mRNA_E-siliculosus-1a_M_contig95.17516.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17516.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17516.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 6.650e-73
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG
Sbjct:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 102
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.080e-50
Identity = 72/102 (70.59%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            M  M  DW  MWGAKVK+P DM DD+L+DAI+T R+ LD C DFEAEGLA+AEKIK+H D +WDP WHV+IGRNFGSFVTHET  F+YFY+ DKA+MMYKAG
Sbjct:    1 MPSMGDDWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKAG 102
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.280e-43
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE VP+W  MWGAKVK P D+ DDML+DAI T +  +    DFEAEG+  AEKIK+ FD RW P WHVIIG+NFGSFVTHET  F+YFY  DKA+M+YKAG
Sbjct:    1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKAG 102
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.790e-43
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   13 VPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            + +W+ MWGA+VK+P DM DDML+DA+ET R   +   DFE +GL AAE IK  FD +W P+WHV++GR FGSFVTHET CFVYFYL DKA+MMYKAG
Sbjct:    6 IQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKAG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.850e-38
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 MGEMVP-DWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P +W  MWGAKVK P+D+ DDML DAI   R AL+   D+E+EG A  +K+KK FD +W P WH ++G NFGSFVTHE   FVYFY+ADKA++++KAG
Sbjct:    1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKAG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM)

HSP 1 Score: 119 bits (299), Expect = 4.280e-33
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGAKVKMP DM DD+L DAI+  T R       ++E  GLA  E+IK H D  WDP W V IGRNFGSFVTH T  FV+FY  +KA+M+YKAG
Sbjct:    1 MGE-APSWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVTRNFVFFYYNEKAVMIYKAG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.280e-33
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P+W  MWGAKVKMP DM DD+L DAI+  T R A     ++E +GL   E+IK H D  W+P W V IGRNFGS+VTH T  FVYFY  +KA+M+YKAG
Sbjct:    1 MGE-APNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVTRNFVYFYFNEKAVMVYKAG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.790e-32
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE V +W  +WGAKVK P +M DD+L+DAI T  + L  C +FE+ G  A + IK H D +W P W   IGRNFGS V+HET  FV+FY  DKA+M+YK G
Sbjct:    3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYKIG 104
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: K3WRF9_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRF9_GLOUD)

HSP 1 Score: 116 bits (291), Expect = 7.070e-32
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGAKVKMP DM DD+L D I+  T R A     ++E +GLA  E++K H D  W+P W V IGRNFGS+VTH T  FV+FY  +KAIM+YKAG
Sbjct:    1 MGE-APSWQYMWGAKVKMPCDMEDDVLEDVIKHVTTRLAKFDTEEWEKKGLAVCEELKAHMDTLWEPHWVVCIGRNFGSYVTHVTRNFVFFYYNEKAIMVYKAG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A1V9ZER7_9STRA (Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZER7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.020e-31
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDH--CADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGA+VK P DM DD+L D I+     L+     ++E +GLA  E+I+ H D  WDP+W V IGRNFGS+VTH T  FVYFY  +KAI++YKAG
Sbjct:    1 MGE-APSWQNMWGARVKTPCDMEDDVLEDVIKYVTQRLEQFDTEEWEKQGLAVCEEIRDHLDKAWDPAWVVCIGRNFGSYVTHVTRNFVYFYYNEKAILIYKAG 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V9_ECTSI6.650e-73100.00Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CJA1_9STRA5.080e-5070.59Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2W886_9STRA1.280e-4365.69Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1TPD3_9STRA3.790e-4364.29Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1CI82_9STRA2.850e-3858.25Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
H3GHN7_PHYRM4.280e-3358.65Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A5D6XID8_9STRA4.280e-3357.69Dynein light chain n=1 Tax=Pythium brassicum TaxID... [more]
A0A7S2WLS4_9STRA1.790e-3253.92Dynein light chain n=1 Tax=Eucampia antarctica Tax... [more]
K3WRF9_GLOUD7.070e-3256.73Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
A0A1V9ZER7_9STRA2.020e-3153.85Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:466439..468289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Cds size309
Start1
Stop1
Model size309
Exons3
Ec32 orthologEc-07_003930.1
Ec32 ortholog descriptionDynein light chain, type 1/2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG3430@1,KOG3430@2759
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
KEGG Pathwayko04962,map04962
KEGG koko:K10418
Seed eggNOG ortholog2880.D7G1V9
Seed ortholog evalue3.2e-55
Seed ortholog score220.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17516.1prot_E-siliculosus-1a_M_contig95.17516.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 466439..468289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936519.8554313-CDS-E-siliculosus-1a_M_contig95:466438..4665801622936519.8554313-CDS-E-siliculosus-1a_M_contig95:466438..466580Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 466439..466580 +
1696251114.5242205-CDS-E-siliculosus-1a_M_contig95:466438..4665801696251114.5242205-CDS-E-siliculosus-1a_M_contig95:466438..466580Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 466439..466580 +
1622936519.8725803-CDS-E-siliculosus-1a_M_contig95:466995..4671041622936519.8725803-CDS-E-siliculosus-1a_M_contig95:466995..467104Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 466996..467104 +
1696251114.538104-CDS-E-siliculosus-1a_M_contig95:466995..4671041696251114.538104-CDS-E-siliculosus-1a_M_contig95:466995..467104Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 466996..467104 +
1622936519.8873098-CDS-E-siliculosus-1a_M_contig95:468231..4682891622936519.8873098-CDS-E-siliculosus-1a_M_contig95:468231..468289Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 468232..468289 +
1696251114.548869-CDS-E-siliculosus-1a_M_contig95:468231..4682891696251114.548869-CDS-E-siliculosus-1a_M_contig95:468231..468289Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 468232..468289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17516.1

>prot_E-siliculosus-1a_M_contig95.17516.1 ID=prot_E-siliculosus-1a_M_contig95.17516.1|Name=mRNA_E-siliculosus-1a_M_contig95.17516.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=103bp
MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLA
AAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYK
AG*
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mRNA from alignment at E-siliculosus-1a_M_contig95:466439..468289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17516.1 ID=mRNA_E-siliculosus-1a_M_contig95.17516.1|Name=mRNA_E-siliculosus-1a_M_contig95.17516.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1851bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:466439..468289+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAGAAATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAA
GATGCCAACAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACAT
GCAGGGATGCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGGTACTTCA
AAATACTGCACACCAGACAGGCCGCTTATCGATTGGGTTGCATAGCAATC
AACGCTACAGAAAACGGACGTAGACGTTGATATTGCCAGTAGCGTGAGGT
CATGCGTCATACAACTTCACGATATAGCAAACGTAAAAGGTTCTTCTGGA
CTGAAATAAGCGTTTGGTTGACACTACATGTTATCGCGTGGGCACGAAAT
TGCTTCCAGGAAGAGCAGAAGTAATCCTCTGCCTAAGCTTTTAGACTATC
GATGATGAGAGAGAGAGTCTGAAGACCGCCAAAGTACTCGTTATCCCTTT
TAATTTTCTGTTTTTATGTGAGAAGAGAATTGTTCCTGAAGCGCTTGCGA
GAGACTCCAACGGTATTTTCCCTTTCCAAACAATTGAGTTGCACGCTTTC
AAAACAGGACTAGCCGCAGCAGAGAAGATCAAAAAGCATTTCGACGCGCG
GTGGGACCCCAGCTGGCATGTCATAATCGGTCGAAATTTCGGCTCTTTCG
TGACGCACGAAACAACGTGAGTCTTCTCTGTTGCAGTCTGTCTAGATACG
GAACGGAAACGCCTACACTGTAGCTAGCAACAGGTGTACAATCAATGACG
CGTGCAAGCATCTATTGAGGGGGGCAAGACTTGTACTGCGTAGATCTTTC
TATGTAGGGAACGCTCGTTGGTTCGCTGCGGAGAGTATCGCCATCATGGA
GGCAGCGTGATTGACGCCATTGACGCCATTGACCAACTACCAACTTTACG
GCGATGACCGCATCCTACCTCACGACAACCTGGATCCACTTGGTATGGCT
CCAATGCTGAGGATAGGTTTGTTTCGCCAAAGGTGTTATCGTCTTGGCTC
CCGTCACCGCCTCCACTGTTTTTCACGTGAAAGGGGCTTCATGTCATACA
ATCCGTAGTTCGAACAGAAGCGTACGGGAGACATGATTTTAGACGCGTTG
CTTTTACTCTTCAACGCAAAAAAGACTACAGTAGCAGCATATTTCCGGAC
ACGTTACCACCTCCCGTGCATCTCCCTCCCTCCTTCTCCCTCGGGAGGAC
GAAAACTAGGATGGCCTTTTGATTGCGTTGTGCCCTGATCGTGTATGGTT
CTTCCCGTGGTATATCTCACTCGGGTCTTTCGGTTTGAGGATCTGGCGGG
TGGTGCATGCGACACAGAGCCCTTGCTAGACACTGAGCTCCACTGGGCGA
CGACACAACATCGTATACCTACTCAACAGATGTTCGAACATGTATTTTAG
GCCCTGAAGCGGCGTGACATCTTCATCTTTCCACAGGGGCAGAGAAACTG
GTATCCTGGTACCGTACCGAAAGGATTGGTTTGGTTTGGTTGCCATCCAG
GCTACTGGGACGACGTCCCTGAAACATATTCAGGACGAAGAGTAAATAGC
TGGCAGTTCTGGGGTCTTCAGCTATTGCCTTTCTTCCCGCCATTGACCTG
GATTGTTTTTTCTCGGGGCTTGCTTGTCCTGAACGAGGAGAGCTTAACCA
CTATGTTCGCCTAATCAAAACGGTAATTTGATGGTTGTGCTAAGGCACGA
CCTCCCCCCGCGCGCGCGCCACTCATTCCGTTTTCCTCTTGACTCCCGCG
CTTGCTATGAATCTGGCATCTCCATCTCTCCCTCGCACGAAAGGTGTTTC
GTTTACTTCTACTTGGCAGACAAAGCGATCATGATGTACAAAGCCGGCTG
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:466439..468289+

>mRNA_E-siliculosus-1a_M_contig95.17516.1 ID=mRNA_E-siliculosus-1a_M_contig95.17516.1|Name=mRNA_E-siliculosus-1a_M_contig95.17516.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:466439..468289+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAGAAATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAA
GATGCCAACAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACAT
GCAGGGATGCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGATGGGAGA
AATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAAGATGCCAA
CAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACATGCAGGGAT
GCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGGACTAGCCGCAGCAGA
GAAGATCAAAAAGCATTTCGACGCGCGGTGGGACCCCAGCTGGCATGTCA
TAATCGGTCGAAATTTCGGCTCTTTCGTGACGCACGAAACAACGACTAGC
CGCAGCAGAGAAGATCAAAAAGCATTTCGACGCGCGGTGGGACCCCAGCT
GGCATGTCATAATCGGTCGAAATTTCGGCTCTTTCGTGACGCACGAAACA
ACGTGTTTCGTTTACTTCTACTTGGCAGACAAAGCGATCATGATGTACAA
AGCCGGCTGAGTGTTTCGTTTACTTCTACTTGGCAGACAAAGCGATCATG
ATGTACAAAGCCGGCTGA
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