCCCGCAACGTACCAATGGGAACGCCAGATCTAGCACCGGCAG
CAGCAGCAGCTCTAGCAACAACGCCTGCGGGGTCCGCAGAAGGGTTCCCG
ACGATGCGGTGGGGATTTCTCAGGAGAAGGCAGTGTCGCTTGTGGACGGG
AACTAACTGGCCGCGGTCGGGGTCATGTGCGTGCTGGCCAGTGTGTTCGG
GCAGATGCCGTCGTCGACAGCAGCAGCAGCAGCAGCAGCATCACCGACGC
CATCGTCTGGTAGGGCTAAGGGTAGTCCCCCGGCCATGACGGGGCCCCCG
CAACGTACCAATGGGAACGCCAGATCTAGCACCGGCAGCAGCAGCAGCTC
TAGCAACAACGCCTGCGGGGTCCGCAGAAGGGTTCCCGACGATGCGGTGG
GGATTTCTCAGGAGAAGGCAGTGTCGCTTGTGGACGGGAACTAA
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