mRNA_E-siliculosus-1a_M_contig95.17524.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17524.1 vs. uniprot
Match: D7G1W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W8_ECTSI) HSP 1 Score: 439 bits (1129), Expect = 2.380e-152 Identity = 255/305 (83.61%), Postives = 260/305 (85.25%), Query Frame = 1 Query: 1 MAEVRRTQQSLSPEERRQSTRRHRVGVXXXXXXXXXXXXXKYGEGRGPRPLSRRSFLMSDDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGDKKNATGDWAGVDVENVIQVPGGSDLGDSDAGSRKTTVSAAPTTLSAADEALLGTFMEVLSEGELGLPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDMASLGS 915
MAEVRRTQQSLSPEERRQSTRRHRVGV XXXX KYG+GRGPRPLSRRSFLMSDDST XXXXXXXXX+KG+KKNATGDWAGVDVENV+QVPGGSDLGDSDAGSRKTTVSAAPTTLSAADEALLGTFMEVLSEG LPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDMAS+GS
Sbjct: 47 MAEVRRTQQSLSPEERRQSTRRHRVGVGTSGXXXXNSSGTKYGDGRGPRPLSRRSFLMSDDSTGGPPSPPREDSPLLGSRTERSPQSSSAGVLALAXXXXXXXXXQKGEKKNATGDWAGVDVENVVQVPGGSDLGDSDAGSRKTTVSAAPTTLSAADEALLGTFMEVLSEG---LPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDMASMGS 348
BLAST of mRNA_E-siliculosus-1a_M_contig95.17524.1 vs. uniprot
Match: A0A7S2V636_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V636_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 7.110e-9 Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 478 LLGTFMEVLSEGELGLPIKIHRTSKRARKTTLWLKGADT------------------LVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIK 843
L+ TF VL+EG L + +H +S ++++ LWL+G L W ++ S++ ++ L V V+ GK + L GSG ED C SL P++S+ FEA+S++ER+A+ QGFA+L+ DIK
Sbjct: 108 LVDTFRNVLAEG---LTMHLH-SSTQSKEVFLWLQGGPLPEDRGRRRSQSRAASPHLLCWRPTGSV-SRRAYQLDLSEVLFVEVGKQ-TPVLRTGSGAGVDEDHCLSLITPNMSVDFEASSKVEREAMAQGFALLINDIK 241 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17524.1 >prot_E-siliculosus-1a_M_contig95.17524.1 ID=prot_E-siliculosus-1a_M_contig95.17524.1|Name=mRNA_E-siliculosus-1a_M_contig95.17524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=306bp MAEVRRTQQSLSPEERRQSTRRHRVGVGTSGDGGGNGSGTKYGEGRGPRPback to top mRNA from alignment at E-siliculosus-1a_M_contig95:520944..523801+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17524.1 ID=mRNA_E-siliculosus-1a_M_contig95.17524.1|Name=mRNA_E-siliculosus-1a_M_contig95.17524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2858bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:520944..523801+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:520944..523801+ >mRNA_E-siliculosus-1a_M_contig95.17524.1 ID=mRNA_E-siliculosus-1a_M_contig95.17524.1|Name=mRNA_E-siliculosus-1a_M_contig95.17524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1836bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:520944..523801+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |