mRNA_E-siliculosus-1a_M_contig94.17431.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17431.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17431.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:383603..386064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size912
Model size912
Exons4
Ec32 orthologEc-27_000800.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17431.1prot_E-siliculosus-1a_M_contig94.17431.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 383603..386064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936500.1140795-CDS-E-siliculosus-1a_M_contig94:383602..3836731622936500.1140795-CDS-E-siliculosus-1a_M_contig94:383602..383673Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 383603..383673 +
1696251106.5300977-CDS-E-siliculosus-1a_M_contig94:383602..3836731696251106.5300977-CDS-E-siliculosus-1a_M_contig94:383602..383673Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 383603..383673 +
1622936500.2106345-CDS-E-siliculosus-1a_M_contig94:384164..3844071622936500.2106345-CDS-E-siliculosus-1a_M_contig94:384164..384407Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 384165..384407 +
1696251106.5401669-CDS-E-siliculosus-1a_M_contig94:384164..3844071696251106.5401669-CDS-E-siliculosus-1a_M_contig94:384164..384407Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 384165..384407 +
1622936500.223143-CDS-E-siliculosus-1a_M_contig94:385078..3853371622936500.223143-CDS-E-siliculosus-1a_M_contig94:385078..385337Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 385079..385337 +
1696251106.549733-CDS-E-siliculosus-1a_M_contig94:385078..3853371696251106.549733-CDS-E-siliculosus-1a_M_contig94:385078..385337Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 385079..385337 +
1622936500.2365031-CDS-E-siliculosus-1a_M_contig94:385725..3860641622936500.2365031-CDS-E-siliculosus-1a_M_contig94:385725..386064Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 385726..386064 +
1696251106.5595953-CDS-E-siliculosus-1a_M_contig94:385725..3860641696251106.5595953-CDS-E-siliculosus-1a_M_contig94:385725..386064Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 385726..386064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17431.1

>prot_E-siliculosus-1a_M_contig94.17431.1 ID=prot_E-siliculosus-1a_M_contig94.17431.1|Name=mRNA_E-siliculosus-1a_M_contig94.17431.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=304bp
MVLSASVLWSVFVFTFHVTAWKTRASLQTPLFPLMMTAVACGAVAALGTL
RLWLFVLPSRLMRKTSIPTVIKAWSDDRHGLPCLCVCYATWLLAVGIVGR
FNSFSLTLSKAIRDSERSTPKAAPSPSSHESSPVARAVTAKGLIIGLRER
LTCGGIGGIDGGVRGGGAAGVVPKTAGAYAKTKSMLKKLTVDTPLVFFMT
LYTTMPSVWLIVAMRFLARDSTSTGTAAAAPSPPPRSAFLLPTVKPSSNI
SSGGCNGDDGDGGQGCRKKNNERLPSFLQGALLRVASKYRDSRQVCVRVT
PTE*
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mRNA from alignment at E-siliculosus-1a_M_contig94:383603..386064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17431.1 ID=mRNA_E-siliculosus-1a_M_contig94.17431.1|Name=mRNA_E-siliculosus-1a_M_contig94.17431.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2462bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:383603..386064+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGTTGTCCGCCTCCGTTCTTTGGAGCGTTTTCGTCTTCACCTTCCA
CGTGACCGCCTGGAAGACAAGGTACAGTCATTGAGGGGGGATTCGGATTT
GCGGGGAGCGGAGCACCTATGTTTTGCTCGATAGGCCTCCTTCGTACATA
TCCCCAAAGAGGCGCGGCAGAGTTCGCCGAGCCGAGGGGGCAATAACAGA
GAGAGAAGAACGGTCTACATAGTCTCCATGAATACTACCCAAACAAAAGG
GAAGTTGCATGTATGTATGTATAGTGTACATGTAGTGAAGCCCTCCTGTG
TATCGATGAACCATCACACCCAACTGCGCCACCCCGCTGATTACATACGC
GGGTGGGCATGATGTGCACCTAGCAACCAGAAGGCGCAATTCTCACACCT
TTGTCATGTTAGACCACGGGAATGATGTATGTTCTCCTCTACACTGTAGT
CAGCACAACACCTTGGGATTCCGGAAGCAATGTAGCATGTGTATGTTGGG
CTACACAGATGATTTTCTTCTGATCTCCGCCATCCTTCGCGGTACGACGA
CGACGAACTCAGGGCGAGCTTGCAGACCCCCCTGTTCCCGTTGATGATGA
CCGCGGTTGCCTGCGGGGCGGTGGCGGCCCTCGGGACTCTCCGGCTGTGG
CTGTTCGTCCTCCCTTCGAGGCTCATGAGGAAGACATCAATACCGACGGT
GATCAAGGCGTGGTCCGACGATCGACACGGCCTCCCGTGCCTCTGCGTGT
GCTACGCAACATGGCTCCTGGCTGTTGGCATCGTTGGACGGTTCAACTCT
TTTAGGTACTTTCAAAGGCTCAGGCCGTGGTATTATAGTAATATCGTGCA
GGCTGCGAAGGATACCCACCTCCGCCTGATGATCGTTTCGGAACATCCGA
ACATCGCCAGCGGAGACAAGCTGACTCTCATGGAAAAATTAAAAAAGAGC
GTCGGCGTCCCCCCTGTTGTCGAACGCGCGAGTTTGACAACCGGAGTGGT
ACCCATGGCGACACACGGTAGTACTGTTCTTGGTTTTGACCGACACAGGA
CGTGTACCAAATAGTATCGTGCGATTCATGTATCCCGTAGCTTCTGATTA
CCTGGTTCACGTGATGTGTAGAAATCTCTGCTTGTTGAGATGGCGACCGC
TCAATCAAGTCCAGGGCGAGTAGGTCCTTCCAAACCACGGGATAAATGAG
GAGTTTTTTGAGTACCAGTAGATGGAGAATGCGGAACGGCGTCAATGTAA
AGATTAAATGCGCAAGCAGGAGCACGAACGAACGAACGAACGAACGAACG
CTTGTAAGTAGTAGTAGAAGCTTGTGGCCTAAGTGTCTTCCATCAACCTG
GCGTTAATGCTCGGCCGCGTACGATTGATTGTTTTCCACGACACTAACAC
CAAGGGCTCGAGCTATGCTGCTGGGCTCCACCGGTCCAATGATGTCCTTC
TTCGCCCTCGTGGTGGGGTCCGTCAGCCTTACCCTATCCAAGGCTATCCG
TGACTCCGAGCGATCGACACCCAAAGCAGCACCAAGCCCTTCTTCCCATG
AAAGCTCGCCAGTGGCAAGAGCGGTAACGGCAAAAGGCTTAATCATCGGA
CTTCGGGAGAGATTGACATGTGGCGGTATTGGCGGTATTGATGGTGGGGT
TAGAGGTGGGGGAGCTGCAGGAGTTGTGCCGAAGACCGCCGGTGCCTACG
CGAAGACGAAGTCGATGCTCAAGAAGCTCACCGTCGTGAGCTTTGCTGTG
ATTGCGGCGGTGATGGTGACGGTGGTCGGGAGCTTCCGCGAGGGGACCGT
AGCCAACGTGAGAAACTCCGAGCTTTTCCTGTCTCAATCCGCCGGCGGTG
TGTACCAAGTTCAGAGTAACAGGGTGTGCTGGCTGCGCAATGCAATACAG
GAACCCCTCCCGTTTGCTTAATGAATGGCAGACCACCACAGCTTGTTCGT
AATATTTCATGCTTTCTGAGTGGTACTGCAACGGAGTGTTGCAATACTTT
ACACGGCGATTAGCGTACTTCGACGGGTTGGTTGTTCACGTCCTCTCTAC
TACCGCGCGTTGCTTCAATTCCCGGCCTGCTTGCCCGCCCTGTAACCACC
ACGACCGTTGGTCGTGCTTTCAGGACACCCCACTCGTTTTCTTCATGACT
CTCTACACGACGATGCCGTCGGTCTGGCTCATCGTCGCCATGAGGTTCCT
CGCCAGGGACAGCACCAGCACCGGCACGGCGGCGGCGGCGCCGTCGCCAC
CCCCGCGATCGGCTTTTCTTCTTCCCACGGTTAAGCCCAGCAGCAATATT
AGCAGCGGTGGTTGTAACGGGGACGACGGCGATGGTGGGCAAGGATGTAG
AAAAAAGAATAACGAACGCCTGCCCTCGTTTCTCCAAGGCGCTCTTCTCC
GGGTAGCTAGCAAATACCGCGACAGCAGACAAGTTTGTGTACGAGTCACG
CCCACCGAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:383603..386064+

>mRNA_E-siliculosus-1a_M_contig94.17431.1 ID=mRNA_E-siliculosus-1a_M_contig94.17431.1|Name=mRNA_E-siliculosus-1a_M_contig94.17431.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1824bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:383603..386064+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGTTGTCCGCCTCCGTTCTTTGGAGCGTTTTCGTCTTCACCTTCCA
CGTGACCGCCTGGAAGACAAGATGGTGTTGTCCGCCTCCGTTCTTTGGAG
CGTTTTCGTCTTCACCTTCCACGTGACCGCCTGGAAGACAAGGGCGAGCT
TGCAGACCCCCCTGTTCCCGTTGATGATGACCGCGGTTGCCTGCGGGGCG
GTGGCGGCCCTCGGGACTCTCCGGCTGTGGCTGTTCGTCCTCCCTTCGAG
GCTCATGAGGAAGACATCAATACCGACGGTGATCAAGGCGTGGTCCGACG
ATCGACACGGCCTCCCGTGCCTCTGCGTGTGCTACGCAACATGGCTCCTG
GCTGTTGGCATCGTTGGACGGTTCAACTCTTTTAGGGCGAGCTTGCAGAC
CCCCCTGTTCCCGTTGATGATGACCGCGGTTGCCTGCGGGGCGGTGGCGG
CCCTCGGGACTCTCCGGCTGTGGCTGTTCGTCCTCCCTTCGAGGCTCATG
AGGAAGACATCAATACCGACGGTGATCAAGGCGTGGTCCGACGATCGACA
CGGCCTCCCGTGCCTCTGCGTGTGCTACGCAACATGGCTCCTGGCTGTTG
GCATCGTTGGACGGTTCAACTCTTTTAGCCTTACCCTATCCAAGGCTATC
CGTGACTCCGAGCGATCGACACCCAAAGCAGCACCAAGCCCTTCTTCCCA
TGAAAGCTCGCCAGTGGCAAGAGCGGTAACGGCAAAAGGCTTAATCATCG
GACTTCGGGAGAGATTGACATGTGGCGGTATTGGCGGTATTGATGGTGGG
GTTAGAGGTGGGGGAGCTGCAGGAGTTGTGCCGAAGACCGCCGGTGCCTA
CGCGAAGACGAAGTCGATGCTCAAGAAGCTCACCGTCCCTTACCCTATCC
AAGGCTATCCGTGACTCCGAGCGATCGACACCCAAAGCAGCACCAAGCCC
TTCTTCCCATGAAAGCTCGCCAGTGGCAAGAGCGGTAACGGCAAAAGGCT
TAATCATCGGACTTCGGGAGAGATTGACATGTGGCGGTATTGGCGGTATT
GATGGTGGGGTTAGAGGTGGGGGAGCTGCAGGAGTTGTGCCGAAGACCGC
CGGTGCCTACGCGAAGACGAAGTCGATGCTCAAGAAGCTCACCGTCGACA
CCCCACTCGTTTTCTTCATGACTCTCTACACGACGATGCCGTCGGTCTGG
CTCATCGTCGCCATGAGGTTCCTCGCCAGGGACAGCACCAGCACCGGCAC
GGCGGCGGCGGCGCCGTCGCCACCCCCGCGATCGGCTTTTCTTCTTCCCA
CGGTTAAGCCCAGCAGCAATATTAGCAGCGGTGGTTGTAACGGGGACGAC
GGCGATGGTGGGCAAGGATGTAGAAAAAAGAATAACGAACGCCTGCCCTC
GTTTCTCCAAGGCGCTCTTCTCCGGGTAGCTAGCAAATACCGCGACAGCA
GACAAGTTTGTGTACGAGTCACGCCCACCGAATAGGACACCCCACTCGTT
TTCTTCATGACTCTCTACACGACGATGCCGTCGGTCTGGCTCATCGTCGC
CATGAGGTTCCTCGCCAGGGACAGCACCAGCACCGGCACGGCGGCGGCGG
CGCCGTCGCCACCCCCGCGATCGGCTTTTCTTCTTCCCACGGTTAAGCCC
AGCAGCAATATTAGCAGCGGTGGTTGTAACGGGGACGACGGCGATGGTGG
GCAAGGATGTAGAAAAAAGAATAACGAACGCCTGCCCTCGTTTCTCCAAG
GCGCTCTTCTCCGGGTAGCTAGCAAATACCGCGACAGCAGACAAGTTTGT
GTACGAGTCACGCCCACCGAATAG
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