mRNA_E-siliculosus-1a_M_contig959.17547.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig959.17547.1
Unique NamemRNA_E-siliculosus-1a_M_contig959.17547.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.120e-35
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MGVAYSLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSSQ 180
            MG AYSLVGVSYH+AHGGSRKNHFVTQLRVRGRWHKYDCLAGG++TSSDTFD DWNSSSQ
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQ 60
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BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 7.170e-34
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MGVAYSLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSSQ 180
            MG AYSLVGVSYH+AHGGSRKNHFVTQLRVRGRWHKYDCLAGG+VTS+DTFD DWNSSSQ
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQ 60
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BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.560e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 MGVAYSLVGVSYHVAHGGS-RKNHFVTQLRVRGRWHKYDCLAGGSVTSSDTFDDDWNSSS 177
            MGV YSLVG+S  +A GG   +NHFV+Q+ +RGRWHK DCL GG VTSSD F   W+ SS
Sbjct:  102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSS 161
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BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 5.530e-5
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 1 
Query:   94 GRWHKYDCLAGGSVTSSDTFDDDWNSSS 177
            GRWHKYDCL GG VTSSD +D  W+ SS
Sbjct:  576 GRWHKYDCLQGGIVTSSDAYDSGWHVSS 603
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig959.17547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSJ9_ECTSI2.120e-3591.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7U5_ECTSI7.170e-3491.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE2.560e-1561.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV6_9PHAE5.530e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig959contigE-siliculosus-1a_M_contig959:1161..1340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size180
Model size180
Exons1
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-00_003710.1
Ec32 ortholog descriptionexpressed unknown protein
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936525.7960944-CDS-E-siliculosus-1a_M_contig959:1160..13401622936525.7960944-CDS-E-siliculosus-1a_M_contig959:1160..1340Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig959 1161..1340 -
1696251116.8692367-CDS-E-siliculosus-1a_M_contig959:1160..13401696251116.8692367-CDS-E-siliculosus-1a_M_contig959:1160..1340Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig959 1161..1340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig959.17547.1prot_E-siliculosus-1a_M_contig959.17547.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig959 1161..1340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig959.17547.1

>prot_E-siliculosus-1a_M_contig959.17547.1 ID=prot_E-siliculosus-1a_M_contig959.17547.1|Name=mRNA_E-siliculosus-1a_M_contig959.17547.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=60bp
MGVAYSLVGVSYHVAHGGSRKNHFVTQLRVRGRWHKYDCLAGGSVTSSDT
FDDDWNSSSQ
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mRNA from alignment at E-siliculosus-1a_M_contig959:1161..1340-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig959.17547.1 ID=mRNA_E-siliculosus-1a_M_contig959.17547.1|Name=mRNA_E-siliculosus-1a_M_contig959.17547.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=180bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig959:1161..1340- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGGTTGCATATTCCTTGGTCGGCGTATCTTACCATGTTGCGCATGG
TGGGTCGCGGAAGAACCACTTCGTCACTCAACTGCGTGTCAGAGGAAGGT
GGCACAAGTATGACTGCCTGGCGGGAGGATCCGTAACTTCTTCAGACACC
TTCGATGACGACTGGAACAGCTCGTCCCAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig959:1161..1340-

>mRNA_E-siliculosus-1a_M_contig959.17547.1 ID=mRNA_E-siliculosus-1a_M_contig959.17547.1|Name=mRNA_E-siliculosus-1a_M_contig959.17547.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig959:1161..1340- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGGTTGCATATTCCTTGGTCGGCGTATCTTACCATGTTGCGCATGG
TGGGTCGCGGAAGAACCACTTCGTCACTCAACTGCGTGTCAGAGGAAGGT
GGCACAAGTATGACTGCCTGGCGGGAGGATCCGTAACTTCTTCAGACACC
TTCGATGACGACTGGAACAGCTCGTCCCAAATGGGGGTTGCATATTCCTT
GGTCGGCGTATCTTACCATGTTGCGCATGGTGGGTCGCGGAAGAACCACT
TCGTCACTCAACTGCGTGTCAGAGGAAGGTGGCACAAGTATGACTGCCTG
GCGGGAGGATCCGTAACTTCTTCAGACACCTTCGATGACGACTGGAACAG
CTCGTCCCAA
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