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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17551.1 vs. uniprot
Match: A0A6H5L5F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE) HSP 1 Score: 162 bits (411), Expect = 3.570e-46 Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2 Query: 290 MSSTMRSPEITRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIV 553
MSSTMRSPEITRSPARVA AGAG RNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIV
Sbjct: 1 MSSTMRSPEITRSPARVADAGAGERNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIV 88
BLAST of mRNA_E-siliculosus-1a_M_contig96.17551.1 vs. uniprot
Match: D7G3N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N7_ECTSI) HSP 1 Score: 118 bits (295), Expect = 3.340e-28 Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 2 Query: 290 MSSTMRSPEITRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLI 478
MSSTMRSPEI+RSPARVAGAGAGGRNLQSIGRQRSLVEDHPD+ERIPARTVCAAFSLLVLGL+
Sbjct: 1 MSSTMRSPEISRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDNERIPARTVCAAFSLLVLGLL 63
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 444 |
| Model size | 1084 |
| Exons | 3 |
| Ec32 ortholog | Ec-00_006650.1 |
| Ec32 ortholog description | Protein of unknown function DUF872, transmembrane |
| Hectar predicted targeting category | signal anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936527.13219-CDS-E-siliculosus-1a_M_contig96:50638..50824 | 1622936527.13219-CDS-E-siliculosus-1a_M_contig96:50638..50824 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 50639..50824 + |
| 1696251117.2960286-CDS-E-siliculosus-1a_M_contig96:50638..50824 | 1696251117.2960286-CDS-E-siliculosus-1a_M_contig96:50638..50824 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 50639..50824 + |
| 1622936527.1485348-CDS-E-siliculosus-1a_M_contig96:52121..52379 | 1622936527.1485348-CDS-E-siliculosus-1a_M_contig96:52121..52379 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 52122..52379 + |
| 1696251117.3052843-CDS-E-siliculosus-1a_M_contig96:52121..52379 | 1696251117.3052843-CDS-E-siliculosus-1a_M_contig96:52121..52379 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 52122..52379 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17551.1 >prot_E-siliculosus-1a_M_contig96.17551.1 ID=prot_E-siliculosus-1a_M_contig96.17551.1|Name=mRNA_E-siliculosus-1a_M_contig96.17551.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=148bp
MSSTMRSPEITRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDSERIPART
VCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIVGKCNPQSLFVIL
SLSCLWGRGVRGKAEDGRPSLLTQSNDFCVLVLSQLYIYMPPYNSRL* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:50025..52730+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17551.1 ID=mRNA_E-siliculosus-1a_M_contig96.17551.1|Name=mRNA_E-siliculosus-1a_M_contig96.17551.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2706bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:50025..52730+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAGCAGGCCAGGCGCCACAGAGAAGTGCAACAAGCGGGGAGAGCGCCAAC
ACGCTTAGACTCTATCGTGGGTGCAGATCGGTAAGCGTGCGACGAATTTA
TTCGGTTCCCATCGTAGGGCGATGCAACTTGTTCTCTCAAACTCCAAATG
TGTGTGTAAGCATTCTCTGTAGTGCAGCATCGTAGACTACAGGTACTGCT
GTTGCAGTGGCGCACTGCTGTAGCTGCTGCAACTTGTATCCTATGAGGCA
AGCAGGAGTACCCTCTGCTTTGTTCCAGCCAACGAGTTGACGTCGCACTT
GCCCGTACCTCTACGCCTCTACATGTAAATCCCTCCTCTGTCTCTGCTGT
CTCGCGTGCTGCGGGTGTGTGTTTCCATCTCCTCACCTACATACAATATA
TGTAGCTGAGAGGGAAAGCCTGCAAGGGACAACAACCGGCGGCGCGCGTC
TCTGCCACTGCAACAGCAGCACAGAGGACCCGGCTGGATTGGTTCTATAT
ATTTGCTCTGCTGTTGGGGCAACGCGTCTGCCGCTACTGCCGTACCTCAA
CAAACGCAGGAGCCGCTGGAGCTCCATTTGTTCCGCTTCTCTGTGGGGTG
TCCCAACAGAGAGGATGTCGTCCACCATGCGATCTCCGGAGATAACGCGC
TCCCCGGCGCGAGTTGCGGGCGCGGGCGCGGGCGGGAGGAACCTTCAGTC
GATCGGGAGACAGCGATCGCTGGTGGAAGACCACCCAGATAGCGAGAGGA
TCCCCGCGAGAACAGTGTGCGCAGCCTTCTCTCTCCTCGTCCTCGGACTG
GTGAGCAGCAAGGAGGCGTGTAGGTCATGTAAGATACCACCCCCCCCTTG
CGGACGGATTGTCAAAGCTCGAATACTCCACCACGAAGAGGATGACAGAA
CCAAAATATGCGTCTTCGGAGAGATGTCGACGAGATGGGTCCAGTGCCGC
AAATTTCGGCACCGCCACCACTGTTTTTGATGCGGAGTAATCGAGCTTTG
AAAATGGTCCAGAGGTGGTGTGGTATCTTGTGCAACAAATGCATACAGTA
GAGCATTTACCGCTTTTGATACCGATACACGTTCATAGAAAATCACAAAC
AAACACAGAAAGGCCACACCCGTTCGAGATATAACCACATTAGCGGAAGG
GGATGCGTTGAAGTCTTCACAGTGCGTGGAAGAAAAGCCGGGTGGCTTCG
ATCCGAGTCTGTTTCCCGTCGCGTGGGTTCAGTTTGAGAGGTCAAGGCAA
GAGGGAGGGAAAGAGACCGAGAGGCAAAGACCTGGGAGAAGACAGAGACA
CAGCACAGAGAGGGGAGAAGTGGAAGCGTGCTGCGTAGGATTTTATCTCT
TGGACAGGGTGTGATGAGTGGTCGATCGTTGCTTCGCTGAGTAGACCTAG
TTGCCGTGCTTGGAGGATGTTCCTTGCTAGGAGTGCCGCGGGTCTGTGGA
ATGACACATGATCGTGCTATGTCGCAGGCAATGTAGCGTCGTTCTCTGAA
CAAGCACAAGACGATTCGAAACCCTGGCCCGTGCAGGCAAAGCGCCTGGT
AACTGGTGCCTGGTGCCGGTGCCATCCCCATGTGGTTCAAATTTCGTCGC
GAAGACGATACTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTACTGTCTC
TGCTCAGAAGTACCCTCAGATTGCCATGCAATTATTCGAAGTCAGTACCC
TGAGCCTGGAACATTCGACGGACGAAGGCTGGGAGGATAGCGCTTTGTCA
CGTTTCTAAGTACCTCTGTGGGATGTATATGGTGCCACACATAGAACCGT
CCTGTTTTGTTCGAGGTGTGTTCTGCAGCGCAACGCGCGCGTGTTGGTTC
GGCAGCACGATCCTGCGCCCAACGGTGTTGGTTGCTGACCTGCAGGGCGC
GCGTAGGCATTGGGCGGGTAGAACAAGTGTGCATGGCGTAAAGACGGCAA
AGAAGTGCCGAAGTCTATCCACACGCGCTGCCTCTACTCGTCGCTCAGTA
GTTTGACAGACGTTAATTATTTATGTGAGAGCCCACACGGGATGATCATT
TTTCCTGTGTTCCTATCCCCCTTTCTGGTTCGCGCGCGCTGTTTCAGATC
CTGTTGTGCGTGAGCGCAAATTTCTTCGCCATGAAACACCCTGGTTCGGT
TGCCTTCTTAGTACTCGGAATCGTCGGTAAGTGCAATCCTCAATCCCTGT
TCGTCATTTTGTCACTTTCGTGTTTGTGGGGAAGGGGGGTAAGGGGGAAA
GCAGAGGACGGACGACCTTCGCTCCTCACGCAATCGAACGATTTTTGTGT
GCTCGTTCTTTCGCAGCTATACATATATATGCCCCCTTACAATTCCAGGC
TGTGATTGTAGGTACCCACATTACGACCTTTCTTTTTTCGTTTTGGAACT
CTTGTGGCGTTGGGAATTTTAGGGCCGCGCGCCTCCCCGTTCGTTGCACG
ATGCACTGTAGTACGATATAAACCTGTACCGAATAAGTTGTTACTGCGCA
TTTTTTGGCGTGGTCACGTTGGTGTTTGTTCTCCTCTACTAGCCGGCGCT
GCAACATGACAAGTAGCACAGTAGCGCCCGCCCTCGTCGCCCAAGCCTGC
CGCCGTCGCACACCCTTTCCTCATCCCCTGCTGCAACCTCCCCTCCAGTG
CAATCGATGAGAAATATTCGCGTCCTTTTGTGATGGTGCCTATTTTTATC
TCTAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:50025..52730+ >mRNA_E-siliculosus-1a_M_contig96.17551.1 ID=mRNA_E-siliculosus-1a_M_contig96.17551.1|Name=mRNA_E-siliculosus-1a_M_contig96.17551.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=888bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:50025..52730+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGTCCACCATGCGATCTCCGGAGATAACGCGCTCCCCGGCGCGAGT
TGCGGGCGCGGGCGCGGGCGGGAGGAACCTTCAGTCGATCGGGAGACAGC
GATCGCTGGTGGAAGACCACCCAGATAGCGAGAGGATCCCCGCGAGAACA
GTGTGCGCAGCCTTCTCTCTCCTCGTCCTCGGACTGATGTCGTCCACCAT
GCGATCTCCGGAGATAACGCGCTCCCCGGCGCGAGTTGCGGGCGCGGGCG
CGGGCGGGAGGAACCTTCAGTCGATCGGGAGACAGCGATCGCTGGTGGAA
GACCACCCAGATAGCGAGAGGATCCCCGCGAGAACAGTGTGCGCAGCCTT
CTCTCTCCTCGTCCTCGGACTGATCCTGTTGTGCGTGAGCGCAAATTTCT
TCGCCATGAAACACCCTGGTTCGGTTGCCTTCTTAGTACTCGGAATCGTC
GGTAAGTGCAATCCTCAATCCCTGTTCGTCATTTTGTCACTTTCGTGTTT
GTGGGGAAGGGGGGTAAGGGGGAAAGCAGAGGACGGACGACCTTCGCTCC
TCACGCAATCGAACGATTTTTGTGTGCTCGTTCTTTCGCAGCTATACATA
TATATGCCCCCTTACAATTCCAGGCTGTGAATCCTGTTGTGCGTGAGCGC
AAATTTCTTCGCCATGAAACACCCTGGTTCGGTTGCCTTCTTAGTACTCG
GAATCGTCGGTAAGTGCAATCCTCAATCCCTGTTCGTCATTTTGTCACTT
TCGTGTTTGTGGGGAAGGGGGGTAAGGGGGAAAGCAGAGGACGGACGACC
TTCGCTCCTCACGCAATCGAACGATTTTTGTGTGCTCGTTCTTTCGCAGC
TATACATATATATGCCCCCTTACAATTCCAGGCTGTGA back to top
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