mRNA_E-siliculosus-1a_M_contig95.17532.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17532.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17532.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17532.1 vs. uniprot
Match: D7G1X5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.200e-9
Identity = 33/46 (71.74%), Postives = 33/46 (71.74%), Query Frame = -2 
Query:  689 MGERILFRTPATLVAQ*VFCGRGRVSACFFRARGDARFCSKSGSVE 826
            MGERILFR  ATLVAQ VFCGRGRVS  FF        CSKSGSVE
Sbjct:    1 MGERILFRNSATLVAQ-VFCGRGRVSCVFFSCPRGRAICSKSGSVE 45
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1X5_ECTSI3.200e-971.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:577876..578813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size564
Model size938
Exons1
Ec32 orthologEc-07_003770.2
Ec32 ortholog descriptionIsoprenylcysteine carboxyl methyltransferase
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.4908552-CDS-E-siliculosus-1a_M_contig95:577875..5784391622936509.4908552-CDS-E-siliculosus-1a_M_contig95:577875..578439Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 577876..578439 +
1696251110.1800098-CDS-E-siliculosus-1a_M_contig95:577875..5784391696251110.1800098-CDS-E-siliculosus-1a_M_contig95:577875..578439Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 577876..578439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.5139103-UTR-E-siliculosus-1a_M_contig95:578439..5788131622936509.5139103-UTR-E-siliculosus-1a_M_contig95:578439..578813Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 578440..578813 +
1696251110.190895-UTR-E-siliculosus-1a_M_contig95:578439..5788131696251110.190895-UTR-E-siliculosus-1a_M_contig95:578439..578813Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 578440..578813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17532.1prot_E-siliculosus-1a_M_contig95.17532.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 577876..578439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17532.1

>prot_E-siliculosus-1a_M_contig95.17532.1 ID=prot_E-siliculosus-1a_M_contig95.17532.1|Name=mRNA_E-siliculosus-1a_M_contig95.17532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=188bp
TDRTRQSLSSGYIPNELRHPSLFHSFLRPGTKRGFHIARVWASFHPDLTH
EGFLYRTATYRSVPSHVLFRPVPPSRRTGQKRGNQCPTRGVTARPAYRSV
PSHVFFRPLPPSRRTGHKLGNACLTMGNTYFWQPIFSSYSTSSLLFGYLS
PALTRSTHLYTKGMQIFTPSSARKDNKTCLRQKGPGA*
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mRNA from alignment at E-siliculosus-1a_M_contig95:577876..578813+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17532.1 ID=mRNA_E-siliculosus-1a_M_contig95.17532.1|Name=mRNA_E-siliculosus-1a_M_contig95.17532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=938bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:577876..578813+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACAGACAGGACACGACAATCCCTATCAAGCGGGTACATTCCAAATGAACT
CCGCCACCCCTCGCTGTTTCATTCTTTTTTGCGTCCGGGAACAAAACGTG
GCTTCCACATTGCACGCGTGTGGGCGTCATTTCACCCCGACCTTACACAC
GAGGGTTTTTTGTACCGCACGGCCACATACCGTTCCGTCCCGTCCCATGT
TTTGTTCCGTCCGGTACCACCCTCAAGAAGAACAGGCCAAAAACGAGGTA
ACCAGTGTCCCACAAGGGGGGTTACCGCACGTCCCGCATACCGTTCCGTC
CCGTCCCATGTTTTCTTCCGGCCGTTACCACCCTCAAGAAGAACAGGCCA
CAAACTAGGCAACGCGTGTCTGACGATGGGAAACACATACTTTTGGCAAC
CCATTTTTTCCTCCTACAGTACATCGTCACTGCTGTTCGGTTACCTCTCC
CCTGCGCTCACCAGAAGCACCCATCTTTACACCAAGGGGATGCAGATCTT
TACACCCTCCAGCGCACGAAAAGACAACAAAACATGTCTTCGTCAGAAGG
GGCCGGGGGCTTAAAAAGGCCATCCATCTCAGGCCGGAACTTTTCAATCA
AGACCCTAGCTTTTTCCTGGTCACGCTGCCGTTGAAAAGAGATTAATTTC
CGGACATGCAACAGCACACAGGCTGTTATCCACGCTCGCTCCACGGAACC
GCTCTTGCTACAAAATCGCGCGTCCCCTCGGGCACGAAAAAAACACGCAG
ACACCCTCCCTCGGCCGCAGAAAACCTACTGCGCAACAAGTGTCGCAGGA
GTACGGAAAAGTATCCTTTCGCCCATGCAGCCCAAACCGATCAACAATAA
CCAAAAAAAGTCTGCGCGCTAGAATACTACTATATGTACCCCTCCCCCGC
CCGCCCGCCCGGAGCCCCCGCTATCGTGTGTCATGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:577876..578813+

>mRNA_E-siliculosus-1a_M_contig95.17532.1 ID=mRNA_E-siliculosus-1a_M_contig95.17532.1|Name=mRNA_E-siliculosus-1a_M_contig95.17532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1128bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:577876..578813+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACAGACAGGACACGACAATCCCTATCAAGCGGGTACATTCCAAATGAACT
CCGCCACCCCTCGCTGTTTCATTCTTTTTTGCGTCCGGGAACAAAACGTG
GCTTCCACATTGCACGCGTGTGGGCGTCATTTCACCCCGACCTTACACAC
GAGGGTTTTTTGTACCGCACGGCCACATACCGTTCCGTCCCGTCCCATGT
TTTGTTCCGTCCGGTACCACCCTCAAGAAGAACAGGCCAAAAACGAGGTA
ACCAGTGTCCCACAAGGGGGGTTACCGCACGTCCCGCATACCGTTCCGTC
CCGTCCCATGTTTTCTTCCGGCCGTTACCACCCTCAAGAAGAACAGGCCA
CAAACTAGGCAACGCGTGTCTGACGATGGGAAACACATACTTTTGGCAAC
CCATTTTTTCCTCCTACAGTACATCGTCACTGCTGTTCGGTTACCTCTCC
CCTGCGCTCACCAGAAGCACCCATCTTTACACCAAGGGGATGCAGATCTT
TACACCCTCCAGCGCACGAAAAGACAACAAAACATGTCTTCGTCAGAAGG
GGCCGGGGGCTTAAACAGACAGGACACGACAATCCCTATCAAGCGGGTAC
ATTCCAAATGAACTCCGCCACCCCTCGCTGTTTCATTCTTTTTTGCGTCC
GGGAACAAAACGTGGCTTCCACATTGCACGCGTGTGGGCGTCATTTCACC
CCGACCTTACACACGAGGGTTTTTTGTACCGCACGGCCACATACCGTTCC
GTCCCGTCCCATGTTTTGTTCCGTCCGGTACCACCCTCAAGAAGAACAGG
CCAAAAACGAGGTAACCAGTGTCCCACAAGGGGGGTTACCGCACGTCCCG
CATACCGTTCCGTCCCGTCCCATGTTTTCTTCCGGCCGTTACCACCCTCA
AGAAGAACAGGCCACAAACTAGGCAACGCGTGTCTGACGATGGGAAACAC
ATACTTTTGGCAACCCATTTTTTCCTCCTACAGTACATCGTCACTGCTGT
TCGGTTACCTCTCCCCTGCGCTCACCAGAAGCACCCATCTTTACACCAAG
GGGATGCAGATCTTTACACCCTCCAGCGCACGAAAAGACAACAAAACATG
TCTTCGTCAGAAGGGGCCGGGGGCTTAA
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