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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17517.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI) HSP 1 Score: 935 bits (2416), Expect = 0.000e+0 Identity = 486/538 (90.33%), Postives = 503/538 (93.49%), Query Frame = 1 Query: 88 MAMVRAAASAXXXXSDATEWAEGLGGGQGDNPGRPGRQTCWAVWHEELAVFEVPQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKSYDPTGTASPAAPSSGIGRKDDARGMHDETDISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSAAGKNACPIPPRAELSPIDSGVILTGEPQHSLDPVAFGETAWTGQGGGCRKAPIAAKEGRQRAGCKRSRPGQGRGERVVRPAPALSVSVSTLHETVLSRAGVPWECYRAYAELKRRSYVVRRQPEDTVGHDETAPRAAPLSWFQGTGATTTSNNKLITAASHTSSPSSSLPVTFHVYNNPSGCSSSFRKRDPGPPDALLVVCRFGEPMPDHRSLVALVELHANMQMEMSTSQQWRRRGREDRTAGVVSGLGPDEATPDRDSGSQEVPTSGLESERVTSSGGQESGQKGSLLDEDRQNRQAGTVPDQEKGLDGGRTRGRLTTEGGESSTLALSEGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELSS 1701
MAMVRA ASA S ATEWAEGLGGGQGD+PGRPGRQTCWAVWHEELAVFEV QPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKK++DPTGTASPAAPSSGIGRK+DAR MHDET ISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDS+AGKNA PIPPRAELSPIDSGVILTGE QHSLDPVA GETA TGQGGGCRK P AAKEGRQRAGCKRSRPGQGRGERVVRPA ALSVSVSTL+E VL+RAGVPWECYR YAELKRRSYVVRRQPEDTVGHD+TAPRAAPLSWFQGTGAT TSNNKLITAA+HTSSPSSSLPVTFHVY+NPSGCSSSFRKRDPGPPDAL+VVCRFG+PMPDHRSLVALVELHANMQM+MS SQQWRRRGRED TAGVVS LGPDEA PDR SGS EVPTSGLESERVTS GG+ESGQKGSLLDEDRQ RQA T+PDQ+KGLDGGRTRGRLTTEG TLA S+GVEKLSTPGIKLAVVSGEAQVQLFDVGLHDA EAAEL S
Sbjct: 1 MAMVRATASASAASSAATEWAEGLGGGQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAELSPIDSGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSPSSSLPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQQWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSLLDEDRQKRQARTLPDQKKGLDGGRTRGRLTTEGSGGRTLAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDALEAAELPS 538
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1617 |
| Model size | 2042 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog | Ec-07_003920.2 |
| Ec32 ortholog description | tRNA-splicing endonuclease, subunit Sen54, N-terminal |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936519.9629486-UTR-E-siliculosus-1a_M_contig95:470341..470428 | 1622936519.9629486-UTR-E-siliculosus-1a_M_contig95:470341..470428 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 470342..470428 + |
| 1696251114.5594952-UTR-E-siliculosus-1a_M_contig95:470341..470428 | 1696251114.5594952-UTR-E-siliculosus-1a_M_contig95:470341..470428 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 470342..470428 + |
| 1622936520.0291548-UTR-E-siliculosus-1a_M_contig95:472379..472717 | 1622936520.0291548-UTR-E-siliculosus-1a_M_contig95:472379..472717 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 472380..472717 + |
| 1696251114.6058633-UTR-E-siliculosus-1a_M_contig95:472379..472717 | 1696251114.6058633-UTR-E-siliculosus-1a_M_contig95:472379..472717 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 472380..472717 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936519.9796064-CDS-E-siliculosus-1a_M_contig95:470428..470620 | 1622936519.9796064-CDS-E-siliculosus-1a_M_contig95:470428..470620 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 470429..470620 + |
| 1696251114.5707922-CDS-E-siliculosus-1a_M_contig95:470428..470620 | 1696251114.5707922-CDS-E-siliculosus-1a_M_contig95:470428..470620 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 470429..470620 + |
| 1622936519.9974365-CDS-E-siliculosus-1a_M_contig95:470763..471416 | 1622936519.9974365-CDS-E-siliculosus-1a_M_contig95:470763..471416 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 470764..471416 + |
| 1696251114.581126-CDS-E-siliculosus-1a_M_contig95:470763..471416 | 1696251114.581126-CDS-E-siliculosus-1a_M_contig95:470763..471416 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 470764..471416 + |
| 1622936520.0149271-CDS-E-siliculosus-1a_M_contig95:471607..472379 | 1622936520.0149271-CDS-E-siliculosus-1a_M_contig95:471607..472379 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 471608..472379 + |
| 1696251114.5940976-CDS-E-siliculosus-1a_M_contig95:471607..472379 | 1696251114.5940976-CDS-E-siliculosus-1a_M_contig95:471607..472379 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 471608..472379 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17517.1 >prot_E-siliculosus-1a_M_contig95.17517.1 ID=prot_E-siliculosus-1a_M_contig95.17517.1|Name=mRNA_E-siliculosus-1a_M_contig95.17517.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=539bp
MAMVRAAASAAAASSDATEWAEGLGGGQGDNPGRPGRQTCWAVWHEELAV
FEVPQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKS
YDPTGTASPAAPSSGIGRKDDARGMHDETDISSSTPEIAQEMRNIEHEEK
ENEGGGQEGLTDDVDSAAGKNACPIPPRAELSPIDSGVILTGEPQHSLDP
VAFGETAWTGQGGGCRKAPIAAKEGRQRAGCKRSRPGQGRGERVVRPAPA
LSVSVSTLHETVLSRAGVPWECYRAYAELKRRSYVVRRQPEDTVGHDETA
PRAAPLSWFQGTGATTTSNNKLITAASHTSSPSSSLPVTFHVYNNPSGCS
SSFRKRDPGPPDALLVVCRFGEPMPDHRSLVALVELHANMQMEMSTSQQW
RRRGREDRTAGVVSGLGPDEATPDRDSGSQEVPTSGLESERVTSSGGQES
GQKGSLLDEDRQNRQAGTVPDQEKGLDGGRTRGRLTTEGGESSTLALSEG
VEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELSS* back to topmRNA from alignment at E-siliculosus-1a_M_contig95:470342..472717+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17517.1 ID=mRNA_E-siliculosus-1a_M_contig95.17517.1|Name=mRNA_E-siliculosus-1a_M_contig95.17517.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2376bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:470342..472717+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTTTCGGCACCCGGCAGCAACGCCAGGAAGGGGAGCTCGCTCCTCAGGGC
ACCAATAGGTGCTGCTGAAACAGTTCACTTGAAACCCATGGCTATGGTAA
GGGCTGCTGCTTCAGCCGCTGCTGCTAGTAGTGATGCCACAGAGTGGGCG
GAGGGCCTTGGAGGAGGACAAGGAGACAATCCTGGACGTCCCGGGAGGCA
GACGTGCTGGGCTGTCTGGCACGAAGAGCTGGCAGTGTTTGAGGTTCCGC
AGCCCCGAGGCGACTCGCTGAGATCCATGGTGAGGATGTATAAATGTGTG
TACATGGGGCTGTAGACTACAACAAGACCTATGCATACATGCCGCTGAAT
TCAGGTTCCATGTGATTGAACCCTTTCCACGTGTTATCCTCTTACACTTC
CCATTGTAACATGACATTTTAGGGGACGACCTGGCGCAGCAGGCTAATGT
TGCACGCAGAGGAAGGTCTCTGGCTGGTCGAGCGTGGCATGCTGGCCGTC
CACCCTTTTTCTCCAGCCCCGAAGAAAAGCTACGATCCCACCGGCACGGC
CTCGCCCGCAGCACCGTCGTCGGGGATAGGGCGAAAAGACGACGCGAGGG
GAATGCATGATGAGACCGATATCAGCAGCTCTACGCCGGAGATTGCGCAA
GAGATGAGAAACATCGAGCACGAAGAGAAGGAAAATGAGGGAGGCGGGCA
GGAAGGGCTTACTGATGACGTTGATTCGGCCGCTGGAAAGAACGCCTGTC
CAATTCCACCGAGGGCTGAGCTGTCGCCAATAGACAGCGGGGTGATACTC
ACGGGAGAACCCCAACACTCGCTAGACCCTGTCGCATTCGGAGAAACTGC
GTGGACGGGACAAGGGGGTGGCTGCCGAAAAGCACCAATCGCCGCCAAGG
AGGGACGGCAAAGGGCGGGCTGTAAACGGAGCCGGCCGGGGCAGGGTAGG
GGTGAGCGGGTCGTGCGACCTGCCCCCGCCCTGTCCGTGTCGGTCAGCAC
GCTCCATGAAACGGTATTGTCGCGGGCTGGTGTGCCGTGGGAGTGTTATC
GCGCCTACGCGGAGCTTAAACGAAGGTACGTGATCTTTGTGCCTTCGCGG
GTGGAGAGGTGTGGTGGTGGTATGCAGGCTGTAAGGGTGGCTACATACGA
CGGAGGGTGTTAGTGGTGTTAGTGTTGGTGCTGGTGCTTCTATGGTGATG
AGGACGTAACGTTTCGAAAACGTGGACACAACCCGATGACAACTTGTTCC
TCGTATTGTAAAACAGGTCGTACGTGGTCAGGCGTCAACCGGAGGACACC
GTCGGACACGACGAAACCGCTCCTAGAGCGGCACCTCTGTCTTGGTTTCA
AGGCACAGGCGCCACCACAACGAGCAACAACAAACTTATCACAGCTGCGA
GCCACACCTCGTCACCGTCCTCCTCCTTGCCGGTGACGTTCCATGTCTAC
AATAACCCGTCGGGCTGCTCCTCCTCGTTCCGCAAGCGTGACCCTGGGCC
CCCTGACGCTCTCCTCGTGGTGTGCCGCTTCGGGGAGCCCATGCCGGACC
ACCGCTCGCTCGTGGCCCTCGTCGAACTCCACGCCAACATGCAGATGGAA
ATGAGCACGTCCCAACAATGGCGAAGGCGAGGGCGAGAGGACAGGACAGC
TGGAGTTGTGTCGGGTTTAGGCCCAGACGAAGCAACGCCCGATCGGGACA
GTGGAAGCCAGGAAGTTCCCACCAGTGGCCTTGAATCAGAGCGTGTGACA
TCCAGCGGAGGCCAAGAATCGGGGCAGAAAGGCAGCTTGTTGGACGAGGA
CCGGCAAAACCGACAGGCCGGGACGGTGCCGGATCAAGAAAAGGGGTTAG
ATGGGGGAAGGACGCGGGGGAGACTTACCACCGAAGGCGGTGAAAGCAGT
ACGTTGGCGTTGTCAGAAGGAGTTGAGAAGTTGTCGACGCCAGGAATAAA
GTTGGCGGTCGTGTCGGGGGAGGCGCAAGTGCAACTGTTTGACGTTGGTC
TGCATGATGCCCGTGAGGCCGCAGAACTCTCCTCTTGAAGCCGAGCAGCT
GCTGCCGGTGGATGCTATGCTATCCTTGTGCGGTCCCAAACACGCGTCGA
AAATCTCCTTGAATTTCGGACCGGAATTAAAATGTGAATCATTCCCACTA
CCACGCGACAATATGCAGCGGAGGTATGATGATGCTTTGGTGGAATTTTG
GAACATGTTTTTAACCGTGTTGGAGTGTTCGGTCTCTGGGTGATATCCTT
GGCCGCTGCCGTGACCTCCTTTGTCGTTCTCTTTGGTGCTTTCCTGCTGC
TCAGCAGACTCCAGCCGCCCATGGTGCTGATCATTCTCCATTTTGAAGAG
GCGTCAGGTCATGTTTCAGAACGCGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:470342..472717+ >mRNA_E-siliculosus-1a_M_contig95.17517.1 ID=mRNA_E-siliculosus-1a_M_contig95.17517.1|Name=mRNA_E-siliculosus-1a_M_contig95.17517.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:470342..472717+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTATGGTAAGGGCTGCTGCTTCAGCCGCTGCTGCTAGTAGTGATGC
CACAGAGTGGGCGGAGGGCCTTGGAGGAGGACAAGGAGACAATCCTGGAC
GTCCCGGGAGGCAGACGTGCTGGGCTGTCTGGCACGAAGAGCTGGCAGTG
TTTGAGGTTCCGCAGCCCCGAGGCGACTCGCTGAGATCCATGATGGCTAT
GGTAAGGGCTGCTGCTTCAGCCGCTGCTGCTAGTAGTGATGCCACAGAGT
GGGCGGAGGGCCTTGGAGGAGGACAAGGAGACAATCCTGGACGTCCCGGG
AGGCAGACGTGCTGGGCTGTCTGGCACGAAGAGCTGGCAGTGTTTGAGGT
TCCGCAGCCCCGAGGCGACTCGCTGAGATCCATGGGGACGACCTGGCGCA
GCAGGCTAATGTTGCACGCAGAGGAAGGTCTCTGGCTGGTCGAGCGTGGC
ATGCTGGCCGTCCACCCTTTTTCTCCAGCCCCGAAGAAAAGCTACGATCC
CACCGGCACGGCCTCGCCCGCAGCACCGTCGTCGGGGATAGGGCGAAAAG
ACGACGCGAGGGGAATGCATGATGAGACCGATATCAGCAGCTCTACGCCG
GAGATTGCGCAAGAGATGAGAAACATCGAGCACGAAGAGAAGGAAAATGA
GGGAGGCGGGCAGGAAGGGCTTACTGATGACGTTGATTCGGCCGCTGGAA
AGAACGCCTGTCCAATTCCACCGAGGGCTGAGCTGTCGCCAATAGACAGC
GGGGTGATACTCACGGGAGAACCCCAACACTCGCTAGACCCTGTCGCATT
CGGAGAAACTGCGTGGACGGGACAAGGGGGTGGCTGCCGAAAAGCACCAA
TCGCCGCCAAGGAGGGACGGCAAAGGGCGGGCTGTAAACGGAGCCGGCCG
GGGCAGGGTAGGGGTGAGCGGGTCGTGCGACCTGCCCCCGCCCTGTCCGT
GTCGGTCAGCACGCTCCATGAAACGGTATTGTCGCGGGCTGGTGTGCCGT
GGGAGTGTTATCGCGCCTACGCGGAGCTTAAACGAAGGGGACGACCTGGC
GCAGCAGGCTAATGTTGCACGCAGAGGAAGGTCTCTGGCTGGTCGAGCGT
GGCATGCTGGCCGTCCACCCTTTTTCTCCAGCCCCGAAGAAAAGCTACGA
TCCCACCGGCACGGCCTCGCCCGCAGCACCGTCGTCGGGGATAGGGCGAA
AAGACGACGCGAGGGGAATGCATGATGAGACCGATATCAGCAGCTCTACG
CCGGAGATTGCGCAAGAGATGAGAAACATCGAGCACGAAGAGAAGGAAAA
TGAGGGAGGCGGGCAGGAAGGGCTTACTGATGACGTTGATTCGGCCGCTG
GAAAGAACGCCTGTCCAATTCCACCGAGGGCTGAGCTGTCGCCAATAGAC
AGCGGGGTGATACTCACGGGAGAACCCCAACACTCGCTAGACCCTGTCGC
ATTCGGAGAAACTGCGTGGACGGGACAAGGGGGTGGCTGCCGAAAAGCAC
CAATCGCCGCCAAGGAGGGACGGCAAAGGGCGGGCTGTAAACGGAGCCGG
CCGGGGCAGGGTAGGGGTGAGCGGGTCGTGCGACCTGCCCCCGCCCTGTC
CGTGTCGGTCAGCACGCTCCATGAAACGGTATTGTCGCGGGCTGGTGTGC
CGTGGGAGTGTTATCGCGCCTACGCGGAGCTTAAACGAAGGTCGTACGTG
GTCAGGCGTCAACCGGAGGACACCGTCGGACACGACGAAACCGCTCCTAG
AGCGGCACCTCTGTCTTGGTTTCAAGGCACAGGCGCCACCACAACGAGCA
ACAACAAACTTATCACAGCTGCGAGCCACACCTCGTCACCGTCCTCCTCC
TTGCCGGTGACGTTCCATGTCTACAATAACCCGTCGGGCTGCTCCTCCTC
GTTCCGCAAGCGTGACCCTGGGCCCCCTGACGCTCTCCTCGTGGTGTGCC
GCTTCGGGGAGCCCATGCCGGACCACCGCTCGCTCGTGGCCCTCGTCGAA
CTCCACGCCAACATGCAGATGGAAATGAGCACGTCCCAACAATGGCGAAG
GCGAGGGCGAGAGGACAGGACAGCTGGAGTTGTGTCGGGTTTAGGCCCAG
ACGAAGCAACGCCCGATCGGGACAGTGGAAGCCAGGAAGTTCCCACCAGT
GGCCTTGAATCAGAGCGTGTGACATCCAGCGGAGGCCAAGAATCGGGGCA
GAAAGGCAGCTTGTTGGACGAGGACCGGCAAAACCGACAGGCCGGGACGG
TGCCGGATCAAGAAAAGGGGTTAGATGGGGGAAGGACGCGGGGGAGACTT
ACCACCGAAGGCGGTGAAAGCAGTACGTTGGCGTTGTCAGAAGGAGTTGA
GAAGTTGTCGACGCCAGGAATAAAGTTGGCGGTCGTGTCGGGGGAGGCGC
AAGTGCAACTGTTTGACGTTGGTCTGCATGATGCCCGTGAGGCCGCAGAA
CTCTCCTCTTGAGTCGTACGTGGTCAGGCGTCAACCGGAGGACACCGTCG
GACACGACGAAACCGCTCCTAGAGCGGCACCTCTGTCTTGGTTTCAAGGC
ACAGGCGCCACCACAACGAGCAACAACAAACTTATCACAGCTGCGAGCCA
CACCTCGTCACCGTCCTCCTCCTTGCCGGTGACGTTCCATGTCTACAATA
ACCCGTCGGGCTGCTCCTCCTCGTTCCGCAAGCGTGACCCTGGGCCCCCT
GACGCTCTCCTCGTGGTGTGCCGCTTCGGGGAGCCCATGCCGGACCACCG
CTCGCTCGTGGCCCTCGTCGAACTCCACGCCAACATGCAGATGGAAATGA
GCACGTCCCAACAATGGCGAAGGCGAGGGCGAGAGGACAGGACAGCTGGA
GTTGTGTCGGGTTTAGGCCCAGACGAAGCAACGCCCGATCGGGACAGTGG
AAGCCAGGAAGTTCCCACCAGTGGCCTTGAATCAGAGCGTGTGACATCCA
GCGGAGGCCAAGAATCGGGGCAGAAAGGCAGCTTGTTGGACGAGGACCGG
CAAAACCGACAGGCCGGGACGGTGCCGGATCAAGAAAAGGGGTTAGATGG
GGGAAGGACGCGGGGGAGACTTACCACCGAAGGCGGTGAAAGCAGTACGT
TGGCGTTGTCAGAAGGAGTTGAGAAGTTGTCGACGCCAGGAATAAAGTTG
GCGGTCGTGTCGGGGGAGGCGCAAGTGCAACTGTTTGACGTTGGTCTGCA
TGATGCCCGTGAGGCCGCAGAACTCTCCTCTTGA back to top
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