mRNA_E-siliculosus-1a_M_contig96.17626.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17626.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17626.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC)

HSP 1 Score: 94.7 bits (234), Expect = 2.090e-21
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:  182 LVKIHEVRAHNLGAYNEAFRNLQSVITLYH---GVKTGEIEV-DMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHTLPKI 496
            L  I + R  N  A+NEAFRN+Q+V+++YH     +T + +  D+M   +MTNYT+RASKAMEAV++S L  D  KAA  E AMM IQL++EE IN  R +SK +LP I
Sbjct:   63 LTVIFQHRTRNERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTI 171
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: B5LWK7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK7_9PHYC)

HSP 1 Score: 91.3 bits (225), Expect = 3.430e-20
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 2 
Query:  182 LVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKTGEIEVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHTLP 490
            L  +   R     A+NEAFRN+Q+VI++YH VK   +  +MM   +MTN+ +RASKA+ A++   LA D +KAA  E AMM+IQLS+EE I+F R +SK +LP
Sbjct:   63 LYTVFHHREFKRDAFNEAFRNIQNVISVYHPVKEAAV-ANMMSATKMTNFGVRASKALGAMHDEILAKDPMKAAAFEKAMMSIQLSLEESIDFVRLKSKKSLP 164
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: Q8QKW1_ESV1K (EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K)

HSP 1 Score: 71.2 bits (173), Expect = 2.080e-12
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = 2 
Query:  182 LVKIHEVRAHNLGAYNEAFRNLQSVITLYHG-VKTGEIEVDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHTLPKI 496
            L+ IH  R  ++ A+N+A R++QSV  LY   +  GE +  +M  +++TNY+I A+K+M A+ +S  A +  +++ VE +MM + L+ EE IN  R  SK  LP+I
Sbjct:   71 LLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.670e-7
Identity = 39/125 (31.20%), Postives = 72/125 (57.60%), Query Frame = 2 
Query:  104 YWCGKTDTERK--QNSQISRQRAFSS----T*LVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKTGEIE-VDMMLPKRMTNYTIRASKAMEAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFIN 457
            ++ G+++ ER   QN + +      S      L+++H  R  +  A+ +A R++QSVI LY+     +   V +M   ++TNY+I A+K+M A+ +S  A +  +++ VE +MM+I L+ E+ IN
Sbjct:  143 FYRGRSNVERPGGQNQKFADLEVLESFDIYKDLLELHSARECDEEAFCDACRHIQSVIYLYNRFLVDKTRTVSIMKSHKITNYSIMATKSMNALLISCRAKNYPQSSDVEKSMMHIHLTFEDIIN 267
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XM43_9PHYC2.090e-2150.46FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWK7_9PHYC3.430e-2048.54Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QKW1_ESV1K2.080e-1238.68EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K[more]
A0A6H5KJD3_9PHAE5.670e-731.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:594585..595080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size336
Model size496
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17626.1prot_E-siliculosus-1a_M_contig96.17626.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 594670..595005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.78563-UTR-E-siliculosus-1a_M_contig96:594584..5946691622936526.78563-UTR-E-siliculosus-1a_M_contig96:594584..594669Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 594585..594669 -
1696251117.1489942-UTR-E-siliculosus-1a_M_contig96:594584..5946691696251117.1489942-UTR-E-siliculosus-1a_M_contig96:594584..594669Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 594585..594669 -
1622936526.8174357-UTR-E-siliculosus-1a_M_contig96:595005..5950801622936526.8174357-UTR-E-siliculosus-1a_M_contig96:595005..595080Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 595006..595080 -
1696251117.1726406-UTR-E-siliculosus-1a_M_contig96:595005..5950801696251117.1726406-UTR-E-siliculosus-1a_M_contig96:595005..595080Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 595006..595080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.8036432-CDS-E-siliculosus-1a_M_contig96:594669..5950051622936526.8036432-CDS-E-siliculosus-1a_M_contig96:594669..595005Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 594670..595005 -
1696251117.1606197-CDS-E-siliculosus-1a_M_contig96:594669..5950051696251117.1606197-CDS-E-siliculosus-1a_M_contig96:594669..595005Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 594670..595005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17626.1

>prot_E-siliculosus-1a_M_contig96.17626.1 ID=prot_E-siliculosus-1a_M_contig96.17626.1|Name=mRNA_E-siliculosus-1a_M_contig96.17626.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=112bp
MAPPVDYAQVLVWENRYGKKTKFTNLETASILIDLASQDSRGQSAQLRCI
QRSIPEPAERNYSVSRGQDWRDRSRHDATKTHDELHHTRIEGHGSGVFVH
TRRRQDQGCWR*
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mRNA from alignment at E-siliculosus-1a_M_contig96:594585..595080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17626.1 ID=mRNA_E-siliculosus-1a_M_contig96.17626.1|Name=mRNA_E-siliculosus-1a_M_contig96.17626.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=496bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:594585..595080- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATTTTCGCTGGTGCAGTTAAAGGCGGCCTTCACGGTCTGCTAATAGGCAT
TGCCTTGGGAGTGGCCGGTAACATTATGGCACCCCCCGTGGACTACGCAC
AGGTACTGGTGTGGGAAAACAGATACGGAAAGAAAACAAAATTCACAAAT
CTCGAGACAGCGAGCATTCTCATCGACCTAGCTAGTCAAGATTCACGAGG
TCAGAGCGCACAACTTAGGTGCATACAACGAAGCATTCCGGAACCTGCAG
AGCGTAATTACTCTGTATCACGGGGTCAAGACTGGAGAGATAGAAGTAGA
CATGATGCTACCAAAACGCATGACGAACTACACCATACGCGCATCGAAGG
CCATGGAAGCGGTGTATTTGTCCACACTCGCCGGCGACAAGATCAAGGCT
GCTGGCGTTGAGAGTGCTATGATGAACATACAGCTGTCAGTGGAAGAGTT
CATCAACTTCACTAGAGAGGAGTCGAAGCACACGTTACCAAAAATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:594585..595080-

>mRNA_E-siliculosus-1a_M_contig96.17626.1 ID=mRNA_E-siliculosus-1a_M_contig96.17626.1|Name=mRNA_E-siliculosus-1a_M_contig96.17626.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:594585..595080- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCACCCCCCGTGGACTACGCACAGGTACTGGTGTGGGAAAACAGATA
CGGAAAGAAAACAAAATTCACAAATCTCGAGACAGCGAGCATTCTCATCG
ACCTAGCTAGTCAAGATTCACGAGGTCAGAGCGCACAACTTAGGTGCATA
CAACGAAGCATTCCGGAACCTGCAGAGCGTAATTACTCTGTATCACGGGG
TCAAGACTGGAGAGATAGAAGTAGACATGATGCTACCAAAACGCATGACG
AACTACACCATACGCGCATCGAAGGCCATGGAAGCGGTGTATTTGTCCAC
ACTCGCCGGCGACAAGATCAAGGCTGCTGGCGTTGAATGGCACCCCCCGT
GGACTACGCACAGGTACTGGTGTGGGAAAACAGATACGGAAAGAAAACAA
AATTCACAAATCTCGAGACAGCGAGCATTCTCATCGACCTAGCTAGTCAA
GATTCACGAGGTCAGAGCGCACAACTTAGGTGCATACAACGAAGCATTCC
GGAACCTGCAGAGCGTAATTACTCTGTATCACGGGGTCAAGACTGGAGAG
ATAGAAGTAGACATGATGCTACCAAAACGCATGACGAACTACACCATACG
CGCATCGAAGGCCATGGAAGCGGTGTATTTGTCCACACTCGCCGGCGACA
AGATCAAGGCTGCTGGCGTTGA
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