|
|
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17523.1 vs. uniprot
Match: D7G1W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W7_ECTSI) HSP 1 Score: 50.8 bits (120), Expect = 2.360e-5 Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 Query: 615 AKAREALIGSAGMEQLIKMVAQDDGE 692
AKAREALIGSAGMEQLIKMVAQDDGE
Sbjct: 13 AKAREALIGSAGMEQLIKMVAQDDGE 38
BLAST of mRNA_E-siliculosus-1a_M_contig95.17523.1 vs. uniprot
Match: A0A6H5KFF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF7_9PHAE) HSP 1 Score: 50.8 bits (120), Expect = 5.030e-5 Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 Query: 615 AKAREALIGSAGMEQLIKMVAQDDGE 692
AKAREALIGSAGMEQLIKMVAQDDGE
Sbjct: 45 AKAREALIGSAGMEQLIKMVAQDDGE 70
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 549 |
| Model size | 693 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936509.413082-UTR-E-siliculosus-1a_M_contig95:516413..516557 | 1622936509.413082-UTR-E-siliculosus-1a_M_contig95:516413..516557 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 516414..516557 + |
| 1696251110.1561723-UTR-E-siliculosus-1a_M_contig95:516413..516557 | 1696251110.1561723-UTR-E-siliculosus-1a_M_contig95:516413..516557 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 516414..516557 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936509.4312916-CDS-E-siliculosus-1a_M_contig95:516557..517106 | 1622936509.4312916-CDS-E-siliculosus-1a_M_contig95:516557..517106 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 516558..517106 + |
| 1696251110.1692207-CDS-E-siliculosus-1a_M_contig95:516557..517106 | 1696251110.1692207-CDS-E-siliculosus-1a_M_contig95:516557..517106 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 516558..517106 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17523.1 >prot_E-siliculosus-1a_M_contig95.17523.1 ID=prot_E-siliculosus-1a_M_contig95.17523.1|Name=mRNA_E-siliculosus-1a_M_contig95.17523.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=183bp
MNHRYVNNTGEQPASLGGKTEFQDREPLEASTPSPYESSGVAGDCYYPSV
HLPVHAAPSFTAQHTALVLWRLIDAGGTHCPSSHRIPGQDATAEKRSRSQ
LAGLSKWDISHGTNGFIRIHSCNHKRSDRSAVVPNGDEHPSSRLLACCIL
CFLFLLTSPSSCATILINCSIPADPMRASRALA back to topmRNA from alignment at E-siliculosus-1a_M_contig95:516414..517106+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17523.1 ID=mRNA_E-siliculosus-1a_M_contig95.17523.1|Name=mRNA_E-siliculosus-1a_M_contig95.17523.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=693bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:516414..517106+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGTCTGGCGAGACCAAATCTGATGACAAGAGCCAGTGCCTGCTCGCTTGT
ACAGCAGTACTGGTGTAGTAGAGGTCCAACACCTAGGGCAATGGGGCCGT
AGGTATGGAGGCGGTTCTCAACCTGGTGCGATTGTTTATCGACGATGAAT
CATAGGTACGTGAACAACACAGGCGAGCAGCCAGCCAGTTTGGGAGGCAA
AACAGAGTTTCAGGATCGAGAGCCACTAGAGGCGTCCACCCCCTCTCCGT
ACGAAAGCTCTGGCGTCGCCGGTGACTGCTACTACCCCTCTGTTCACCTA
CCCGTCCACGCTGCTCCCTCTTTCACTGCCCAACACACCGCACTAGTGCT
GTGGCGGCTCATTGATGCCGGGGGCACACACTGCCCCTCTTCCCACCGCA
TACCAGGACAAGATGCTACTGCCGAAAAAAGATCGAGGTCACAACTGGCT
GGTCTTTCCAAGTGGGACATTTCACACGGAACCAACGGATTCATTCGGAT
TCATTCGTGCAATCACAAGCGCTCCGACCGCTCTGCTGTTGTTCCCAACG
GGGACGAACATCCATCATCGAGGCTGCTTGCATGTTGTATCTTGTGTTTT
CTGTTTCTCCTCACCTCGCCATCGTCTTGTGCGACCATCTTGATCAACTG
CTCCATACCCGCTGATCCGATGAGGGCTTCGCGCGCCTTGGCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:516414..517106+ >mRNA_E-siliculosus-1a_M_contig95.17523.1 ID=mRNA_E-siliculosus-1a_M_contig95.17523.1|Name=mRNA_E-siliculosus-1a_M_contig95.17523.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1098bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:516414..517106+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAATCATAGGTACGTGAACAACACAGGCGAGCAGCCAGCCAGTTTGGG
AGGCAAAACAGAGTTTCAGGATCGAGAGCCACTAGAGGCGTCCACCCCCT
CTCCGTACGAAAGCTCTGGCGTCGCCGGTGACTGCTACTACCCCTCTGTT
CACCTACCCGTCCACGCTGCTCCCTCTTTCACTGCCCAACACACCGCACT
AGTGCTGTGGCGGCTCATTGATGCCGGGGGCACACACTGCCCCTCTTCCC
ACCGCATACCAGGACAAGATGCTACTGCCGAAAAAAGATCGAGGTCACAA
CTGGCTGGTCTTTCCAAGTGGGACATTTCACACGGAACCAACGGATTCAT
TCGGATTCATTCGTGCAATCACAAGCGCTCCGACCGCTCTGCTGTTGTTC
CCAACGGGGACGAACATCCATCATCGAGGCTGCTTGCATGTTGTATCTTG
TGTTTTCTGTTTCTCCTCACCTCGCCATCGTCTTGTGCGACCATCTTGAT
CAACTGCTCCATACCCGCTGATCCGATGAGGGCTTCGCGCGCCTTGGCCA
TGAATCATAGGTACGTGAACAACACAGGCGAGCAGCCAGCCAGTTTGGGA
GGCAAAACAGAGTTTCAGGATCGAGAGCCACTAGAGGCGTCCACCCCCTC
TCCGTACGAAAGCTCTGGCGTCGCCGGTGACTGCTACTACCCCTCTGTTC
ACCTACCCGTCCACGCTGCTCCCTCTTTCACTGCCCAACACACCGCACTA
GTGCTGTGGCGGCTCATTGATGCCGGGGGCACACACTGCCCCTCTTCCCA
CCGCATACCAGGACAAGATGCTACTGCCGAAAAAAGATCGAGGTCACAAC
TGGCTGGTCTTTCCAAGTGGGACATTTCACACGGAACCAACGGATTCATT
CGGATTCATTCGTGCAATCACAAGCGCTCCGACCGCTCTGCTGTTGTTCC
CAACGGGGACGAACATCCATCATCGAGGCTGCTTGCATGTTGTATCTTGT
GTTTTCTGTTTCTCCTCACCTCGCCATCGTCTTGTGCGACCATCTTGATC
AACTGCTCCATACCCGCTGATCCGATGAGGGCTTCGCGCGCCTTGGCC back to top
|