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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17561.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE) HSP 1 Score: 456 bits (1172), Expect = 9.180e-148 Identity = 313/353 (88.67%), Postives = 320/353 (90.65%), Query Frame = 2 Query: 263 MMSYLAVGNLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLALENGEGISSXXXXXXXXXX-----PRSVAKKAAPVDKENASAAVVAKPAGSRANKAASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNPDGSSTASSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXDKSQPLPQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRXXXXXXXXXXXXXXXXXXAQPPP 1306
MM+YLAVG+LLEDTITRSAQNQNGAD ELSWLRRRLDSERRDPRARGKLALEN +GISS XXXXXXXX PRSVAKKAAPVDKENASAA VAKPAGSRA+K PTGMSVLQLRRFLR IGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLN DGS+T SSAAGDAT PKRPLRESLSS XXXXXXXXXXXX QQVP VTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAK+QQ PAPAAAST+AESLPTPVTPPSLR XXXXXXXXXXXXXXX AQPPP
Sbjct: 1 MMNYLAVGDLLEDTITRSAQNQNGADGELSWLRRRLDSERRDPRARGKLALENVDGISSGGXXXXXXXXXXQTQPRSVAKKAAPVDKENASAAAVAKPAGSRASKV-PPTGMSVLQLRRFLRVIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNLDGSNTTSSAAGDATTPKRPLRESLSSXXXXXXXXXXXXXXXXXXXXXQQQVP-VTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKQQQQ-PAPAAASTKAESLPTPVTPPSLRPXXXXXXXXXXXXXXXRAAQPPP 350
BLAST of mRNA_E-siliculosus-1a_M_contig96.17561.1 vs. uniprot
Match: D8LQB0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB0_ECTSI) HSP 1 Score: 227 bits (578), Expect = 1.950e-69 Identity = 165/179 (92.18%), Postives = 165/179 (92.18%), Query Frame = 2 Query: 770 MLAVAESMLNPDGSSTASSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXDKSQPLPQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRXXXXXXXXXXXXXXXXXXAQPPP 1306
MLAVAESMLNPDGSST SSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXX QQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLR XXXXXXXXXXXXX AQ PP
Sbjct: 1 MLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXXXXXXXQQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRPPVXXXXXXXXXXXXXRAAQSPP 179
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 1044 |
| Model size | 1306 |
| Exons | 4 |
| Ec32 ortholog | Ec-26_005470.1 |
| Ec32 ortholog description | SAP domain |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936529.050064-CDS-E-siliculosus-1a_M_contig96:129233..129416 | 1622936529.050064-CDS-E-siliculosus-1a_M_contig96:129233..129416 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 129234..129416 - |
| 1696251118.2707393-CDS-E-siliculosus-1a_M_contig96:129233..129416 | 1696251118.2707393-CDS-E-siliculosus-1a_M_contig96:129233..129416 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 129234..129416 - |
| 1622936529.0681233-CDS-E-siliculosus-1a_M_contig96:129697..130077 | 1622936529.0681233-CDS-E-siliculosus-1a_M_contig96:129697..130077 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 129698..130077 - |
| 1696251118.2819405-CDS-E-siliculosus-1a_M_contig96:129697..130077 | 1696251118.2819405-CDS-E-siliculosus-1a_M_contig96:129697..130077 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 129698..130077 - |
| 1622936529.0938687-CDS-E-siliculosus-1a_M_contig96:130533..130714 | 1622936529.0938687-CDS-E-siliculosus-1a_M_contig96:130533..130714 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 130534..130714 - |
| 1696251118.2946284-CDS-E-siliculosus-1a_M_contig96:130533..130714 | 1696251118.2946284-CDS-E-siliculosus-1a_M_contig96:130533..130714 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 130534..130714 - |
| 1622936529.1109827-CDS-E-siliculosus-1a_M_contig96:131319..131619 | 1622936529.1109827-CDS-E-siliculosus-1a_M_contig96:131319..131619 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 131320..131619 - |
| 1696251118.3116992-CDS-E-siliculosus-1a_M_contig96:131319..131619 | 1696251118.3116992-CDS-E-siliculosus-1a_M_contig96:131319..131619 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 131320..131619 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936529.1270933-UTR-E-siliculosus-1a_M_contig96:131619..131881 | 1622936529.1270933-UTR-E-siliculosus-1a_M_contig96:131619..131881 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 131620..131881 - |
| 1696251118.3228486-UTR-E-siliculosus-1a_M_contig96:131619..131881 | 1696251118.3228486-UTR-E-siliculosus-1a_M_contig96:131619..131881 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 131620..131881 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17561.1 >prot_E-siliculosus-1a_M_contig96.17561.1 ID=prot_E-siliculosus-1a_M_contig96.17561.1|Name=mRNA_E-siliculosus-1a_M_contig96.17561.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=348bp
MMSYLAVGNLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLA
LENGEGISSSSSSSGSQPQPRSVAKKAAPVDKENASAAVVAKPAGSRANK
AASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDTA
RAQPRAAVECAGERRKTDAMLAVAESMLNPDGSSTASSAAGDATAPKRPL
RESLSSANNERSSRSSAGDSVDKSQPLPQQVPPVTPATSKLSGQEQDAVV
AKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQ
QQPAPAAASTEAESLPTPVTPPSLRPPVPSSPAPMPPASPPRAAQPPP back to topmRNA from alignment at E-siliculosus-1a_M_contig96:129234..131881- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17561.1 ID=mRNA_E-siliculosus-1a_M_contig96.17561.1|Name=mRNA_E-siliculosus-1a_M_contig96.17561.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2648bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:129234..131881- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACCACACCGCCGAGCGAGGGAGACCGAGAGAACCAGAGAGCGGGAGGGA
GATAAACATATTTGGCAGCCAGCATCGACTAATCACTGCTGAAAAGCCGA
CGATTCTCGTGCTGGTTTGTTCCTTGAGTCAAAAGCGGAGGAGTGTATCG
GCAGCAGCCAGCAGAAGAAGGGGAAAAAAATAAACCGTTTGTCGATTTTT
TGCCAAAGGAAAGGAGCGCGCGTTTCCAACGATACATCCATACCTCCACG
CAGCACAACAACATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGA
CACCATCACGCGCAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCA
GCTGGCTGCGCAGGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGA
GGCAAACTCGCCCTCGAGAACGGCGAAGGTATCAGCAGCAGCAGCAGCAG
CAGCGGCAGCCAGCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGCGCCCG
TGGACAAGGAGAATGCTTCTGCTGCTGTTGTGGCGAAACCCGCTGGGTCT
CGCGCGAACAAGGTGCGGTTTGTGTCCTCGTTTGTGTTGCCTTGATGTCA
ACTCGACGAGTCCATGTGTTTTGGCGCAATAAAAATAAAATAGATACAGC
GGTAGTATCGTCCCAGCCGGAGTCAGTTGGCGGTCTGCCCCGATGTGAAC
GATAGATCGCACTATCATTGACCGTGCCTCGCCCATAGTAGTGGTATGGG
TAAACAGGTGACGGAAAAATGAAGAGTCCTGCCGTGGTATGTTTTCTATC
TACACCACAGCAGTACTCGCCGCAGTAGGACACGTACGTGCTGCCGGCTC
CTTTCTCGGGGTATCTTTTGGCGCGAATTTCCGGTTGGCCTAGAGAACAA
TACAATGAGAGAGTCTCTATCCCGACCTCCTCCCCCCGATAACGTGCCGA
AAAGCGGGGCTTATTTCCTGTGTTGCTGCAGTAAGCACGTCTTTGCTCGG
GCCCGCTCTGCCGCGTTCGCAGCAGTACCAGCAGCACACAACTTAGCCCA
TAACAGCAAGATGCACACACTTGGGCGAAAACAGCCGCAAGGCCATTCTT
GGTTAGTGAAGTCTATGTCCCGTTGGACCATAATCATTTCGCCCCCTCCC
CTACACTCCTCTGGCAGGCGGCGTCTCCCACGGGCATGAGCGTCCTTCAG
CTACGGCGCTTCCTGCGGGCCATCGGGCAGCCCACGTCGGGCCTGAAGCC
GGTCCTCTCCGCCCGCCTTGAGAAGGCCGTAGCCTCGGGCGCCGTGAAGA
CTTTCGTCGACACCGCAAGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGGT
GAGCGAGCGCACGTATTTCCGTGTGCGCCTTTACTTGTGTTTTGTGTATT
TTGGTACGTATGTAGCATCGATGGCGAACTGGGTGCCCAGTGATACAGCA
CGTCAGTCTCTTCAACAAGTGCTGCGGGACGCAGATTCGTTTTCGTTTTT
GTGTCCGCCGGCTCCCCCGTCAAGGAGAGGTGTGCATGCGTGTGTGGGAT
GGCCAAAGGTGCTGCTGTTGCTGCTGTGTGCTATTTAAATACTACGTGGT
GAAACACTAGTTACTGTTGCTGTGAAAAACTGCAGGTACTGAGTAGCTTG
CTATTTAATAAAATAACCAAGCAAGTACGACCGACCCTCATTGCGTTCGT
TGTTTTTAGAGGCACGCCTACGGAAACATTCTGAAGGCACCACAACCTCC
CCCTACCAATGCGTCTCTCAACGATGCCTATGCCGGACGCACTCCCTCGC
GCAGCTGGTGAGCGTCGCAAGACCGATGCCATGTTGGCGGTGGCCGAGTC
TATGCTCAACCCGGACGGCAGCAGCACCGCTTCTTCCGCTGCCGGCGACG
CGACGGCGCCGAAGAGGCCGCTCCGCGAATCGCTGTCCAGCGCCAACAAC
GAGCGCAGCTCCCGGTCTTCGGCCGGCGACAGCGTCGACAAGTCGCAGCC
GCTTCCGCAGCAGGTGCCGCCGGTGACACCGGCGACCTCCAAGCTGTCGG
GGCAGGAGCAGGACGCGGTCGTTGCGAAGATTCGGTCTGCGGCGAAGAGG
TCTGCGTCTCCGGAGAAGAAGCTTCCGTACCAGGACGACGACACGCCCAA
CACGAAGGGCGCTCGCCTCAAGAAGGAGATGGAGGTGTGGTTCGGTGCAA
AGTGGGTCGATTGATTGGGAACTCGGGGGTCTGACGATCGAATGATGAGT
GTTCTGCTAGTGGTTGAGCAAATGTCCCAGAACTTGTGTGCTAGCAACTA
CGGATGCGGAAAGCAAATCATTGCAGATTCATTGTGCGGGCTGTGTTAGT
AGGACTGTGAGAAATACTTGCCCTGTCGTGGCTTCACAGAAAGGCGTTCA
CAATCGTGGTGTGATGTACCCTCCCTTGCCCTCGCCCTCTCCTCTACCCT
TTCCCCACCCCTCAGGACCGCCTTGCCAGGCAGAAAGCGGCCAAGAAGCA
GCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGACCGAGGCCGAGTCGCTCC
CGACGCCCGTCACCCCGCCGTCGCTCCGCCCCCCGGTGCCCTCCAGCCCG
GCCCCGATGCCCCCGGCCTCGCCGCCCCGCGCCGCGCAGCCCCCCCCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:129234..131881- >mRNA_E-siliculosus-1a_M_contig96.17561.1 ID=mRNA_E-siliculosus-1a_M_contig96.17561.1|Name=mRNA_E-siliculosus-1a_M_contig96.17561.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2088bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:129234..131881- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGACACCATCACGCG
CAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGCAAACTCGCC
CTCGAGAACGGCGAAGGTATCAGCAGCAGCAGCAGCAGCAGCGGCAGCCA
GCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGCGCCCGTGGACAAGGAGA
ATGCTTCTGCTGCTGTTGTGGCGAAACCCGCTGGGTCTCGCGCGAACAAG
ATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGACACCATCACGCG
CAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGCAAACTCGCC
CTCGAGAACGGCGAAGGTATCAGCAGCAGCAGCAGCAGCAGCGGCAGCCA
GCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGCGCCCGTGGACAAGGAGA
ATGCTTCTGCTGCTGTTGTGGCGAAACCCGCTGGGTCTCGCGCGAACAAG
GCGGCGTCTCCCACGGGCATGAGCGTCCTTCAGCTACGGCGCTTCCTGCG
GGCCATCGGGCAGCCCACGTCGGGCCTGAAGCCGGTCCTCTCCGCCCGCC
TTGAGAAGGCCGTAGCCTCGGGCGCCGTGAAGACTTTCGTCGACACCGCA
AGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGGCGGCGTCTCCCACGGGCA
TGAGCGTCCTTCAGCTACGGCGCTTCCTGCGGGCCATCGGGCAGCCCACG
TCGGGCCTGAAGCCGGTCCTCTCCGCCCGCCTTGAGAAGGCCGTAGCCTC
GGGCGCCGTGAAGACTTTCGTCGACACCGCAAGGGCGCAGCCGCGCGCAG
CGGTTGAGTGCGCTGGTGAGCGTCGCAAGACCGATGCCATGTTGGCGGTG
GCCGAGTCTATGCTCAACCCGGACGGCAGCAGCACCGCTTCTTCCGCTGC
CGGCGACGCGACGGCGCCGAAGAGGCCGCTCCGCGAATCGCTGTCCAGCG
CCAACAACGAGCGCAGCTCCCGGTCTTCGGCCGGCGACAGCGTCGACAAG
TCGCAGCCGCTTCCGCAGCAGGTGCCGCCGGTGACACCGGCGACCTCCAA
GCTGTCGGGGCAGGAGCAGGACGCGGTCGTTGCGAAGATTCGGTCTGCGG
CGAAGAGGTCTGCGTCTCCGGAGAAGAAGCTTCCGTACCAGGACGACGAC
ACGCCCAACACGAAGGGCGCTCGCCTCAAGAAGGAGATGGAGCTGGTGAG
CGTCGCAAGACCGATGCCATGTTGGCGGTGGCCGAGTCTATGCTCAACCC
GGACGGCAGCAGCACCGCTTCTTCCGCTGCCGGCGACGCGACGGCGCCGA
AGAGGCCGCTCCGCGAATCGCTGTCCAGCGCCAACAACGAGCGCAGCTCC
CGGTCTTCGGCCGGCGACAGCGTCGACAAGTCGCAGCCGCTTCCGCAGCA
GGTGCCGCCGGTGACACCGGCGACCTCCAAGCTGTCGGGGCAGGAGCAGG
ACGCGGTCGTTGCGAAGATTCGGTCTGCGGCGAAGAGGTCTGCGTCTCCG
GAGAAGAAGCTTCCGTACCAGGACGACGACACGCCCAACACGAAGGGCGC
TCGCCTCAAGAAGGAGATGGAGGACCGCCTTGCCAGGCAGAAAGCGGCCA
AGAAGCAGCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGACCGAGGCCGAG
TCGCTCCCGACGCCCGTCACCCCGCCGTCGCTCCGCCCCCCGGTGCCCTC
CAGCCCGGCCCCGATGCCCCCGGCCTCGCCGCCCCGCGCCGCGCAGCCCC
CCCCCGACCGCCTTGCCAGGCAGAAAGCGGCCAAGAAGCAGCAGCAGCAG
CCCGCCCCGGCCGCCGCTTCGACCGAGGCCGAGTCGCTCCCGACGCCCGT
CACCCCGCCGTCGCTCCGCCCCCCGGTGCCCTCCAGCCCGGCCCCGATGC
CCCCGGCCTCGCCGCCCCGCGCCGCGCAGCCCCCCCCC back to top
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