mRNA_E-siliculosus-1a_M_contig95.17484.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17484.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17484.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17484.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 4.340e-56
Identity = 154/169 (91.12%), Postives = 157/169 (92.90%), Query Frame = -2 
Query:   18 SASAVTSPGYAPGDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT--GDXXXXXXXIPGSGGMVVHGPHLPGGGAFTGGQDGDGGGTGWLGGGTELSKIVGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLITTADASDVGQGLDMRDFWSNDNASGAKNGLG 518
            SASA+ SP +A  DVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT  GD XXXXXX+PGSGGMV HGPHLPGGGA  GGQDGDGGG GWLGGGTELSKIV EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLITTADASDVGQGLDMRDFWSNDNASGAKNGLG
Sbjct:  424 SASALISPEFASDDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLTWDGDDXXXXXXVPGSGGMV-HGPHLPGGGALAGGQDGDGGGMGWLGGGTELSKIVREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLITTADASDVGQGLDMRDFWSNDNASGAKNGLG 591
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE4.340e-5691.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:187383..187984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size600
Model size603
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.8082297-CDS-E-siliculosus-1a_M_contig95:187382..1879821622936508.8082297-CDS-E-siliculosus-1a_M_contig95:187382..187982Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 187383..187982 +
1696251110.0152361-CDS-E-siliculosus-1a_M_contig95:187382..1879821696251110.0152361-CDS-E-siliculosus-1a_M_contig95:187382..187982Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 187383..187982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17484.1prot_E-siliculosus-1a_M_contig95.17484.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 187383..187982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17484.1

>prot_E-siliculosus-1a_M_contig95.17484.1 ID=prot_E-siliculosus-1a_M_contig95.17484.1|Name=mRNA_E-siliculosus-1a_M_contig95.17484.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=200bp
PHAPPPPRPFLAPLALSLLQKSRMSSPCPTSDASAVVIRSSSSPLFPPPP
PPAAAPPLCPQASPPPPPPPSPTILLSSVPPPSHPVPPPSPSCPPVNAPP
PGKCGPCTTIPPLPGIPPPPSSSSPVRSHSAARSTLPLQAFNASTTRALS
NPISASMSTSPGAYPGDVTADADVVGAAATAAAICSDNGREAGGGILAGG
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mRNA from alignment at E-siliculosus-1a_M_contig95:187383..187984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17484.1 ID=mRNA_E-siliculosus-1a_M_contig95.17484.1|Name=mRNA_E-siliculosus-1a_M_contig95.17484.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=602bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:187383..187984+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCCCACGCCCCGCCGCCGCCTAGACCATTCTTGGCACCGCTGGCGTTGTC
GTTGCTCCAGAAGTCCCGCATGTCGAGCCCTTGCCCCACATCGGACGCGT
CGGCCGTAGTGATAAGGTCATCATCGTCGCCATTGTTTCCCCCGCCGCCG
CCGCCGGCGGCGGCACCACCGCTCTGCCCCCAGGCGTCACCCCCGCCCCC
GCCCCCACCCTCCCCAACAATCTTGCTCAGCTCGGTTCCGCCGCCCAGCC
ACCCCGTCCCTCCTCCGTCGCCGTCTTGCCCTCCCGTAAACGCGCCGCCG
CCGGGCAAGTGCGGCCCGTGCACCACCATCCCGCCGCTCCCGGGAATACC
ACCACCGCCATCGTCATCGTCTCCCGTCAGAAGCCACTCGGCCGCGCGCT
CAACGCTGCCGCTGCAGGCCTTCAACGCGAGCACCACCCGCGCCCTGTCG
AACCCCATCTCCGCGAGCATGTCCACGTCGCCCGGCGCGTACCCGGGAGA
CGTCACCGCCGACGCCGACGTCGTGGGCGCCGCCGCCACCGCCGCCGCTA
TCTGCTCCGACAACGGCCGCGAGGCTGGCGGCGGGATCTTGGCGGGCGGC
GG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:187383..187984+

>mRNA_E-siliculosus-1a_M_contig95.17484.1 ID=mRNA_E-siliculosus-1a_M_contig95.17484.1|Name=mRNA_E-siliculosus-1a_M_contig95.17484.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1200bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:187383..187984+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCCCACGCCCCGCCGCCGCCTAGACCATTCTTGGCACCGCTGGCGTTGTC
GTTGCTCCAGAAGTCCCGCATGTCGAGCCCTTGCCCCACATCGGACGCGT
CGGCCGTAGTGATAAGGTCATCATCGTCGCCATTGTTTCCCCCGCCGCCG
CCGCCGGCGGCGGCACCACCGCTCTGCCCCCAGGCGTCACCCCCGCCCCC
GCCCCCACCCTCCCCAACAATCTTGCTCAGCTCGGTTCCGCCGCCCAGCC
ACCCCGTCCCTCCTCCGTCGCCGTCTTGCCCTCCCGTAAACGCGCCGCCG
CCGGGCAAGTGCGGCCCGTGCACCACCATCCCGCCGCTCCCGGGAATACC
ACCACCGCCATCGTCATCGTCTCCCGTCAGAAGCCACTCGGCCGCGCGCT
CAACGCTGCCGCTGCAGGCCTTCAACGCGAGCACCACCCGCGCCCTGTCG
AACCCCATCTCCGCGAGCATGTCCACGTCGCCCGGCGCGTACCCGGGAGA
CGTCACCGCCGACGCCGACGTCGTGGGCGCCGCCGCCACCGCCGCCGCTA
TCTGCTCCGACAACGGCCGCGAGGCTGGCGGCGGGATCTTGGCGGGCGGC
CCCCACGCCCCGCCGCCGCCTAGACCATTCTTGGCACCGCTGGCGTTGTC
GTTGCTCCAGAAGTCCCGCATGTCGAGCCCTTGCCCCACATCGGACGCGT
CGGCCGTAGTGATAAGGTCATCATCGTCGCCATTGTTTCCCCCGCCGCCG
CCGCCGGCGGCGGCACCACCGCTCTGCCCCCAGGCGTCACCCCCGCCCCC
GCCCCCACCCTCCCCAACAATCTTGCTCAGCTCGGTTCCGCCGCCCAGCC
ACCCCGTCCCTCCTCCGTCGCCGTCTTGCCCTCCCGTAAACGCGCCGCCG
CCGGGCAAGTGCGGCCCGTGCACCACCATCCCGCCGCTCCCGGGAATACC
ACCACCGCCATCGTCATCGTCTCCCGTCAGAAGCCACTCGGCCGCGCGCT
CAACGCTGCCGCTGCAGGCCTTCAACGCGAGCACCACCCGCGCCCTGTCG
AACCCCATCTCCGCGAGCATGTCCACGTCGCCCGGCGCGTACCCGGGAGA
CGTCACCGCCGACGCCGACGTCGTGGGCGCCGCCGCCACCGCCGCCGCTA
TCTGCTCCGACAACGGCCGCGAGGCTGGCGGCGGGATCTTGGCGGGCGGC
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