mRNA_E-siliculosus-1a_M_contig95.17523.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17523.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17523.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17523.1 vs. uniprot
Match: D7G1W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W7_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 2.360e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:  615 AKAREALIGSAGMEQLIKMVAQDDGE 692
            AKAREALIGSAGMEQLIKMVAQDDGE
Sbjct:   13 AKAREALIGSAGMEQLIKMVAQDDGE 38
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17523.1 vs. uniprot
Match: A0A6H5KFF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF7_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.030e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:  615 AKAREALIGSAGMEQLIKMVAQDDGE 692
            AKAREALIGSAGMEQLIKMVAQDDGE
Sbjct:   45 AKAREALIGSAGMEQLIKMVAQDDGE 70
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W7_ECTSI2.360e-5100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFF7_9PHAE5.030e-5100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:516414..517106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size549
Model size693
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.413082-UTR-E-siliculosus-1a_M_contig95:516413..5165571622936509.413082-UTR-E-siliculosus-1a_M_contig95:516413..516557Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 516414..516557 +
1696251110.1561723-UTR-E-siliculosus-1a_M_contig95:516413..5165571696251110.1561723-UTR-E-siliculosus-1a_M_contig95:516413..516557Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 516414..516557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.4312916-CDS-E-siliculosus-1a_M_contig95:516557..5171061622936509.4312916-CDS-E-siliculosus-1a_M_contig95:516557..517106Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 516558..517106 +
1696251110.1692207-CDS-E-siliculosus-1a_M_contig95:516557..5171061696251110.1692207-CDS-E-siliculosus-1a_M_contig95:516557..517106Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 516558..517106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17523.1prot_E-siliculosus-1a_M_contig95.17523.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 516558..517106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17523.1

>prot_E-siliculosus-1a_M_contig95.17523.1 ID=prot_E-siliculosus-1a_M_contig95.17523.1|Name=mRNA_E-siliculosus-1a_M_contig95.17523.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=183bp
MNHRYVNNTGEQPASLGGKTEFQDREPLEASTPSPYESSGVAGDCYYPSV
HLPVHAAPSFTAQHTALVLWRLIDAGGTHCPSSHRIPGQDATAEKRSRSQ
LAGLSKWDISHGTNGFIRIHSCNHKRSDRSAVVPNGDEHPSSRLLACCIL
CFLFLLTSPSSCATILINCSIPADPMRASRALA
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mRNA from alignment at E-siliculosus-1a_M_contig95:516414..517106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17523.1 ID=mRNA_E-siliculosus-1a_M_contig95.17523.1|Name=mRNA_E-siliculosus-1a_M_contig95.17523.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=693bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:516414..517106+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGTCTGGCGAGACCAAATCTGATGACAAGAGCCAGTGCCTGCTCGCTTGT
ACAGCAGTACTGGTGTAGTAGAGGTCCAACACCTAGGGCAATGGGGCCGT
AGGTATGGAGGCGGTTCTCAACCTGGTGCGATTGTTTATCGACGATGAAT
CATAGGTACGTGAACAACACAGGCGAGCAGCCAGCCAGTTTGGGAGGCAA
AACAGAGTTTCAGGATCGAGAGCCACTAGAGGCGTCCACCCCCTCTCCGT
ACGAAAGCTCTGGCGTCGCCGGTGACTGCTACTACCCCTCTGTTCACCTA
CCCGTCCACGCTGCTCCCTCTTTCACTGCCCAACACACCGCACTAGTGCT
GTGGCGGCTCATTGATGCCGGGGGCACACACTGCCCCTCTTCCCACCGCA
TACCAGGACAAGATGCTACTGCCGAAAAAAGATCGAGGTCACAACTGGCT
GGTCTTTCCAAGTGGGACATTTCACACGGAACCAACGGATTCATTCGGAT
TCATTCGTGCAATCACAAGCGCTCCGACCGCTCTGCTGTTGTTCCCAACG
GGGACGAACATCCATCATCGAGGCTGCTTGCATGTTGTATCTTGTGTTTT
CTGTTTCTCCTCACCTCGCCATCGTCTTGTGCGACCATCTTGATCAACTG
CTCCATACCCGCTGATCCGATGAGGGCTTCGCGCGCCTTGGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:516414..517106+

>mRNA_E-siliculosus-1a_M_contig95.17523.1 ID=mRNA_E-siliculosus-1a_M_contig95.17523.1|Name=mRNA_E-siliculosus-1a_M_contig95.17523.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1098bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:516414..517106+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAATCATAGGTACGTGAACAACACAGGCGAGCAGCCAGCCAGTTTGGG
AGGCAAAACAGAGTTTCAGGATCGAGAGCCACTAGAGGCGTCCACCCCCT
CTCCGTACGAAAGCTCTGGCGTCGCCGGTGACTGCTACTACCCCTCTGTT
CACCTACCCGTCCACGCTGCTCCCTCTTTCACTGCCCAACACACCGCACT
AGTGCTGTGGCGGCTCATTGATGCCGGGGGCACACACTGCCCCTCTTCCC
ACCGCATACCAGGACAAGATGCTACTGCCGAAAAAAGATCGAGGTCACAA
CTGGCTGGTCTTTCCAAGTGGGACATTTCACACGGAACCAACGGATTCAT
TCGGATTCATTCGTGCAATCACAAGCGCTCCGACCGCTCTGCTGTTGTTC
CCAACGGGGACGAACATCCATCATCGAGGCTGCTTGCATGTTGTATCTTG
TGTTTTCTGTTTCTCCTCACCTCGCCATCGTCTTGTGCGACCATCTTGAT
CAACTGCTCCATACCCGCTGATCCGATGAGGGCTTCGCGCGCCTTGGCCA
TGAATCATAGGTACGTGAACAACACAGGCGAGCAGCCAGCCAGTTTGGGA
GGCAAAACAGAGTTTCAGGATCGAGAGCCACTAGAGGCGTCCACCCCCTC
TCCGTACGAAAGCTCTGGCGTCGCCGGTGACTGCTACTACCCCTCTGTTC
ACCTACCCGTCCACGCTGCTCCCTCTTTCACTGCCCAACACACCGCACTA
GTGCTGTGGCGGCTCATTGATGCCGGGGGCACACACTGCCCCTCTTCCCA
CCGCATACCAGGACAAGATGCTACTGCCGAAAAAAGATCGAGGTCACAAC
TGGCTGGTCTTTCCAAGTGGGACATTTCACACGGAACCAACGGATTCATT
CGGATTCATTCGTGCAATCACAAGCGCTCCGACCGCTCTGCTGTTGTTCC
CAACGGGGACGAACATCCATCATCGAGGCTGCTTGCATGTTGTATCTTGT
GTTTTCTGTTTCTCCTCACCTCGCCATCGTCTTGTGCGACCATCTTGATC
AACTGCTCCATACCCGCTGATCCGATGAGGGCTTCGCGCGCCTTGGCC
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