mRNA_E-siliculosus-1a_M_contig96.17561.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17561.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17561.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17561.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 456 bits (1172), Expect = 9.180e-148
Identity = 313/353 (88.67%), Postives = 320/353 (90.65%), Query Frame = 2 
Query:  263 MMSYLAVGNLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLALENGEGISSXXXXXXXXXX-----PRSVAKKAAPVDKENASAAVVAKPAGSRANKAASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNPDGSSTASSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXDKSQPLPQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRXXXXXXXXXXXXXXXXXXAQPPP 1306
            MM+YLAVG+LLEDTITRSAQNQNGAD ELSWLRRRLDSERRDPRARGKLALEN +GISS  XXXXXXXX     PRSVAKKAAPVDKENASAA VAKPAGSRA+K   PTGMSVLQLRRFLR IGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLN DGS+T SSAAGDAT PKRPLRESLSS   XXXXXXXXXXXX       QQVP VTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAK+QQ  PAPAAAST+AESLPTPVTPPSLR XXXXXXXXXXXXXXX  AQPPP
Sbjct:    1 MMNYLAVGDLLEDTITRSAQNQNGADGELSWLRRRLDSERRDPRARGKLALENVDGISSGGXXXXXXXXXXQTQPRSVAKKAAPVDKENASAAAVAKPAGSRASKV-PPTGMSVLQLRRFLRVIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNLDGSNTTSSAAGDATTPKRPLRESLSSXXXXXXXXXXXXXXXXXXXXXQQQVP-VTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKQQQQ-PAPAAASTKAESLPTPVTPPSLRPXXXXXXXXXXXXXXXRAAQPPP 350
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17561.1 vs. uniprot
Match: D8LQB0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB0_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.950e-69
Identity = 165/179 (92.18%), Postives = 165/179 (92.18%), Query Frame = 2 
Query:  770 MLAVAESMLNPDGSSTASSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXDKSQPLPQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRXXXXXXXXXXXXXXXXXXAQPPP 1306
            MLAVAESMLNPDGSST SSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXX       QQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLR   XXXXXXXXXXXXX  AQ PP
Sbjct:    1 MLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXXXXXXXQQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRPPVXXXXXXXXXXXXXRAAQSPP 179
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3Q6_9PHAE9.180e-14888.67SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQB0_ECTSI1.950e-6992.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:129234..131881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1044
Model size1306
Exons4
Ec32 orthologEc-26_005470.1
Ec32 ortholog descriptionSAP domain
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17561.1prot_E-siliculosus-1a_M_contig96.17561.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 129234..131619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.050064-CDS-E-siliculosus-1a_M_contig96:129233..1294161622936529.050064-CDS-E-siliculosus-1a_M_contig96:129233..129416Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 129234..129416 -
1696251118.2707393-CDS-E-siliculosus-1a_M_contig96:129233..1294161696251118.2707393-CDS-E-siliculosus-1a_M_contig96:129233..129416Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 129234..129416 -
1622936529.0681233-CDS-E-siliculosus-1a_M_contig96:129697..1300771622936529.0681233-CDS-E-siliculosus-1a_M_contig96:129697..130077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 129698..130077 -
1696251118.2819405-CDS-E-siliculosus-1a_M_contig96:129697..1300771696251118.2819405-CDS-E-siliculosus-1a_M_contig96:129697..130077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 129698..130077 -
1622936529.0938687-CDS-E-siliculosus-1a_M_contig96:130533..1307141622936529.0938687-CDS-E-siliculosus-1a_M_contig96:130533..130714Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 130534..130714 -
1696251118.2946284-CDS-E-siliculosus-1a_M_contig96:130533..1307141696251118.2946284-CDS-E-siliculosus-1a_M_contig96:130533..130714Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 130534..130714 -
1622936529.1109827-CDS-E-siliculosus-1a_M_contig96:131319..1316191622936529.1109827-CDS-E-siliculosus-1a_M_contig96:131319..131619Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 131320..131619 -
1696251118.3116992-CDS-E-siliculosus-1a_M_contig96:131319..1316191696251118.3116992-CDS-E-siliculosus-1a_M_contig96:131319..131619Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 131320..131619 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.1270933-UTR-E-siliculosus-1a_M_contig96:131619..1318811622936529.1270933-UTR-E-siliculosus-1a_M_contig96:131619..131881Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 131620..131881 -
1696251118.3228486-UTR-E-siliculosus-1a_M_contig96:131619..1318811696251118.3228486-UTR-E-siliculosus-1a_M_contig96:131619..131881Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 131620..131881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17561.1

>prot_E-siliculosus-1a_M_contig96.17561.1 ID=prot_E-siliculosus-1a_M_contig96.17561.1|Name=mRNA_E-siliculosus-1a_M_contig96.17561.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=348bp
MMSYLAVGNLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLA
LENGEGISSSSSSSGSQPQPRSVAKKAAPVDKENASAAVVAKPAGSRANK
AASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDTA
RAQPRAAVECAGERRKTDAMLAVAESMLNPDGSSTASSAAGDATAPKRPL
RESLSSANNERSSRSSAGDSVDKSQPLPQQVPPVTPATSKLSGQEQDAVV
AKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQ
QQPAPAAASTEAESLPTPVTPPSLRPPVPSSPAPMPPASPPRAAQPPP
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mRNA from alignment at E-siliculosus-1a_M_contig96:129234..131881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17561.1 ID=mRNA_E-siliculosus-1a_M_contig96.17561.1|Name=mRNA_E-siliculosus-1a_M_contig96.17561.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2648bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:129234..131881- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACCACACCGCCGAGCGAGGGAGACCGAGAGAACCAGAGAGCGGGAGGGA
GATAAACATATTTGGCAGCCAGCATCGACTAATCACTGCTGAAAAGCCGA
CGATTCTCGTGCTGGTTTGTTCCTTGAGTCAAAAGCGGAGGAGTGTATCG
GCAGCAGCCAGCAGAAGAAGGGGAAAAAAATAAACCGTTTGTCGATTTTT
TGCCAAAGGAAAGGAGCGCGCGTTTCCAACGATACATCCATACCTCCACG
CAGCACAACAACATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGA
CACCATCACGCGCAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCA
GCTGGCTGCGCAGGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGA
GGCAAACTCGCCCTCGAGAACGGCGAAGGTATCAGCAGCAGCAGCAGCAG
CAGCGGCAGCCAGCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGCGCCCG
TGGACAAGGAGAATGCTTCTGCTGCTGTTGTGGCGAAACCCGCTGGGTCT
CGCGCGAACAAGGTGCGGTTTGTGTCCTCGTTTGTGTTGCCTTGATGTCA
ACTCGACGAGTCCATGTGTTTTGGCGCAATAAAAATAAAATAGATACAGC
GGTAGTATCGTCCCAGCCGGAGTCAGTTGGCGGTCTGCCCCGATGTGAAC
GATAGATCGCACTATCATTGACCGTGCCTCGCCCATAGTAGTGGTATGGG
TAAACAGGTGACGGAAAAATGAAGAGTCCTGCCGTGGTATGTTTTCTATC
TACACCACAGCAGTACTCGCCGCAGTAGGACACGTACGTGCTGCCGGCTC
CTTTCTCGGGGTATCTTTTGGCGCGAATTTCCGGTTGGCCTAGAGAACAA
TACAATGAGAGAGTCTCTATCCCGACCTCCTCCCCCCGATAACGTGCCGA
AAAGCGGGGCTTATTTCCTGTGTTGCTGCAGTAAGCACGTCTTTGCTCGG
GCCCGCTCTGCCGCGTTCGCAGCAGTACCAGCAGCACACAACTTAGCCCA
TAACAGCAAGATGCACACACTTGGGCGAAAACAGCCGCAAGGCCATTCTT
GGTTAGTGAAGTCTATGTCCCGTTGGACCATAATCATTTCGCCCCCTCCC
CTACACTCCTCTGGCAGGCGGCGTCTCCCACGGGCATGAGCGTCCTTCAG
CTACGGCGCTTCCTGCGGGCCATCGGGCAGCCCACGTCGGGCCTGAAGCC
GGTCCTCTCCGCCCGCCTTGAGAAGGCCGTAGCCTCGGGCGCCGTGAAGA
CTTTCGTCGACACCGCAAGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGGT
GAGCGAGCGCACGTATTTCCGTGTGCGCCTTTACTTGTGTTTTGTGTATT
TTGGTACGTATGTAGCATCGATGGCGAACTGGGTGCCCAGTGATACAGCA
CGTCAGTCTCTTCAACAAGTGCTGCGGGACGCAGATTCGTTTTCGTTTTT
GTGTCCGCCGGCTCCCCCGTCAAGGAGAGGTGTGCATGCGTGTGTGGGAT
GGCCAAAGGTGCTGCTGTTGCTGCTGTGTGCTATTTAAATACTACGTGGT
GAAACACTAGTTACTGTTGCTGTGAAAAACTGCAGGTACTGAGTAGCTTG
CTATTTAATAAAATAACCAAGCAAGTACGACCGACCCTCATTGCGTTCGT
TGTTTTTAGAGGCACGCCTACGGAAACATTCTGAAGGCACCACAACCTCC
CCCTACCAATGCGTCTCTCAACGATGCCTATGCCGGACGCACTCCCTCGC
GCAGCTGGTGAGCGTCGCAAGACCGATGCCATGTTGGCGGTGGCCGAGTC
TATGCTCAACCCGGACGGCAGCAGCACCGCTTCTTCCGCTGCCGGCGACG
CGACGGCGCCGAAGAGGCCGCTCCGCGAATCGCTGTCCAGCGCCAACAAC
GAGCGCAGCTCCCGGTCTTCGGCCGGCGACAGCGTCGACAAGTCGCAGCC
GCTTCCGCAGCAGGTGCCGCCGGTGACACCGGCGACCTCCAAGCTGTCGG
GGCAGGAGCAGGACGCGGTCGTTGCGAAGATTCGGTCTGCGGCGAAGAGG
TCTGCGTCTCCGGAGAAGAAGCTTCCGTACCAGGACGACGACACGCCCAA
CACGAAGGGCGCTCGCCTCAAGAAGGAGATGGAGGTGTGGTTCGGTGCAA
AGTGGGTCGATTGATTGGGAACTCGGGGGTCTGACGATCGAATGATGAGT
GTTCTGCTAGTGGTTGAGCAAATGTCCCAGAACTTGTGTGCTAGCAACTA
CGGATGCGGAAAGCAAATCATTGCAGATTCATTGTGCGGGCTGTGTTAGT
AGGACTGTGAGAAATACTTGCCCTGTCGTGGCTTCACAGAAAGGCGTTCA
CAATCGTGGTGTGATGTACCCTCCCTTGCCCTCGCCCTCTCCTCTACCCT
TTCCCCACCCCTCAGGACCGCCTTGCCAGGCAGAAAGCGGCCAAGAAGCA
GCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGACCGAGGCCGAGTCGCTCC
CGACGCCCGTCACCCCGCCGTCGCTCCGCCCCCCGGTGCCCTCCAGCCCG
GCCCCGATGCCCCCGGCCTCGCCGCCCCGCGCCGCGCAGCCCCCCCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:129234..131881-

>mRNA_E-siliculosus-1a_M_contig96.17561.1 ID=mRNA_E-siliculosus-1a_M_contig96.17561.1|Name=mRNA_E-siliculosus-1a_M_contig96.17561.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2088bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:129234..131881- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGACACCATCACGCG
CAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGCAAACTCGCC
CTCGAGAACGGCGAAGGTATCAGCAGCAGCAGCAGCAGCAGCGGCAGCCA
GCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGCGCCCGTGGACAAGGAGA
ATGCTTCTGCTGCTGTTGTGGCGAAACCCGCTGGGTCTCGCGCGAACAAG
ATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGACACCATCACGCG
CAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGCAAACTCGCC
CTCGAGAACGGCGAAGGTATCAGCAGCAGCAGCAGCAGCAGCGGCAGCCA
GCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGCGCCCGTGGACAAGGAGA
ATGCTTCTGCTGCTGTTGTGGCGAAACCCGCTGGGTCTCGCGCGAACAAG
GCGGCGTCTCCCACGGGCATGAGCGTCCTTCAGCTACGGCGCTTCCTGCG
GGCCATCGGGCAGCCCACGTCGGGCCTGAAGCCGGTCCTCTCCGCCCGCC
TTGAGAAGGCCGTAGCCTCGGGCGCCGTGAAGACTTTCGTCGACACCGCA
AGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGGCGGCGTCTCCCACGGGCA
TGAGCGTCCTTCAGCTACGGCGCTTCCTGCGGGCCATCGGGCAGCCCACG
TCGGGCCTGAAGCCGGTCCTCTCCGCCCGCCTTGAGAAGGCCGTAGCCTC
GGGCGCCGTGAAGACTTTCGTCGACACCGCAAGGGCGCAGCCGCGCGCAG
CGGTTGAGTGCGCTGGTGAGCGTCGCAAGACCGATGCCATGTTGGCGGTG
GCCGAGTCTATGCTCAACCCGGACGGCAGCAGCACCGCTTCTTCCGCTGC
CGGCGACGCGACGGCGCCGAAGAGGCCGCTCCGCGAATCGCTGTCCAGCG
CCAACAACGAGCGCAGCTCCCGGTCTTCGGCCGGCGACAGCGTCGACAAG
TCGCAGCCGCTTCCGCAGCAGGTGCCGCCGGTGACACCGGCGACCTCCAA
GCTGTCGGGGCAGGAGCAGGACGCGGTCGTTGCGAAGATTCGGTCTGCGG
CGAAGAGGTCTGCGTCTCCGGAGAAGAAGCTTCCGTACCAGGACGACGAC
ACGCCCAACACGAAGGGCGCTCGCCTCAAGAAGGAGATGGAGCTGGTGAG
CGTCGCAAGACCGATGCCATGTTGGCGGTGGCCGAGTCTATGCTCAACCC
GGACGGCAGCAGCACCGCTTCTTCCGCTGCCGGCGACGCGACGGCGCCGA
AGAGGCCGCTCCGCGAATCGCTGTCCAGCGCCAACAACGAGCGCAGCTCC
CGGTCTTCGGCCGGCGACAGCGTCGACAAGTCGCAGCCGCTTCCGCAGCA
GGTGCCGCCGGTGACACCGGCGACCTCCAAGCTGTCGGGGCAGGAGCAGG
ACGCGGTCGTTGCGAAGATTCGGTCTGCGGCGAAGAGGTCTGCGTCTCCG
GAGAAGAAGCTTCCGTACCAGGACGACGACACGCCCAACACGAAGGGCGC
TCGCCTCAAGAAGGAGATGGAGGACCGCCTTGCCAGGCAGAAAGCGGCCA
AGAAGCAGCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGACCGAGGCCGAG
TCGCTCCCGACGCCCGTCACCCCGCCGTCGCTCCGCCCCCCGGTGCCCTC
CAGCCCGGCCCCGATGCCCCCGGCCTCGCCGCCCCGCGCCGCGCAGCCCC
CCCCCGACCGCCTTGCCAGGCAGAAAGCGGCCAAGAAGCAGCAGCAGCAG
CCCGCCCCGGCCGCCGCTTCGACCGAGGCCGAGTCGCTCCCGACGCCCGT
CACCCCGCCGTCGCTCCGCCCCCCGGTGCCCTCCAGCCCGGCCCCGATGC
CCCCGGCCTCGCCGCCCCGCGCCGCGCAGCCCCCCCCC
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