mRNA_E-siliculosus-1a_M_contig95.17524.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17524.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17524.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17524.1 vs. uniprot
Match: D7G1W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W8_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 2.380e-152
Identity = 255/305 (83.61%), Postives = 260/305 (85.25%), Query Frame = 1 
Query:    1 MAEVRRTQQSLSPEERRQSTRRHRVGVXXXXXXXXXXXXXKYGEGRGPRPLSRRSFLMSDDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGDKKNATGDWAGVDVENVIQVPGGSDLGDSDAGSRKTTVSAAPTTLSAADEALLGTFMEVLSEGELGLPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDMASLGS 915
            MAEVRRTQQSLSPEERRQSTRRHRVGV    XXXX     KYG+GRGPRPLSRRSFLMSDDST                                 XXXXXXXXX+KG+KKNATGDWAGVDVENV+QVPGGSDLGDSDAGSRKTTVSAAPTTLSAADEALLGTFMEVLSEG   LPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDMAS+GS
Sbjct:   47 MAEVRRTQQSLSPEERRQSTRRHRVGVGTSGXXXXNSSGTKYGDGRGPRPLSRRSFLMSDDSTGGPPSPPREDSPLLGSRTERSPQSSSAGVLALAXXXXXXXXXQKGEKKNATGDWAGVDVENVVQVPGGSDLGDSDAGSRKTTVSAAPTTLSAADEALLGTFMEVLSEG---LPIKIHRTSKRARKTTLWLKGADTLVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDMASMGS 348
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17524.1 vs. uniprot
Match: A0A7S2V636_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V636_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.110e-9
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 1 
Query:  478 LLGTFMEVLSEGELGLPIKIHRTSKRARKTTLWLKGADT------------------LVWSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLCFPSVSMGFEAASELERDALVQGFAMLVEDIK 843
            L+ TF  VL+EG   L + +H +S ++++  LWL+G                     L W    ++ S++ ++  L  V  V+ GK  +  L  GSG    ED C SL  P++S+ FEA+S++ER+A+ QGFA+L+ DIK
Sbjct:  108 LVDTFRNVLAEG---LTMHLH-SSTQSKEVFLWLQGGPLPEDRGRRRSQSRAASPHLLCWRPTGSV-SRRAYQLDLSEVLFVEVGKQ-TPVLRTGSGAGVDEDHCLSLITPNMSVDFEASSKVEREAMAQGFALLINDIK 241
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W8_ECTSI2.380e-15283.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V636_9STRA7.110e-934.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:520944..523801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size918
Model size918
Exons5
Ec32 orthologEc-07_003850.1
Ec32 ortholog descriptionPleckstrin homology-like domain
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17524.1prot_E-siliculosus-1a_M_contig95.17524.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 520944..523801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936521.2425168-CDS-E-siliculosus-1a_M_contig95:520943..5213131622936521.2425168-CDS-E-siliculosus-1a_M_contig95:520943..521313Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 520944..521313 +
1696251115.063182-CDS-E-siliculosus-1a_M_contig95:520943..5213131696251115.063182-CDS-E-siliculosus-1a_M_contig95:520943..521313Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 520944..521313 +
1622936521.2572463-CDS-E-siliculosus-1a_M_contig95:521806..5219561622936521.2572463-CDS-E-siliculosus-1a_M_contig95:521806..521956Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 521807..521956 +
1696251115.0718904-CDS-E-siliculosus-1a_M_contig95:521806..5219561696251115.0718904-CDS-E-siliculosus-1a_M_contig95:521806..521956Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 521807..521956 +
1622936521.2728207-CDS-E-siliculosus-1a_M_contig95:522493..5226451622936521.2728207-CDS-E-siliculosus-1a_M_contig95:522493..522645Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 522494..522645 +
1696251115.0830438-CDS-E-siliculosus-1a_M_contig95:522493..5226451696251115.0830438-CDS-E-siliculosus-1a_M_contig95:522493..522645Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 522494..522645 +
1622936521.2857912-CDS-E-siliculosus-1a_M_contig95:523383..5235001622936521.2857912-CDS-E-siliculosus-1a_M_contig95:523383..523500Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 523384..523500 +
1696251115.0970192-CDS-E-siliculosus-1a_M_contig95:523383..5235001696251115.0970192-CDS-E-siliculosus-1a_M_contig95:523383..523500Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 523384..523500 +
1622936521.2984753-CDS-E-siliculosus-1a_M_contig95:523672..5238011622936521.2984753-CDS-E-siliculosus-1a_M_contig95:523672..523801Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 523673..523801 +
1696251115.1082678-CDS-E-siliculosus-1a_M_contig95:523672..5238011696251115.1082678-CDS-E-siliculosus-1a_M_contig95:523672..523801Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 523673..523801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17524.1

>prot_E-siliculosus-1a_M_contig95.17524.1 ID=prot_E-siliculosus-1a_M_contig95.17524.1|Name=mRNA_E-siliculosus-1a_M_contig95.17524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=306bp
MAEVRRTQQSLSPEERRQSTRRHRVGVGTSGDGGGNGSGTKYGEGRGPRP
LSRRSFLMSDDSTGGPPSPPREDSPLLGSRTERPPRSSSAGVLALAGSDS
DDDEERKGDKKNATGDWAGVDVENVIQVPGGSDLGDSDAGSRKTTVSAAP
TTLSAADEALLGTFMEVLSEGELGLPIKIHRTSKRARKTTLWLKGADTLV
WSSKRAIGSKQWHKQSLGGVTSVQAGKGGSDSLIIGSGESAPEDSCFSLC
FPSVSMGFEAASELERDALVQGFAMLVEDIKAAADEQKYGDTEAAIFRDM
ASLGS*
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mRNA from alignment at E-siliculosus-1a_M_contig95:520944..523801+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17524.1 ID=mRNA_E-siliculosus-1a_M_contig95.17524.1|Name=mRNA_E-siliculosus-1a_M_contig95.17524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2858bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:520944..523801+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGGAGGTCAGGCGGACGCAACAATCGTTGAGTCCGGAAGAACGGCG
GCAATCGACTCGGCGGCACCGGGTGGGCGTGGGAACGAGTGGGGATGGAG
GCGGGAACGGCAGCGGGACGAAGTATGGGGAAGGCAGAGGGCCCCGGCCT
TTGTCGAGGCGCTCGTTTCTCATGTCCGACGATTCGACGGGCGGGCCGCC
GTCCCCCCCCCGAGAGGACTCCCCTCTGCTGGGCAGCAGGACTGAAAGGC
CGCCGCGGTCCTCGTCGGCCGGGGTGCTCGCCCTCGCTGGCAGCGACAGT
GACGACGACGAAGAACGAAAGGGAGATAAGAAGAACGCCACGGGCGACTG
GGCAGGCGTAGACGTGGAAAGTGAGTGGAGAAACAGGCGGAATAGATCAC
ACGCCTCTGAACGCCATCAGGACAAGAGCAGTGAACAACGAATGTCCTAC
CCCTGTGGAAAAGGACGCACCAGTGGAGGATAGCGCCGTCGTCAAGTTAG
ACTACTCACACCGGCGGGGTCTGATATCATCGTCACATCATGTCGAACCT
TTCCAAGCATCCCAGCTTGCTATCAACGCGTCCTTTCCGTAAATAACTCC
TTCTTGCGGTTACCATGTCAGCGCTAATTTGAACACGCGTTTTCCCTCTT
CTTAGTGATGGTGGTTATGTGATGTGAGTCGTTGTGTGCGTTTTTCCCGC
CGCAAACAATAATTAGGTAGAGGTATTTAAGGATAGTTCTTGCTGCCTTC
GGCCGAGAGAAAACGTGCGTCCGAGACTCAGGACAAGGAGCGGGGCTTTC
TCCTCAACGTTTGTGCGATTCTGTCGTGTACGCATGCAATACTGTCTTGC
ATGAACCTTGCAGATGTCATCCAAGTTCCTGGTGGCAGCGATCTCGGCGA
TAGCGACGCCGGCAGCAGGAAGACGACGGTTTCGGCCGCCCCCACCACCC
TCAGCGCGGCAGACGAGGCGTTGCTCGGCACCTTCATGGAAGTCTTATCA
GAGGGCGAGTTGGGTCTTCTCGTCACTGGTTACTGTTGTCATTGTTGTCT
TCATATCAGCAAACCGTTCTGGTTTCCTTACAGTACTTTCAGAACATGCG
TACTAAATCGTTCAAGGCTAACACAAAAATTTCCTTGATGACGCGCGTTA
ACCCTCAATCGCAATCAAGATAGACACGCGTGTGGCGAAACACGAGTTGT
TTCTGTACCAGAATAGATCCTACGAACATCTCCCGGACACCTCCTTTCCT
GTGATTCGCAACTTTGTGACCAGCAACCCGACGCCCTACAGCTCTTACAC
GGGCGAGGAACCCTCGCTCTGCTGCCGTTCGCTTTTTCTCTGCCCCCCGC
CCCACAACCTACCTACCTCAACACACACGCACCTTAGCCCCCCTCAGTTC
CTGTGACTTTCTGTGTCACGAATGGTGCTCAAGCTCTACATAGATTTTGA
TTTTTTCAGGCTCAATATCTCAACTTCCAAATTCTTAATGGGGGAGCCTT
CTGTACCTCTCGTCCCCCGACACCCACCCCCCTCCCGAAACTAAAAACAG
GACTCCCGATAAAGATCCACCGAACGTCCAAGCGGGCGAGGAAGACCACC
CTTTGGCTCAAGGGCGCCGACACGCTGGTGTGGTCCTCGAAGCGCGCCAT
CGGCTCGAAGCAGTGGCACAAGCAGAGCCTCGGAGGCGTGACTAGCGTGC
AGGTGTGTACTGTAGCGGCTGAGCGTACACCGCTACGAGAAGAGACATAT
GATACCGACCATCCATTTTGTCACAGCACAAGCAGGACAAAACCACCTTG
ACGATAGGTTAGGGATTCTGTGCTTTGGACAAGTTACAAACATTGGGAAG
GGGAACCGGGTGGGACGATGGAGGGGTGTGTGGAAAGGGAGAGGGCGAGG
GAATCCGTTGACCATACCTGAACGGATTTATGGAATGATGCTTCTTCTCG
ACAGAGCAATCAACTTTGAGTACCTCCACCAACCCACCTGCGCCGTGTAT
TTTCTCTTTTGTATCTTCTCGAATGCGATACGGTCCTTCGATCATCTGAT
ACAAGCGACGACGAAATCCAACTATTATGACGCTATGAACCGCGTGTTTG
TGCACGAAAAGGTTACGAACAAGCACGTACGCCCTCTCCCCTCTCTTTCC
TGACAAATGTTAGTCACATACAAATTTGTTGCTGTTGGTGTTGGTAAATT
GAATCCTTCACACTATCAGATACCCTGACCTCTATCGGCTATTGTACCAT
CCCTGCGCTTCGAAAAAAAGGCACAGACCGATGTGGTCACAGGCTCGCCT
AATGATACCATGCAGAAAAGGTGAACATTTGTTTTTTTTTCTGCCACGTT
GATTAAAGTTTCGTATGAACAATTTCACTACTACTCTTTGTTGCCTGCCC
TATTCACAAAATGCTTTTCGATCTGCTTGCTCCTCCGAAGGCCGGGAAGG
GTGGTTCCGACTCCCTGATCATCGGGTCCGGCGAGTCGGCCCCCGAGGAC
TCATGCTTCTCCCTGTGCTTCCCGTCCGTCTCGATGGGCTTCGAGGCGGC
AAGCGAGGTATGGGAAATCCGTTCCTTTGTTTCTTCTGCTGAACAGCAGT
GTTAATAACCAACACCATACGGCAACGCGCGCGCGCTGACAACCGAGAAC
CTAATTTTTTTTTGTGCTCTACTGCGTTGCTTCTTGTTCGTCTCCTTCGT
CTCATTCTCATTGCCAACGATCTTGGCAGCTGGAGCGAGACGCCCTCGTG
CAAGGGTTTGCGATGCTGGTGGAGGATATCAAGGCCGCGGCGGACGAGCA
GAAGTACGGCGACACCGAAGCGGCGATTTTCAGAGACATGGCATCGTTGG
GTTCTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:520944..523801+

>mRNA_E-siliculosus-1a_M_contig95.17524.1 ID=mRNA_E-siliculosus-1a_M_contig95.17524.1|Name=mRNA_E-siliculosus-1a_M_contig95.17524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1836bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:520944..523801+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGGAGGTCAGGCGGACGCAACAATCGTTGAGTCCGGAAGAACGGCG
GCAATCGACTCGGCGGCACCGGGTGGGCGTGGGAACGAGTGGGGATGGAG
GCGGGAACGGCAGCGGGACGAAGTATGGGGAAGGCAGAGGGCCCCGGCCT
TTGTCGAGGCGCTCGTTTCTCATGTCCGACGATTCGACGGGCGGGCCGCC
GTCCCCCCCCCGAGAGGACTCCCCTCTGCTGGGCAGCAGGACTGAAAGGC
CGCCGCGGTCCTCGTCGGCCGGGGTGCTCGCCCTCGCTGGCAGCGACAGT
GACGACGACGAAGAACGAAAGGGAGATAAGAAGAACGCCACGGGCGACTG
GGCAGGCGTAGACGTGGAAAATGGCGGAGGTCAGGCGGACGCAACAATCG
TTGAGTCCGGAAGAACGGCGGCAATCGACTCGGCGGCACCGGGTGGGCGT
GGGAACGAGTGGGGATGGAGGCGGGAACGGCAGCGGGACGAAGTATGGGG
AAGGCAGAGGGCCCCGGCCTTTGTCGAGGCGCTCGTTTCTCATGTCCGAC
GATTCGACGGGCGGGCCGCCGTCCCCCCCCCGAGAGGACTCCCCTCTGCT
GGGCAGCAGGACTGAAAGGCCGCCGCGGTCCTCGTCGGCCGGGGTGCTCG
CCCTCGCTGGCAGCGACAGTGACGACGACGAAGAACGAAAGGGAGATAAG
AAGAACGCCACGGGCGACTGGGCAGGCGTAGACGTGGAAAATGTCATCCA
AGTTCCTGGTGGCAGCGATCTCGGCGATAGCGACGCCGGCAGCAGGAAGA
CGACGGTTTCGGCCGCCCCCACCACCCTCAGCGCGGCAGACGAGGCGTTG
CTCGGCACCTTCATGGAAGTCTTATCAGAGGGCGAGTTGGATGTCATCCA
AGTTCCTGGTGGCAGCGATCTCGGCGATAGCGACGCCGGCAGCAGGAAGA
CGACGGTTTCGGCCGCCCCCACCACCCTCAGCGCGGCAGACGAGGCGTTG
CTCGGCACCTTCATGGAAGTCTTATCAGAGGGCGAGTTGGGACTCCCGAT
AAAGATCCACCGAACGTCCAAGCGGGCGAGGAAGACCACCCTTTGGCTCA
AGGGCGCCGACACGCTGGTGTGGTCCTCGAAGCGCGCCATCGGCTCGAAG
CAGTGGCACAAGCAGAGCCTCGGAGGCGTGACTAGCGTGCAGGACTCCCG
ATAAAGATCCACCGAACGTCCAAGCGGGCGAGGAAGACCACCCTTTGGCT
CAAGGGCGCCGACACGCTGGTGTGGTCCTCGAAGCGCGCCATCGGCTCGA
AGCAGTGGCACAAGCAGAGCCTCGGAGGCGTGACTAGCGTGCAGGCCGGG
AAGGGTGGTTCCGACTCCCTGATCATCGGGTCCGGCGAGTCGGCCCCCGA
GGACTCATGCTTCTCCCTGTGCTTCCCGTCCGTCTCGATGGGCTTCGAGG
CGGCAAGCGAGGCCGGGAAGGGTGGTTCCGACTCCCTGATCATCGGGTCC
GGCGAGTCGGCCCCCGAGGACTCATGCTTCTCCCTGTGCTTCCCGTCCGT
CTCGATGGGCTTCGAGGCGGCAAGCGAGCTGGAGCGAGACGCCCTCGTGC
AAGGGTTTGCGATGCTGGTGGAGGATATCAAGGCCGCGGCGGACGAGCAG
AAGTACGGCGACACCGAAGCGGCGATTTTCAGAGACATGGCATCGTTGGG
TTCTTGACTGGAGCGAGACGCCCTCGTGCAAGGGTTTGCGATGCTGGTGG
AGGATATCAAGGCCGCGGCGGACGAGCAGAAGTACGGCGACACCGAAGCG
GCGATTTTCAGAGACATGGCATCGTTGGGTTCTTGA
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