prot_E-siliculosus-1a_M_contig95.17482.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17482.1
Unique Nameprot_E-siliculosus-1a_M_contig95.17482.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length389
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17482.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 1.000e-152
Identity = 303/344 (88.08%), Postives = 307/344 (89.24%), Query Frame = 0 
Query:   48 MLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDDAVSTRPPXXXXX---RPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSTVADAAGTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGADQSASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKAFEFSFGKSEAXXXXXXXXVGDSTGDGNDGRGVDDVEFGREGCAP 388
            MLERRVDGGYQIFSPEIERDSPIAAQ GVVARTYERPRGRSLPKWDRTDDAVSTRP  XXXX   RPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPS  ADA GTG+                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGA Q+ASGHCGSATAASA+ALGGGWEAGDEWQGFGSGSFGQESPVNCS RQPTKAFEF+FG SEA XXXXXX VGDSTGDGNDGRGVDDVEFGREGCAP
Sbjct:    1 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRHDDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFGQESPVNCSSRQPTKAFEFAFGNSEAGXXXXXX-VGDSTGDGNDGRGVDDVEFGREGCAP 343
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17482.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 2.470e-132
Identity = 294/351 (83.76%), Postives = 302/351 (86.04%), Query Frame = 0 
Query:   38 QNKVGGVIVGMLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDDAVSTRPPXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSTVADAAGTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGADQSASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKAFEFSFGKSEAXXXXXXXXVGDSTGDGNDGRGVDDVEFGREGCAP 388
            + KVGGVIVGMLERRVDGGYQIFSPEIERDSPIAAQ GVVARTYERPRGRSLPKWDR+DDAVSTRP      RPASKLGL+GSGFS QPWNCPACTYLNEDPAFRAACEICNTPRPS             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPPQIEACIPSGFSVGGGEAGGLP     V+DNEVDGILGG+SPGGGAFPVVS  DQ+ S HCGSATAASA+ALGG WEAGDEWQGFGSGSFGQESPV CSPRQP  AFEFSF  SEA        V D  GDGNDGRGVD+VEFGREGCAP
Sbjct:  809 KKKVGGVIVGMLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRSDDAVSTRPLPPPPPRPASKLGLVGSGFSHQPWNCPACTYLNEDPAFRAACEICNTPRPSAAXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPQIEACIPSGFSVGGGEAGGLPVGGIEVEDNEVDGILGGISPGGGAFPVVSSTDQAESRHCGSATAASAAALGGSWEAGDEWQGFGSGSFGQESPVKCSPRQPATAFEFSFRNSEAGGGG----VDDGAGDGNDGRGVDNVEFGREGCAP 1148
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17482.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1S7_ECTSI1.000e-15288.08RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBW0_9PHAE2.470e-13283.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 125..151
e-value: 0.0023
score: 27.2
NoneNo IPR availableGENE3D2.20.28.140coord: 120..162
e-value: 1.4E-7
score: 33.2
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 123..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:182807..184873 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17482.1mRNA_E-siliculosus-1a_M_contig95.17482.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig95 181910..186690 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig95.17482.1 ID=prot_E-siliculosus-1a_M_contig95.17482.1|Name=mRNA_E-siliculosus-1a_M_contig95.17482.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=389bp
MSRDHAALGFGVSYHCYFFFAFYPHVRDVPSPFFHFPQNKVGGVIVGMLE
RRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDDAVS
TRPPPPPPPRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNT
PRPSTVADAAGTGSGGGGGEQRYDDWDDNEVLKSCGGGGSRGGGGIPATA
SAMMSSFSPAAPPAVAAGGGPTAFASSVAAGAGAVAPPPQIEACIPSGFS
VGGGEAGGLPVGGIEVDDNEVDGILGGVSPGGGAFPVVSGADQSASGHCG
SATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKAFEFSFG
KSEAGGGGGGGGVGDSTGDGNDGRGVDDVEFGREGCAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001876Znf_RanBP2