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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC) HSP 1 Score: 94.7 bits (234), Expect = 2.090e-21 Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2 Query: 182 LVKIHEVRAHNLGAYNEAFRNLQSVITLYH---GVKTGEIEV-DMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHTLPKI 496
L I + R N A+NEAFRN+Q+V+++YH +T + + D+M +MTNYT+RASKAMEAV++S L D KAA E AMM IQL++EE IN R +SK +LP I
Sbjct: 63 LTVIFQHRTRNERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTI 171
BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: B5LWK7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK7_9PHYC) HSP 1 Score: 91.3 bits (225), Expect = 3.430e-20 Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 2 Query: 182 LVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKTGEIEVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHTLP 490
L + R A+NEAFRN+Q+VI++YH VK + +MM +MTN+ +RASKA+ A++ LA D +KAA E AMM+IQLS+EE I+F R +SK +LP
Sbjct: 63 LYTVFHHREFKRDAFNEAFRNIQNVISVYHPVKEAAV-ANMMSATKMTNFGVRASKALGAMHDEILAKDPMKAAAFEKAMMSIQLSLEESIDFVRLKSKKSLP 164
BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: Q8QKW1_ESV1K (EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K) HSP 1 Score: 71.2 bits (173), Expect = 2.080e-12 Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = 2 Query: 182 LVKIHEVRAHNLGAYNEAFRNLQSVITLYHG-VKTGEIEVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHTLPKI 496
L+ IH R ++ A+N+A R++QSV LY + GE + +M +++TNY+I A+K+M A+ +S A + +++ VE +MM + L+ EE IN R SK LP+I
Sbjct: 71 LLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 5.670e-7 Identity = 39/125 (31.20%), Postives = 72/125 (57.60%), Query Frame = 2 Query: 104 YWCGKTDTERK--QNSQISRQRAFSS----T*LVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKTGEIE-VDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFIN 457
++ G+++ ER QN + + S L+++H R + A+ +A R++QSVI LY+ + V +M ++TNY+I A+K+M A+ +S A + +++ VE +MM+I L+ E+ IN
Sbjct: 143 FYRGRSNVERPGGQNQKFADLEVLESFDIYKDLLELHSARECDEEAFCDACRHIQSVIYLYNRFLVDKTRTVSIMKSHKITNYSIMATKSMNALLISCRAKNYPQSSDVEKSMMHIHLTFEDIIN 267
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 336 |
| Model size | 496 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936526.78563-UTR-E-siliculosus-1a_M_contig96:594584..594669 | 1622936526.78563-UTR-E-siliculosus-1a_M_contig96:594584..594669 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 594585..594669 - |
| 1696251117.1489942-UTR-E-siliculosus-1a_M_contig96:594584..594669 | 1696251117.1489942-UTR-E-siliculosus-1a_M_contig96:594584..594669 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 594585..594669 - |
| 1622936526.8174357-UTR-E-siliculosus-1a_M_contig96:595005..595080 | 1622936526.8174357-UTR-E-siliculosus-1a_M_contig96:595005..595080 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 595006..595080 - |
| 1696251117.1726406-UTR-E-siliculosus-1a_M_contig96:595005..595080 | 1696251117.1726406-UTR-E-siliculosus-1a_M_contig96:595005..595080 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 595006..595080 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936526.8036432-CDS-E-siliculosus-1a_M_contig96:594669..595005 | 1622936526.8036432-CDS-E-siliculosus-1a_M_contig96:594669..595005 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 594670..595005 - |
| 1696251117.1606197-CDS-E-siliculosus-1a_M_contig96:594669..595005 | 1696251117.1606197-CDS-E-siliculosus-1a_M_contig96:594669..595005 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 594670..595005 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17626.1 >prot_E-siliculosus-1a_M_contig96.17626.1 ID=prot_E-siliculosus-1a_M_contig96.17626.1|Name=mRNA_E-siliculosus-1a_M_contig96.17626.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=112bp
MAPPVDYAQVLVWENRYGKKTKFTNLETASILIDLASQDSRGQSAQLRCI
QRSIPEPAERNYSVSRGQDWRDRSRHDATKTHDELHHTRIEGHGSGVFVH
TRRRQDQGCWR* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:594585..595080- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17626.1 ID=mRNA_E-siliculosus-1a_M_contig96.17626.1|Name=mRNA_E-siliculosus-1a_M_contig96.17626.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=496bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:594585..595080- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATTTTCGCTGGTGCAGTTAAAGGCGGCCTTCACGGTCTGCTAATAGGCAT
TGCCTTGGGAGTGGCCGGTAACATTATGGCACCCCCCGTGGACTACGCAC
AGGTACTGGTGTGGGAAAACAGATACGGAAAGAAAACAAAATTCACAAAT
CTCGAGACAGCGAGCATTCTCATCGACCTAGCTAGTCAAGATTCACGAGG
TCAGAGCGCACAACTTAGGTGCATACAACGAAGCATTCCGGAACCTGCAG
AGCGTAATTACTCTGTATCACGGGGTCAAGACTGGAGAGATAGAAGTAGA
CATGATGCTACCAAAACGCATGACGAACTACACCATACGCGCATCGAAGG
CCATGGAAGCGGTGTATTTGTCCACACTCGCCGGCGACAAGATCAAGGCT
GCTGGCGTTGAGAGTGCTATGATGAACATACAGCTGTCAGTGGAAGAGTT
CATCAACTTCACTAGAGAGGAGTCGAAGCACACGTTACCAAAAATC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:594585..595080- >mRNA_E-siliculosus-1a_M_contig96.17626.1 ID=mRNA_E-siliculosus-1a_M_contig96.17626.1|Name=mRNA_E-siliculosus-1a_M_contig96.17626.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:594585..595080- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCACCCCCCGTGGACTACGCACAGGTACTGGTGTGGGAAAACAGATA
CGGAAAGAAAACAAAATTCACAAATCTCGAGACAGCGAGCATTCTCATCG
ACCTAGCTAGTCAAGATTCACGAGGTCAGAGCGCACAACTTAGGTGCATA
CAACGAAGCATTCCGGAACCTGCAGAGCGTAATTACTCTGTATCACGGGG
TCAAGACTGGAGAGATAGAAGTAGACATGATGCTACCAAAACGCATGACG
AACTACACCATACGCGCATCGAAGGCCATGGAAGCGGTGTATTTGTCCAC
ACTCGCCGGCGACAAGATCAAGGCTGCTGGCGTTGAATGGCACCCCCCGT
GGACTACGCACAGGTACTGGTGTGGGAAAACAGATACGGAAAGAAAACAA
AATTCACAAATCTCGAGACAGCGAGCATTCTCATCGACCTAGCTAGTCAA
GATTCACGAGGTCAGAGCGCACAACTTAGGTGCATACAACGAAGCATTCC
GGAACCTGCAGAGCGTAATTACTCTGTATCACGGGGTCAAGACTGGAGAG
ATAGAAGTAGACATGATGCTACCAAAACGCATGACGAACTACACCATACG
CGCATCGAAGGCCATGGAAGCGGTGTATTTGTCCACACTCGCCGGCGACA
AGATCAAGGCTGCTGGCGTTGA back to top
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