Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17532.1 vs. uniprot
Match: D7G1X5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X5_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 3.200e-9 Identity = 33/46 (71.74%), Postives = 33/46 (71.74%), Query Frame = -2 Query: 689 MGERILFRTPATLVAQ*VFCGRGRVSACFFRARGDARFCSKSGSVE 826
MGERILFR ATLVAQ VFCGRGRVS FF CSKSGSVE
Sbjct: 1 MGERILFRNSATLVAQ-VFCGRGRVSCVFFSCPRGRAICSKSGSVE 45
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 564 |
| Model size | 938 |
| Exons | 1 |
| Ec32 ortholog | Ec-07_003770.2 |
| Ec32 ortholog description | Isoprenylcysteine carboxyl methyltransferase |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936509.4908552-CDS-E-siliculosus-1a_M_contig95:577875..578439 | 1622936509.4908552-CDS-E-siliculosus-1a_M_contig95:577875..578439 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 577876..578439 + |
| 1696251110.1800098-CDS-E-siliculosus-1a_M_contig95:577875..578439 | 1696251110.1800098-CDS-E-siliculosus-1a_M_contig95:577875..578439 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 577876..578439 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936509.5139103-UTR-E-siliculosus-1a_M_contig95:578439..578813 | 1622936509.5139103-UTR-E-siliculosus-1a_M_contig95:578439..578813 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 578440..578813 + |
| 1696251110.190895-UTR-E-siliculosus-1a_M_contig95:578439..578813 | 1696251110.190895-UTR-E-siliculosus-1a_M_contig95:578439..578813 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 578440..578813 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17532.1 >prot_E-siliculosus-1a_M_contig95.17532.1 ID=prot_E-siliculosus-1a_M_contig95.17532.1|Name=mRNA_E-siliculosus-1a_M_contig95.17532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=188bp
TDRTRQSLSSGYIPNELRHPSLFHSFLRPGTKRGFHIARVWASFHPDLTH
EGFLYRTATYRSVPSHVLFRPVPPSRRTGQKRGNQCPTRGVTARPAYRSV
PSHVFFRPLPPSRRTGHKLGNACLTMGNTYFWQPIFSSYSTSSLLFGYLS
PALTRSTHLYTKGMQIFTPSSARKDNKTCLRQKGPGA* back to topmRNA from alignment at E-siliculosus-1a_M_contig95:577876..578813+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17532.1 ID=mRNA_E-siliculosus-1a_M_contig95.17532.1|Name=mRNA_E-siliculosus-1a_M_contig95.17532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=938bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:577876..578813+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACAGACAGGACACGACAATCCCTATCAAGCGGGTACATTCCAAATGAACT
CCGCCACCCCTCGCTGTTTCATTCTTTTTTGCGTCCGGGAACAAAACGTG
GCTTCCACATTGCACGCGTGTGGGCGTCATTTCACCCCGACCTTACACAC
GAGGGTTTTTTGTACCGCACGGCCACATACCGTTCCGTCCCGTCCCATGT
TTTGTTCCGTCCGGTACCACCCTCAAGAAGAACAGGCCAAAAACGAGGTA
ACCAGTGTCCCACAAGGGGGGTTACCGCACGTCCCGCATACCGTTCCGTC
CCGTCCCATGTTTTCTTCCGGCCGTTACCACCCTCAAGAAGAACAGGCCA
CAAACTAGGCAACGCGTGTCTGACGATGGGAAACACATACTTTTGGCAAC
CCATTTTTTCCTCCTACAGTACATCGTCACTGCTGTTCGGTTACCTCTCC
CCTGCGCTCACCAGAAGCACCCATCTTTACACCAAGGGGATGCAGATCTT
TACACCCTCCAGCGCACGAAAAGACAACAAAACATGTCTTCGTCAGAAGG
GGCCGGGGGCTTAAAAAGGCCATCCATCTCAGGCCGGAACTTTTCAATCA
AGACCCTAGCTTTTTCCTGGTCACGCTGCCGTTGAAAAGAGATTAATTTC
CGGACATGCAACAGCACACAGGCTGTTATCCACGCTCGCTCCACGGAACC
GCTCTTGCTACAAAATCGCGCGTCCCCTCGGGCACGAAAAAAACACGCAG
ACACCCTCCCTCGGCCGCAGAAAACCTACTGCGCAACAAGTGTCGCAGGA
GTACGGAAAAGTATCCTTTCGCCCATGCAGCCCAAACCGATCAACAATAA
CCAAAAAAAGTCTGCGCGCTAGAATACTACTATATGTACCCCTCCCCCGC
CCGCCCGCCCGGAGCCCCCGCTATCGTGTGTCATGCGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:577876..578813+ >mRNA_E-siliculosus-1a_M_contig95.17532.1 ID=mRNA_E-siliculosus-1a_M_contig95.17532.1|Name=mRNA_E-siliculosus-1a_M_contig95.17532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1128bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:577876..578813+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACAGACAGGACACGACAATCCCTATCAAGCGGGTACATTCCAAATGAACT
CCGCCACCCCTCGCTGTTTCATTCTTTTTTGCGTCCGGGAACAAAACGTG
GCTTCCACATTGCACGCGTGTGGGCGTCATTTCACCCCGACCTTACACAC
GAGGGTTTTTTGTACCGCACGGCCACATACCGTTCCGTCCCGTCCCATGT
TTTGTTCCGTCCGGTACCACCCTCAAGAAGAACAGGCCAAAAACGAGGTA
ACCAGTGTCCCACAAGGGGGGTTACCGCACGTCCCGCATACCGTTCCGTC
CCGTCCCATGTTTTCTTCCGGCCGTTACCACCCTCAAGAAGAACAGGCCA
CAAACTAGGCAACGCGTGTCTGACGATGGGAAACACATACTTTTGGCAAC
CCATTTTTTCCTCCTACAGTACATCGTCACTGCTGTTCGGTTACCTCTCC
CCTGCGCTCACCAGAAGCACCCATCTTTACACCAAGGGGATGCAGATCTT
TACACCCTCCAGCGCACGAAAAGACAACAAAACATGTCTTCGTCAGAAGG
GGCCGGGGGCTTAAACAGACAGGACACGACAATCCCTATCAAGCGGGTAC
ATTCCAAATGAACTCCGCCACCCCTCGCTGTTTCATTCTTTTTTGCGTCC
GGGAACAAAACGTGGCTTCCACATTGCACGCGTGTGGGCGTCATTTCACC
CCGACCTTACACACGAGGGTTTTTTGTACCGCACGGCCACATACCGTTCC
GTCCCGTCCCATGTTTTGTTCCGTCCGGTACCACCCTCAAGAAGAACAGG
CCAAAAACGAGGTAACCAGTGTCCCACAAGGGGGGTTACCGCACGTCCCG
CATACCGTTCCGTCCCGTCCCATGTTTTCTTCCGGCCGTTACCACCCTCA
AGAAGAACAGGCCACAAACTAGGCAACGCGTGTCTGACGATGGGAAACAC
ATACTTTTGGCAACCCATTTTTTCCTCCTACAGTACATCGTCACTGCTGT
TCGGTTACCTCTCCCCTGCGCTCACCAGAAGCACCCATCTTTACACCAAG
GGGATGCAGATCTTTACACCCTCCAGCGCACGAAAAGACAACAAAACATG
TCTTCGTCAGAAGGGGCCGGGGGCTTAA back to top
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