mRNA_E-siliculosus-1a_M_contig96.17560.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: D8LQB1_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB1_ECTSI) HSP 1 Score: 592 bits (1525), Expect = 9.860e-196 Identity = 568/655 (86.72%), Postives = 569/655 (86.87%), Query Frame = 1 Query: 79 MASKTSDQAVGGDAAAVPASPTGSAPVPTAKDSAAAAA-VNAVTDGVAALSVGGSGVAAAV-AAAPPSEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKPPPSANPEVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXXXXXQKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAAADEARRDAQAKAELKARXXXXXXXXEREAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPVKPPTPPRVAVKPPPTPPRPGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRNKKTKGAASTPSPALAXXXXXXXXXXXXXXXXXXXP--TPVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 2031
MASK S QA+GGDAAAVPASPTGSAPVPTAKDSAAAAA VNAVTDGVAALSVGGSGV A APPSEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKPPPSANPEVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXX QKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAA DEARRDAQAKAELKAR XXXX EREAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRK XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWT XXXX IRNKKTKG ASTPS XXXXXXXXXXXXXXXXXXX TPVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK
Sbjct: 1 MASKASGQAIGGDAAAVPASPTGSAPVPTAKDSAAAAAAVNAVTDGVAALSVGGSGVXXXXXATAPPSEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKPPPSANPEVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXX----QKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAATDEARRDAQAKAELKAREAAXXXXAEREAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRKAEEKKRAERRAALXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------PGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWTPSKSSGSAAEVRQLALAKKKEEIXXXXEEIRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXXVATPVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 630
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE) HSP 1 Score: 536 bits (1381), Expect = 6.040e-169 Identity = 557/700 (79.57%), Postives = 561/700 (80.14%), Query Frame = 1 Query: 40 PPEPEGSAPRP------------------ADMASKTSDQAVGGDAAAVPASPTGSAPVPTAKDSAAAAAVNAVTDGVAALSVGGSGVAAAVAAAPPSEKP-----------------TSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKPPPSANPEVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXXXXXQKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAAADEARRDAQAKAELKARXXXXXXXXEREAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKP-VKPPTPPRVAVKPPPTPPRPGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRNKKTKGAASTPSPALAXXXXXXXXXXXXXXXXXXXPTPVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 2031
PP P+G+AP+P ADMASK SDQAVGGDAAAVPASPTGSAPVP AKDSAAAAAVNAVTDGVAA SVGGS VA TSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVK PPSAN E+PSPTGSTTQDAFAKFRAMDSNSKKASGSV SFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXX QKLDFSGSKASNN KRGGDA GSXX XXXXXXXXXXXXXXXXXXX KARSLAEK AADE XXXXXXXX AKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKPPTPPRVAVKP TPPRPGNKGQAQAPXXXXXXXX AAAAPQVPSASSWT IRNKKTKG ASTPS XXXXXXXXXXXXXXXXXXX VKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK
Sbjct: 349 PPPPKGNAPQPSXTTXXXXXXXXXXXXXXADMASKASDQAVGGDAAAVPASPTGSAPVPIAKDSAAAAAVNAVTDGVAARSVGGSVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKQPPSANSEIPSPTGSTTQDAFAKFRAMDSNSKKASGSVHSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXXP--QKLDFSGSKASNNINTPTSSSTSSL-KRGGDAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXKARSLAEKEAADEXXXXXXXXXXXXXXXXXXXXXXXXXAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVKPPTPPRVAVKPXXTPPRPGNKGQAQAPXXXXXXXXXAAAAPQVPSASSWTPSKSSGSAAEVRQLALAKKKEEIAKRMEEIRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXXXXVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 1045
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: D7G3R5_ECTSI (INCENP_ARK-bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R5_ECTSI) HSP 1 Score: 115 bits (289), Expect = 4.330e-26 Identity = 46/80 (57.50%), Postives = 65/80 (81.25%), Query Frame = 1 Query: 1786 DKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGF 2025
+ + +P+WA + +A L++QYGG P+NP+KIF +F+TC+LE IF+T K+KWDR S+G+W +DRLTIAEKLAY RAMG+
Sbjct: 38 ESTFVPEWATNEGIAAALERQYGGDKPINPNKIFVDFYTCSLETIFDTNKKKWDRKSTGDWMSDRLTIAEKLAYDRAMGY 117
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: A0A7S2M2L9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M2L9_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.140e-17 Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 Query: 1789 KSAIPDWARGKALAKILDKQYG-GPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDR-SSSGNWHTDRLTIAEKLAYQRAMGFDK 2031
K +P+WA+ L + L++Q+ GPN L+PDKIF E TCNLE IF+ KK ++ R +SSGNW D +TIAEKL Y+R MG+ K
Sbjct: 227 KKKVPEWAQRHNLHRALERQFADGPNRLDPDKIFGEVLTCNLEEIFDKKKSRYQRRTSSGNWTKDHVTIAEKLTYKRTMGYQK 309
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: A0A835ZCU2_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 6.160e-17 Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 1 Query: 1798 IPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKW-DRSSSGNWHTDRLTIAEKLA 2004
IP WARGK L L++Q+GG P+NPD IF EFFTC+L+HIF+T+K+++ RSSSGNW D+LT+ E+LA
Sbjct: 460 IPAWARGKQLEAALERQFGGSAPINPDTIFAEFFTCDLQHIFDTRKKRYVTRSSSGNWLQDKLTLPERLA 529
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: A0A1E7FGC0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGC0_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.100e-15 Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 1789 KSAIPDWARGKALAKILDKQYGG---PNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRS--SSGNWHTDRLTIAEKLAYQRAMGF 2025
K IP WA L L+KQY G ++PD+IFPE +C+LE IF TKK K RS SSGNW D++T+AEKL Y+R MGF
Sbjct: 30 KKKIPTWALRANLYPALEKQYNGHIGSRKVDPDEIFPEVQSCDLEAIFGTKKAKAYRSRASSGNWAQDKVTVAEKLVYKREMGF 113
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: A0A7S2S9K2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9K2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.320e-14 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 1789 KSAIPDWARGKALAKILDKQY-GGPNPLNPDKIFPEFFTCNLEHIFNTKKQKW-DRSSSGNWHTDRLTIAEKLAYQRAMGFDK 2031
K +P+WA L K L++Q+ GP+ ++PD++FP+ TC+LE IF+ KK+++ R+SS NW D ++ AE L Y+R MGFDK
Sbjct: 166 KKKVPEWAMRSNLLKALERQFLDGPDRIDPDQLFPQVTTCDLEAIFDQKKKRYATRTSSANWAKDSVSAAETLVYKRTMGFDK 248
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: K0SBK4_THAOC (SAP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBK4_THAOC) HSP 1 Score: 88.6 bits (218), Expect = 4.000e-14 Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 1789 KSAIPDWARGKALAKILDKQYG-GPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDR-SSSGNWHTDRLTIAEKLAYQRAM 2019
K +P WA+ L + L+KQY GPN L+PDKIF E +CNL+ IF+ KK ++ R +SSGNW D +T EKLAY+RA+
Sbjct: 621 KKTVPQWAQKSNLMRALEKQYADGPNRLDPDKIFGEVLSCNLDEIFDKKKARYQRRTSSGNWSQDHVTAKEKLAYKRAV 699
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: D8LJ56_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 5.330e-14 Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 1798 IPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDR-SSSGNWHTDRLTIAEKLAYQRAMGFDK 2031
IP WA+G AL++ L +QY ++PDKIFPE FTC+LE IF K ++ R SS NW DR+T E L Y+R++G K
Sbjct: 195 IPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVNKSRYHRRGSSANWTPDRVTPQEVLTYKRSVGIAK 273
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Match: A0A7S3Y2K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2K4_HETAK) HSP 1 Score: 80.1 bits (196), Expect = 6.830e-13 Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 1789 KSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNT----KKQKWD-RSSSGNWHTDRLTIAEKLAYQRAMGF 2025
K IP WARG L + L +Q+ + ++PD IFPE TC LE IF KK K+ R SSGNW D+LT+ EK+ YQRAMGF
Sbjct: 151 KKNIPSWARGAELKEQLCRQF--TDLVDPDSIFPEVSTCVLEDIFQEAAPKKKAKYKARKSSGNWQRDKLTLVEKMDYQRAMGF 232 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17560.1 >prot_E-siliculosus-1a_M_contig96.17560.1 ID=prot_E-siliculosus-1a_M_contig96.17560.1|Name=mRNA_E-siliculosus-1a_M_contig96.17560.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=652bp MASKTSDQAVGGDAAAVPASPTGSAPVPTAKDSAAAAAVNAVTDGVAALSback to top mRNA from alignment at E-siliculosus-1a_M_contig96:122682..129233- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17560.1 ID=mRNA_E-siliculosus-1a_M_contig96.17560.1|Name=mRNA_E-siliculosus-1a_M_contig96.17560.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6552bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:122682..129233- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:122682..129233- >mRNA_E-siliculosus-1a_M_contig96.17560.1 ID=mRNA_E-siliculosus-1a_M_contig96.17560.1|Name=mRNA_E-siliculosus-1a_M_contig96.17560.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3912bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:122682..129233- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |