mRNA_E-siliculosus-1a_M_contig96.17554.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: A0A6H5LNG1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNG1_9PHAE) HSP 1 Score: 534 bits (1375), Expect = 1.210e-182 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 2 Query: 515 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSLEPGTSN 1303
MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSLEPGTSN
Sbjct: 1 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSLEPGTSN 263
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: D7G3N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N5_ECTSI) HSP 1 Score: 465 bits (1196), Expect = 4.670e-162 Identity = 229/230 (99.57%), Postives = 230/230 (100.00%), Query Frame = 2 Query: 515 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAE 1204
MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPG+SRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAE
Sbjct: 1 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGISRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAE 230
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: A0A835Z323_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z323_9STRA) HSP 1 Score: 446 bits (1148), Expect = 2.320e-151 Identity = 211/260 (81.15%), Postives = 241/260 (92.69%), Query Frame = 2 Query: 515 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSLEPG 1294
MSSM+LS Q+NE+LFVGFNQD GCFACGTDNGFRIYNVDPFRETFRRVFS G+GIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQ+RCIGELSFRSEVKAV+LRRDRVVV LA +IYVYRFSDL LLD+INTI+N+ GL+ALC D+SNMVLACPG+SRGHVNVELYD R+STL+PAHES+LAQLAL+ DG +VATAS +GTL+RVFDT +G+L+ ELRRGMDRA+++SICFNQ S+++ACCSDRGTVHIF L+ G
Sbjct: 1 MSSMNLSKEQENEILFVGFNQDSGCFACGTDNGFRIYNVDPFRETFRRVFS-AGVGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQNRCIGELSFRSEVKAVKLRRDRVVVALAHKIYVYRFSDLKLLDQINTIKNESGLLALCPDSSNMVLACPGISRGHVNVELYDTRKSTLVPAHESDLAQLALNSDGSLVATASDKGTLIRVFDTSSGALVQELRRGMDRADITSICFNQTSSYLACCSDRGTVHIFDLKGG 259
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: A0A4D9CZG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZG2_9STRA) HSP 1 Score: 417 bits (1072), Expect = 3.310e-140 Identity = 198/257 (77.04%), Postives = 230/257 (89.49%), Query Frame = 2 Query: 515 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSL 1285
MSSMSL+ +Q+NELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRR+F NGGIGIVEMLFR NL+ALVGGGRNPR+PPNKVMIWDDHQ+RC+GELSFRSEVKAV+LRRDRVVVVL +IYVYRF DLHL D+++T+ N +GLVALC D +N VLACPG+++G V VELYD R+STLIPAHESELAQ+AL++DG +ATAS +GTL+RVFDT +G LL ELRRGMDRAE+ S+ FN STFVAC S +GTVHIF++
Sbjct: 1 MSSMSLAQDQRNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRIFPNGGIGIVEMLFRTNLVALVGGGRNPRFPPNKVMIWDDHQNRCVGELSFRSEVKAVKLRRDRVVVVLTTKIYVYRFVDLHLQDQMSTLPNPRGLVALCPDNNNTVLACPGINKGSVRVELYDSRKSTLIPAHESELAQMALNLDGTRLATASDKGTLVRVFDTYSGELLQELRRGMDRAEIYSLAFNASSTFVACSSCKGTVHIFAV 257
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: W7U6T1_9STRA (Wd repeat domain phosphoinositide-interacting protein 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6T1_9STRA) HSP 1 Score: 413 bits (1062), Expect = 6.760e-139 Identity = 197/257 (76.65%), Postives = 229/257 (89.11%), Query Frame = 2 Query: 515 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSL 1285
MSSMSL+ +Q+NELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRR+F NGGIGIVEMLFR NL+ALVGGGRNPR+PPNKVMIWDDHQ+RC+GELSFRSEVKAV+LRRDRVVVVL +IYVYRF DLHL D+++T+ N +GLVAL D +N VLACPG+++G V VELYD R+STLIPAHESELAQ+AL++DG +ATAS +GTL+RVFDT +G LL ELRRGMDRAE+ S+ FN STFVAC S +GTVHIF++
Sbjct: 1 MSSMSLAQDQRNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRIFPNGGIGIVEMLFRTNLVALVGGGRNPRFPPNKVMIWDDHQNRCVGELSFRSEVKAVKLRRDRVVVVLTTKIYVYRFVDLHLQDQMSTLPNPRGLVALSPDNNNTVLACPGINKGSVRVELYDSRKSTLIPAHESELAQMALNLDGTRLATASDKGTLVRVFDTYSGELLQELRRGMDRAEIYSLAFNASSTFVACSSCKGTVHIFAV 257
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: A0A067CH88_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CH88_SAPPC) HSP 1 Score: 392 bits (1008), Expect = 2.060e-131 Identity = 184/257 (71.60%), Postives = 221/257 (85.99%), Query Frame = 2 Query: 515 MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSL 1285
M++M+LS Q+NELLFVGFNQDYGCFACGTD GFRIYN DPF+ETFRR FS+GGIGIVEMLFRCN+LA+VGGGRNPRYPPNKVMIWDDHQSR IGELSFRSEVKAV+LRRDRVVVVL +IYVY F+DL LLD I TI N +GLVALC ++N VLACPGVSRG V +ELYD R++TLI AHE++L+Q+ L+++G +ATAS +GTL+R+FDT +G L ELRRG D+AE+ S+CF+ S ++AC SD+ TVHIF+L
Sbjct: 1 MAAMNLSREQQNELLFVGFNQDYGCFACGTDTGFRIYNCDPFKETFRRDFSSGGIGIVEMLFRCNILAIVGGGRNPRYPPNKVMIWDDHQSRNIGELSFRSEVKAVKLRRDRVVVVLQNKIYVYNFADLKLLDHIETIANPKGLVALCPSSTNTVLACPGVSRGTVRIELYDQRKTTLITAHEADLSQMCLNLEGTRLATASDKGTLIRIFDTQSGQLTQELRRGADKAEIYSVCFSPNSQYLACSSDKHTVHIFAL 257
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: A0A485KXM0_9STRA (Aste57867_13230 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KXM0_9STRA) HSP 1 Score: 394 bits (1012), Expect = 4.930e-131 Identity = 188/263 (71.48%), Postives = 226/263 (85.93%), Query Frame = 2 Query: 506 AREMSSMSLSNNQKNELLFVGFNQDYG---CFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSL 1285
+R MSSM+LS Q+NELLFVGFNQDYG CFACGTD GFRIYN DPF+ETFRR FS+GGIGIVEMLFRCN+LA+VGGGRNPRYPPNKVMIWDDHQSR IGELSFRSEVKAV+LRRDRVVVVL +IYVY FSDL LLD I TI N +GL ALC +++N VLACPGVSRG V +ELYD+R++TLI AHE++L+Q+AL+++G +AT+S +GTL+RVFDT +G L+ ELRRG D+AE+ S+CF+ S ++AC SD+ TVHIF+L
Sbjct: 39 SRPMSSMNLSREQQNELLFVGFNQDYGTMRCFACGTDTGFRIYNCDPFKETFRRDFSSGGIGIVEMLFRCNILAIVGGGRNPRYPPNKVMIWDDHQSRNIGELSFRSEVKAVKLRRDRVVVVLQNKIYVYNFSDLKLLDHIETITNPKGLCALCPNSTNTVLACPGVSRGTVRIELYDMRKTTLITAHEADLSQMALNLEGTRLATSSDKGTLIRVFDTQSGQLMQELRRGADKAEIYSVCFSPNSQYLACSSDKYTVHIFAL 301
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: A0A7S3JWF9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWF9_9STRA) HSP 1 Score: 383 bits (984), Expect = 7.830e-127 Identity = 177/249 (71.08%), Postives = 217/249 (87.15%), Query Frame = 2 Query: 542 QKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSLE 1288
+K+ELLFV FNQD+GCFACGT++GFRIYNVDPF+ETFRR F GGIGIVEMLFRCNLLALVGGG +PRYPPNKVMIWDDHQ+RCIGELSFRSEVKAV+LRRDRVVV LA ++YVYRFSDL LLD+I+T N +GL ALCAD ++ VLACPGV++GHV +ELYD R+ST++ AHES+L +LAL+ DG +VATAS +GTL+R+FDT TG+ + ELRRG+DRA + +I F+ S +VAC SD+GT H+FS++
Sbjct: 16 EKSELLFVSFNQDFGCFACGTESGFRIYNVDPFKETFRRAFRGGGIGIVEMLFRCNLLALVGGGSSPRYPPNKVMIWDDHQNRCIGELSFRSEVKAVKLRRDRVVVALATKVYVYRFSDLKLLDQISTQVNSRGLAALCADPAHNVLACPGVNKGHVRIELYDSRKSTIVAAHESDLCRLALNSDGSLVATASDKGTLVRIFDTHTGAQVRELRRGVDRAIIYAIAFDPDSKYVACTSDKGTAHVFSIQ 264
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: A0A7S2CPD6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPD6_9STRA) HSP 1 Score: 380 bits (976), Expect = 7.760e-126 Identity = 179/250 (71.60%), Postives = 218/250 (87.20%), Query Frame = 2 Query: 551 ELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSLEPGTS 1300
ELL++GFNQD+GCFACG DNGFRIYN +PF+ETFRR GGIGIVEMLFRCNLLALVGGGRNP++PPN V IWDDHQ+R IGEL FRSEVKAV+LRRDRVVVVL +IYVYRFSDL LLD+I+T++N +GL+ALC DASN+VLACPGV++G+V VELYD+R+S++IPAHESEL+Q+AL++DG +ATAS +GTL+RVFDT TG +L ELRRGMDRA + + FN+ S F+AC SD+GTVHIF+L T+
Sbjct: 8 ELLYLGFNQDHGCFACGMDNGFRIYNCEPFKETFRRAMK-GGIGIVEMLFRCNLLALVGGGRNPKFPPNIVKIWDDHQNRAIGELMFRSEVKAVKLRRDRVVVVLLHKIYVYRFSDLKLLDQISTLKNPKGLIALCPDASNVVLACPGVTKGNVRVELYDMRKSSIIPAHESELSQIALNLDGTRLATASDKGTLIRVFDTHTGDILKELRRGMDRAVIHCVTFNKTSDFLACSSDKGTVHIFALGDKTA 256
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Match: F0Y5R4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5R4_AURAN) HSP 1 Score: 370 bits (949), Expect = 1.660e-123 Identity = 179/233 (76.82%), Postives = 206/233 (88.41%), Query Frame = 2 Query: 596 CGTDNGFRIYNVDPFRETFRRVFSNGGIGIVEMLFRCNLLALVGGGRNPRYPPNKVMIWDDHQSRCIGELSFRSEVKAVRLRRDRVVVVLAQRIYVYRFSDLHLLDRINTIRNDQGLVALCADASNMVLACPGVSRGHVNVELYDLRRSTLIPAHESELAQLALSMDGKMVATASSRGTLLRVFDTDTGSLLHELRRGMDRAEVSSICFNQQSTFVACCSDRGTVHIFSLEPG 1294
CGT++GFRIYNVDPF+ETFRRVFS GG+G+VEMLFRCNLLALVGGGR+PRYPPNKVMIWDDHQ+RCIGELSFRS+VKAV+LRRDRVVVVLA ++YVYRFSDL LLD+INT N +GLVALC SN VLACPGV+RGHV VELYD R+ST+I AHES+LA+LALS DG +VATAS +GTLLRVFDT TG+ L ELRRG+DRA V SI F+ ++ F+AC SD+GTVHIFSL G
Sbjct: 1 CGTESGFRIYNVDPFKETFRRVFSGGGVGVVEMLFRCNLLALVGGGRSPRYPPNKVMIWDDHQNRCIGELSFRSDVKAVKLRRDRVVVVLATKVYVYRFSDLKLLDQINTQPNPRGLVALCPHPSNNVLACPGVNRGHVRVELYDARKSTIITAHESDLARLALSGDGALVATASDKGTLLRVFDTHTGAQLRELRRGVDRAAVYSIAFDAEAKFLACSSDKGTVHIFSLGDG 233 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17554.1 >prot_E-siliculosus-1a_M_contig96.17554.1 ID=prot_E-siliculosus-1a_M_contig96.17554.1|Name=mRNA_E-siliculosus-1a_M_contig96.17554.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=263bp MSSMSLSNNQKNELLFVGFNQDYGCFACGTDNGFRIYNVDPFRETFRRVFback to top mRNA from alignment at E-siliculosus-1a_M_contig96:77683..82847+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17554.1 ID=mRNA_E-siliculosus-1a_M_contig96.17554.1|Name=mRNA_E-siliculosus-1a_M_contig96.17554.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5165bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:77683..82847+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:77683..82847+ >mRNA_E-siliculosus-1a_M_contig96.17554.1 ID=mRNA_E-siliculosus-1a_M_contig96.17554.1|Name=mRNA_E-siliculosus-1a_M_contig96.17554.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1578bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:77683..82847+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |