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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI) HSP 1 Score: 122 bits (306), Expect = 2.120e-35 Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 Query: 1 MGVAYSLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSSQ 180
MG AYSLVGVSYH+AHGGSRKNHFVTQLRVRGRWHKYDCLAGG++TSSDTFD DWNSSSQ
Sbjct: 1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQ 60
BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI) HSP 1 Score: 121 bits (304), Expect = 7.170e-34 Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 Query: 1 MGVAYSLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSSQ 180
MG AYSLVGVSYH+AHGGSRKNHFVTQLRVRGRWHKYDCLAGG+VTS+DTFD DWNSSSQ
Sbjct: 1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQ 60
BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 2.560e-15 Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1 Query: 1 MGVAYSLVGVSYHVAHGGS-RKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSS 177
MGV YSLVG+S +A GG +NHFV+Q+ +RGRWHK DCL GG VTSSD F W+ SS
Sbjct: 102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSS 161
BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE) HSP 1 Score: 48.5 bits (114), Expect = 5.530e-5 Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 1 Query: 94 GRWHKYDCLAGGSVTSSDTFDDDWNSSS 177
GRWHKYDCL GG VTSSD +D W+ SS
Sbjct: 576 GRWHKYDCLQGGIVTSSDAYDSGWHVSS 603
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 180 |
| Model size | 180 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog | Ec-00_003710.1 |
| Ec32 ortholog description | expressed unknown protein |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936525.7960944-CDS-E-siliculosus-1a_M_contig959:1160..1340 | 1622936525.7960944-CDS-E-siliculosus-1a_M_contig959:1160..1340 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig959 1161..1340 - |
| 1696251116.8692367-CDS-E-siliculosus-1a_M_contig959:1160..1340 | 1696251116.8692367-CDS-E-siliculosus-1a_M_contig959:1160..1340 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig959 1161..1340 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig959.17547.1 >prot_E-siliculosus-1a_M_contig959.17547.1 ID=prot_E-siliculosus-1a_M_contig959.17547.1|Name=mRNA_E-siliculosus-1a_M_contig959.17547.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=60bp
MGVAYSLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDT
FDDDWNSSSQ back to topmRNA from alignment at E-siliculosus-1a_M_contig959:1161..1340- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig959.17547.1 ID=mRNA_E-siliculosus-1a_M_contig959.17547.1|Name=mRNA_E-siliculosus-1a_M_contig959.17547.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=180bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig959:1161..1340- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGGTTGCATATTCCTTGGTCGGCGTATCTTACCATGTTGCGCATGG
TGGGTCGCGGAAGAACCACTTCGTCACTCAACTGCGTGTCAGAGGAAGGT
GGCACAAGTATGACTGCCTGGCGGGAGGATCCGTAACTTCTTCAGACACC
TTCGATGACGACTGGAACAGCTCGTCCCAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig959:1161..1340- >mRNA_E-siliculosus-1a_M_contig959.17547.1 ID=mRNA_E-siliculosus-1a_M_contig959.17547.1|Name=mRNA_E-siliculosus-1a_M_contig959.17547.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig959:1161..1340- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGGTTGCATATTCCTTGGTCGGCGTATCTTACCATGTTGCGCATGG
TGGGTCGCGGAAGAACCACTTCGTCACTCAACTGCGTGTCAGAGGAAGGT
GGCACAAGTATGACTGCCTGGCGGGAGGATCCGTAACTTCTTCAGACACC
TTCGATGACGACTGGAACAGCTCGTCCCAAATGGGGGTTGCATATTCCTT
GGTCGGCGTATCTTACCATGTTGCGCATGGTGGGTCGCGGAAGAACCACT
TCGTCACTCAACTGCGTGTCAGAGGAAGGTGGCACAAGTATGACTGCCTG
GCGGGAGGATCCGTAACTTCTTCAGACACCTTCGATGACGACTGGAACAG
CTCGTCCCAA back to top
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